1VQD - JenaLib

Title :   GENE V PROTEIN MUTANT WITH VAL 35 REPLACED BY ILE 35 AND ILE 47 REPLACED BY LEU 47 (V35I, I47L)

Authors :   M. M. Skinner, T. C. Terwilliger

Date :   14 Aug 96 (Deposition) - 12 Feb 97 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.82

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Dna-Binding Protein, Gene V, Mutant (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. M. Skinner, T. C. Terwilliger
Potential Use Of Additivity Of Mutational Effects In Simplifying Protein Engineering.
Proc. Natl. Acad. Sci. Usa V. 93 10753 1996
PubMed-ID: 8855252 | Reference-DOI: 10.1073/PNAS.93.20.10753
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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PROSITE Motifs (0, 0)

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Sequences/Alignments

Asymmetric Unit

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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:86
 aligned with G5P_BPF1 | P69543 from UniProtKB/Swiss-Prot  Length:87

    Alignment length:86
                                    10        20        30        40        50        60        70        80      
              G5P_BPF1    1 MIKVEIKPSQAQFTTRSGVSRQGKPYSLNEQLCYVDLGNEYPVLVKITLDEGQPAYAPGLYTVHLSSFKVGQFGSLMIDRLRLVPA 86
               SCOP domains d1vqda_ A: Gene V protein                                                              SCOP domains
               CATH domains 1vqdA00 A:1-86 Nucleic acid-binding proteins                                           CATH domains
               Pfam domains -Phage_DNA_bind-1vqdA01 A:2-86                                                         Pfam domains
         Sec.struct. author ...eee.hhh...eeeeee.....eeeeeeeeeee.......eeeeee..........eeeee.hhheee.....eee....eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                  1vqd A  1 MIKVEIKPSQAQFTTRSGVSRQGKPYSLNEQLCYIDLGNEYPVLVKLTLDEGQPAYAPGLYTVHLSSFKVGQFGSLMIDRLRLVPA 86
                                    10        20        30        40        50        60        70        80

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (4, 4)

Asymmetric Unit(hide GO term definitions)

Chain A (G5P_BPF1 | P69543)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003697	single-stranded DNA binding	Interacting selectively and non-covalently with single-stranded DNA.
biological process
	GO:0006260	DNA replication	The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
	GO:0039684	rolling circle single-stranded viral DNA replication	A rolling circle viral DNA replication that begins with a single-stranded viral DNA genome.

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Description