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(-) Description

Title :  CBM29_1, A FAMILY 29 CARBOHYDRATE BINDING MODULE FROM PIROMYCES EQUI
 
Authors :  J. Flint, D. N. Bolam, D. Nurizzo, E. J. Taylor, M. P. Williamson, C. Walters, G. J. Davis, H. J. Gilbert
Date :  22 Nov 04  (Deposition) - 31 Mar 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Carbohydrate Binding, Cbm29, Cbm29_1, Carbohydrate Binding Module (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Flint, D. N. Bolam, D. Nurizzo, E. J. Taylor, M. P. Williamson, C. Walters, G. J. Davies, H. J. Gilbert
Probing The Mechanism Of Ligand Recognition In Family 29 Carbohydrate-Binding Modules
J. Biol. Chem. V. 280 23718 2005
PubMed-ID: 15784618  |  Reference-DOI: 10.1074/JBC.M501551200

(-) Compounds

Molecule 1 - NON-CATALYTIC PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 22B
    Expression System Strain: ORIGAMIB PLYSS
    Expression System Taxid: 562
    Fragment: RESIDUES 174-315
    Organism Scientific: PIROMYCES EQUI
    Organism Taxid: 99929
    Strain: NCP1
    Synonym: CBM29_1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:23 , GLY A:24 , ARG A:96 , GLU A:103 , TYR A:104 , HOH A:2247 , HOH A:2248 , HOH A:2250BINDING SITE FOR RESIDUE GOL A1151

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:63 -A:141

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WCU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WCU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WCU)

(-) Exons   (0, 0)

(no "Exon" information available for 1WCU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:149
 aligned with Q9C171_PIREQ | Q9C171 from UniProtKB/TrEMBL  Length:478

    Alignment length:175
                                   183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343     
         Q9C171_PIREQ   174 VSATYSVVYETGKKLNSGFDNWGWDSKMSFKDNSLVLTADPDEYGAISLKNLNSNYYGKGGCIYLQVKTETEGLVKVQGVRGYDETEAFNVGSFRSSSDFTEYKFEVDDEYQFDRIIVQDGPASNIPIYMRYIIYSTGSCDDFNPPVDTTKVPVTTTTKKSNVRATYTVIFKNAS 348
               SCOP domains d1wcua_ A: automated matches                                                                                                                                                    SCOP domains
               CATH domains 1wcuA00 A:2-150  [code=2.60.120.360, no name defined]                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.........eee....eeeeee..eeeeee......eeeeee......eeeeeeeeeeee...eeeeee..........eeeeee..eeeeeeeeeeeeeeeee.eeeeee.......eeeeeeeee..hhhhh--------------------------hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wcu A   2 VSATYSVVYETGKKLNSGFDNWGWDSKMSFKDNSLVLTADPDEYGAISLKNLNSNYYGKGGCIYLQVKTETEGLVKVQGVRGYDETEAFNVGSFRSSSDFTEYKFEVDDEYQFDRIIVQDGPASNIPIYMRYIIYSTGSCDDH--------------------------ILEHHH 150
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141  |      -         -       145     
                                                                                                                                                                        144                        145
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1WCU)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1WCU)

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  1wcu
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9C171_PIREQ | Q9C171: 1gwk 1gwl 1gwm 1oh3 1w8t 1w8u 1w8w 1w8z 1w90 1w9f

(-) Related Entries Specified in the PDB File

1gwk CARBOHYDRATE BINDING MODULE FAMILY29
1gwl CARBOHYDRATE BINDING MODULE FAMILY29 COMPLEXED WITH MANNOHEXAOSE
1gwm CARBOHYDRATE BINDING MODULE FAMILY29 COMPLEXED WITH GLUCOHEXAOSE
1oh3 E78R MUTANT OF A CARBOHYDRATE BINDING MODULE FAMILY 29
1w8t CBM29-2 MUTANT K74A COMPLEXED WITH CELLULOHEXAOSE: PROBING THE MECHANISM OF LIGAND RECOGNITION BY FAMILY 29 CARBOHYDRATE BINDING MODULES
1w8u CBM29-2 MUTANT D83A COMPLEXED WITH MANNOHEXAOSE: PROBING THE MECHANISM OF LIGAND RECOGNITION BY FAMILY 29 CARBOHYDRATE BINDING MODULES
1w8w CBM29-2 MUTANT Y46A: PROBING THE MECHANISM OF LIGAND RECOGNITION BY FAMILY 29 CARBOHYDRATE BINDING MODULES
1w8z CBM29-2 MUTANT K85A: PROBING THE MECHANISM OF LIGAND RECOGNITION BY FAMILY 29 CARBOHYDRATE BINDING MODULES
1w90 CBM29-2 MUTANT D114A: PROBING THE MECHANISM OF LIGAND RECOGNITION BY FAMILY 29 CARBOHYDRATE BINDING MODULES
1w9f CBM29-2 MUTANT R112A: PROBING THE MECHANISM OF LIGAND RECOGNITION BY FAMILY 29 CARBOHYDRATE BINDING MODULES