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(-) Description

Title :  T.CELER L30E E90A VARIANT
 
Authors :  C. F. Lee, K. M. Lee, S. H. Chan, M. D. Allen, M. Bycroft, K. B. Wong
Date :  22 Jul 04  (Deposition) - 08 Apr 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Ribosomal Protein, Electrostatic Interactions, Thermostability, Protein Engineering (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. F. Lee, M. D. Allen, M. Bycroft, K. B. Wong
Electrostatic Interactions Contribute To Reduced Heat Capacity Change Of Unfolding In A Thermophilic Ribosomal Protein L30E
J. Mol. Biol. V. 348 419 2005
PubMed-ID: 15811378  |  Reference-DOI: 10.1016/J.JMB.2005.02.052

(-) Compounds

Molecule 1 - 50S RIBOSOMAL PROTEIN L30E
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET8C
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: DE3 PLYSS
    Mutation: YES
    Organism Scientific: THERMOCOCCUS CELER
    Organism Taxid: 2264

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1W41)

(-) Sites  (0, 0)

(no "Site" information available for 1W41)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1W41)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1W41)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1W41)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RIBOSOMAL_L30E_1PS00709 Ribosomal protein L30e signature 1.RL30E_THECE14-38  1A:13-37
2RIBOSOMAL_L30E_2PS00993 Ribosomal protein L30e signature 2.RL30E_THECE70-90  1A:69-89

(-) Exons   (0, 0)

(no "Exon" information available for 1W41)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:100
 aligned with RL30E_THECE | P29160 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:100
                                    10        20        30        40        50        60        70        80        90       100
          RL30E_THECE     1 MVDFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDPGESRILALGGK 100
               SCOP domains -d1w41a1 A:1-99 Eukaryotic ribosomal protein L30 (L30e)                                              SCOP domains
               CATH domains 1w41A00 A:0-99  [code=3.30.1330.30, no name defined]                                                 CATH domains
               Pfam domains --Ribosomal_L7Ae-1w41A01 A:2-95                                                                 ---- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhheeeehhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh..eeee..hhhhhhhhh.......eeeeee....hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------RIBOSOMAL_L30E_1         -------------------------------RIBOSOMAL_L30E_2     ---------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 1w41 A   0 MVDFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDPGASRILALGGK  99
                                     9        19        29        39        49        59        69        79        89        99
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: RNA_ribose_bind (78)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (RL30E_THECE | P29160)
molecular function
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

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  RL30E_THECE | P29160
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RL30E_THECE | P29160: 1go0 1go1 1h7m 1w3e 1w40 1w42 2bo1 3lfo 3n4y 3n4z 3ra5 3ra6

(-) Related Entries Specified in the PDB File

1go0 NMR STRUCTURE OF RIBOSOMAL PROTEIN L30E FROM THERMOCOCCUS CELER.
1go1 NMR STRUCTURE OF RIBOSOMAL PROTEIN L30E FROM THERMOCOCCUS CELER.
1h7m CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L30E FROM THERMOCOCCUS CELER.
1w3e RIBOSOMAL L30E OF THERMOCOCCUS CELER, P59A MUTANT
1w40 T. CELER L30E K9A VARIANT
1w42 T. CELER L30E R92A VARIANT