Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF AN ARCHAEAL FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE WITH THE CATALYTIC LYS COVALENTLY BOUND TO THE CARBINOLAMINE INTERMEDIATE OF THE SUBSTRATE.
 
Authors :  E. Lorentzen, B. Siebers, R. Hensel, E. Pohl
Date :  14 Mar 11  (Deposition) - 27 Apr 11  (Release) - 27 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.93
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Lyase, Glycolysis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Lorentzen, B. Siebers, R. Hensel, E. Pohl
Mechanism Of The Schiff Base Forming Fructose-1, 6-Bisphosphate Aldolase: Structural Analysis Of Reaction Intermediates.
Biochemistry V. 44 4222 2005
PubMed-ID: 15766250  |  Reference-DOI: 10.1021/BI048192O

(-) Compounds

Molecule 1 - FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS 1
    Chains: A, B, C, D, E, F, G, H, I, J
    EC Number: 4.1.2.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET15B
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: THERMOPROTEUS TENAX
    Organism Taxid: 2271
    Other Details: K177 COVALENTLY LINKED TO THE CARBINOLAMINE FORM OF THE SUBSTRATE FBP
    Synonym: FRUCTOSE-BIPHOSPHATE ALDOLASE CLASS I, FBP ALDOLASE

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric Unit (1, 10)
No.NameCountTypeFull Name
1M2P10Ligand/IonD-MANNITOL-1,6-DIPHOSPHATE
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1M2P5Ligand/IonD-MANNITOL-1,6-DIPHOSPHATE
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1M2P5Ligand/IonD-MANNITOL-1,6-DIPHOSPHATE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:22 , ASP A:24 , HIS A:25 , HIS A:29 , TRP A:144 , ARG A:148 , LYS A:177 , LYS A:179 , SER A:202 , GLY A:203 , GLY A:204 , ALA A:229 , VAL A:230 , GLY A:231 , ARG A:232 , HOH A:2078 , HOH A:2079 , HOH A:2154 , HOH A:2155 , HOH A:2156 , HOH A:2157 , HOH A:2158BINDING SITE FOR RESIDUE M2P A 270
02AC2SOFTWAREALA B:22 , ASP B:24 , HIS B:25 , HIS B:29 , TRP B:144 , ARG B:148 , LYS B:177 , LYS B:179 , SER B:202 , GLY B:203 , GLY B:204 , ALA B:229 , VAL B:230 , GLY B:231 , ARG B:232 , HOH B:2084 , HOH B:2085 , HOH B:2170 , HOH B:2171 , HOH B:2172 , HOH B:2173BINDING SITE FOR RESIDUE M2P B 270
03AC3SOFTWAREALA C:22 , ASP C:24 , HIS C:25 , HIS C:29 , TRP C:144 , ARG C:148 , LYS C:177 , LYS C:179 , SER C:202 , GLY C:203 , GLY C:204 , ALA C:229 , VAL C:230 , GLY C:231 , ARG C:232 , HOH C:2077 , HOH C:2133 , HOH C:2134 , HOH C:2135 , HOH C:2136BINDING SITE FOR RESIDUE M2P C 270
04AC4SOFTWAREALA D:22 , ASP D:24 , HIS D:25 , HIS D:29 , TRP D:144 , ARG D:148 , LYS D:177 , LYS D:179 , SER D:202 , GLY D:203 , GLY D:204 , ALA D:229 , VAL D:230 , GLY D:231 , ARG D:232 , HOH D:2070 , HOH D:2071 , HOH D:2124 , HOH D:2125 , HOH D:2126BINDING SITE FOR RESIDUE M2P D 270
05AC5SOFTWAREALA E:22 , ASP E:24 , HIS E:25 , HIS E:29 , TRP E:144 , ARG E:148 , LYS E:177 , LYS E:179 , SER E:202 , GLY E:203 , GLY E:204 , ALA E:229 , VAL E:230 , GLY E:231 , ARG E:232 , HOH E:2092 , HOH E:2093 , HOH E:2170 , HOH E:2171 , HOH E:2173BINDING SITE FOR RESIDUE M2P E 270
06AC6SOFTWAREALA F:22 , ASP F:24 , HIS F:25 , HIS F:29 , TRP F:144 , PHE F:146 , ARG F:148 , LYS F:177 , LYS F:179 , SER F:202 , GLY F:203 , GLY F:204 , ALA F:229 , VAL F:230 , GLY F:231 , ARG F:232 , HOH F:2062 , HOH F:2063 , HOH F:2120 , HOH F:2121 , HOH F:2122BINDING SITE FOR RESIDUE M2P F 270
07AC7SOFTWAREALA G:22 , ASP G:24 , HIS G:25 , HIS G:29 , TRP G:144 , PHE G:146 , ARG G:148 , LYS G:177 , LYS G:179 , SER G:202 , GLY G:203 , GLY G:204 , ALA G:229 , VAL G:230 , GLY G:231 , ARG G:232 , HOH G:2080 , HOH G:2081 , HOH G:2145 , HOH G:2146 , HOH G:2147 , HOH G:2148BINDING SITE FOR RESIDUE M2P G 270
08AC8SOFTWAREALA H:22 , ASP H:24 , HIS H:25 , HIS H:29 , TRP H:144 , ARG H:148 , LYS H:177 , LYS H:179 , SER H:202 , GLY H:203 , GLY H:204 , ALA H:229 , VAL H:230 , GLY H:231 , ARG H:232 , HOH H:2073 , HOH H:2074 , HOH H:2147 , HOH H:2148 , HOH H:2149 , HOH H:2150BINDING SITE FOR RESIDUE M2P H 270
09AC9SOFTWAREALA I:22 , ASP I:24 , HIS I:25 , HIS I:29 , TRP I:144 , ARG I:148 , LYS I:177 , LYS I:179 , SER I:202 , GLY I:203 , GLY I:204 , ALA I:229 , VAL I:230 , GLY I:231 , ARG I:232 , HOH I:2084 , HOH I:2085 , HOH I:2151 , HOH I:2156 , HOH I:2157 , HOH I:2158BINDING SITE FOR RESIDUE M2P I 270
10BC1SOFTWAREASP J:24 , HIS J:25 , HIS J:29 , TRP J:144 , ARG J:148 , LYS J:177 , LYS J:179 , SER J:202 , GLY J:203 , GLY J:204 , ALA J:229 , VAL J:230 , GLY J:231 , ARG J:232 , HOH J:2087 , HOH J:2089 , HOH J:2171 , HOH J:2172 , HOH J:2173 , HOH J:2174BINDING SITE FOR RESIDUE M2P J 270

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YCE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2YCE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YCE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2YCE)

(-) Exons   (0, 0)

(no "Exon" information available for 2YCE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d2ycea1 A:3-252 Archaeal fructose 1,6-bisphosphate aldolase                                                                                                                                                                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yce A   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSFPRGGKVVNETAPEIVAYAARIALELGSDAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252


Chain B from PDB  Type:PROTEIN  Length:251
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:251
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252 
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVYG 253
               SCOP domains d2yceb_ B: Archaeal fructose 1,6-bisphosphate aldolase                                                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yce B   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSFPRGGKVVNETAPEIVAYAARIALELGSDAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVYG 253
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252 


Chain C from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d2ycec_ C: Archaeal fructose 1,6-bisphosphate aldolase                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yce C   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSFPRGGKVVNETAPEIVAYAARIALELGSDAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252


Chain D from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d2yced_ D: Archaeal fructose 1,6-bisphosphate aldolase                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yce D   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSFPRGGKVVNETAPEIVAYAARIALELGSDAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252


Chain E from PDB  Type:PROTEIN  Length:255
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:255
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252     
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVYGGKKL 257
               SCOP domains d2ycee_ E: Archaeal fructose 1,6-bisphosphate aldolase                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yce E   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSFPRGGKVVNETAPEIVAYAARIALELGSDAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVYGGKKL 257
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252     


Chain F from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d2ycef_ F: Archaeal fructose 1,6-bisphosphate aldolase                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhh...eeeee...........hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yce F   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSFPRGGKVVNETAPEIVAYAARIALELGSDAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252


Chain G from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d2yceg_ G: Archaeal fructose 1,6-bisphosphate aldolase                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yce G   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSFPRGGKVVNETAPEIVAYAARIALELGSDAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252


Chain H from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d2yceh_ H: Archaeal fructose 1,6-bisphosphate aldolase                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...eeeeehhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yce H   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSFPRGGKVVNETAPEIVAYAARIALELGSDAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252


Chain I from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d2ycei_ I: Archaeal fructose 1,6-bisphosphate aldolase                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yce I   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSFPRGGKVVNETAPEIVAYAARIALELGSDAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252


Chain J from PDB  Type:PROTEIN  Length:250
 aligned with ALF1_THETK | P58315 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:250
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
           ALF1_THETK     3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
               SCOP domains d2ycej_ J: Archaeal fructose 1,6-bisphosphate aldolase                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhh.....eeee.ee...........ee..hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yce J   3 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSFPRGGKVVNETAPEIVAYAARIALELGSDAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 252
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 10)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0 ; only for superseded entry 1W8R: 1,10)

(no "CATH Domain" information available for 2YCE, only for superseded entry 1W8R replaced by 2YCE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2YCE)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (ALF1_THETK | P58315)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004332    fructose-bisphosphate aldolase activity    Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde-3-phosphate.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    M2P  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2yce)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2yce
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  ALF1_THETK | P58315
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  4.1.2.13
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  ALF1_THETK | P58315
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALF1_THETK | P58315: 1ojx 1ok4 1ok6 1w8s

(-) Related Entries Specified in the PDB File

1ojx CRYSTAL STRUCTURE OF AN ARCHAEAL FRUCTOSE 1,6- BISPHOSPHATE ALDOLASE
1ok4 ARCHAEAL FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE COVALENTLY BOUND TO THE SUBSTRATE DIHYDROXYACETONE PHOSPHATE
1ok6 ORTHORHOMBIC CRYSTAL FORM OF AN ARCHAEAL FRUCTOSE 1,6 -BISPHOSPHATE ALDOLASE
1w8s THE MECHANISM OF THE SCHIFF BASE FORMING FRUCTOSE-1, 6-BISPHOSPHATE ALDOLASE: STRUCTURAL ANALYSIS OF REACTION INTERMEDIATES.