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(-) Description

Title :  CRYSTAL STRUCTURE OF A DUF72 FAMILY PROTEIN (EF0366) FROM ENTEROCOCCUS FAECALIS V583 AT 2.52 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  23 Nov 04  (Deposition) - 07 Dec 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.52
Chains :  Asym./Biol. Unit :  A
Keywords :  Tim Alpha/Beta Barrel Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Ef0366) From Enterococcus Faecalis V583 At 2. 52 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN (HYPOTHETICAL PROTEIN EF0366)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: EF0366
    Organism Scientific: ENTEROCOCCUS FAECALIS
    Organism Taxid: 226185
    Strain: V583

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric/Biological Unit (3, 14)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2UNL1Ligand/IonUNKNOWN LIGAND
3ZN4Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:216 , GLN A:257BINDING SITE FOR RESIDUE ZN A 278
2AC2SOFTWAREHIS A:-2 , HIS A:0 , SER A:247 , ASP A:250 , HOH A:330BINDING SITE FOR RESIDUE ZN A 279
3AC3SOFTWAREHIS A:128BINDING SITE FOR RESIDUE ZN A 280
4AC4SOFTWAREGLU A:25 , HIS A:29 , HOH A:337BINDING SITE FOR RESIDUE ZN A 281
5AC5SOFTWARECYS A:71BINDING SITE FOR RESIDUE UNL A 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VPY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VPY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VPY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VPY)

(-) Exons   (0, 0)

(no "Exon" information available for 1VPY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:251
 aligned with Q838R9_ENTFA | Q838R9 from UniProtKB/TrEMBL  Length:277

    Alignment length:269
                                1                                                                                                                                                                                                                                                                        
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256         
         Q838R9_ENTFA     - ----MIRLGLTSFSEHDYLTGKKRSTLYEYASHLPLVEMDTAYYGIPPKERVAEWVKAVPENFRFVMKVYSGISCQGEWQTYYASEEEMITAFLESMAPLIESKKLFAFLVQFSGTFGCTKENVAYLQKIRHWFKDLPIAIELRNNSWYQPNFVKQMLQFMKENQFSLVIVDEPQIPTNPVPFYPYVTNPNLVLFRFHGRNAAGWLANDAEWRKKRTLYHYNTQEIADLSEAVLKMSQEAKEVGVIFNNNSGGDAAENALQMQKVLNLS 265
               SCOP domains d1vpya_ A: Hyp          othetical protein EF0366                                                                                                                                                                                                                              SCOP domains
               CATH domains 1vpyA00 A:-3-2          65 Hypothetical protein tm1631.                                                                                                                                                                                                                       CATH domains
               Pfam domains --------------          DUF72-1vpyA01 A:21-262                                                                                                                                                                                                                            --- Pfam domains
         Sec.struct. author ....eeeeee....----------.hhhhhhhhh.eeeehhhhhh..hhhhhhhhhhh.....eeeee.........hhhhh..hhhhhhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhh....eeee..hhhhhh..hhhhhhhhhhhh..ee.eee....................eeeee........--------........hhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vpy A  -3 HHHHmIRLGLTSFS----------STLYEYASHLPLVEmDTAYYGIPPKERVAEWVKAVPENFRFVmKVYSGISCQGEWQTYYASEEEmITAFLESmAPLIESKKLFAFLVQFSGTFGCTKENVAYLQKIRHWFKDLPIAIELRNNSWYQPNFVKQmLQFmKENQFSLVIVDEPQIPTNPVPFYPYVTNPNLVLFRFHGRNAAGW--------KKRTLYHYNTQEIADLSEAVLKmSQEAKEVGVIFNNNSGGDAAENALQmQKVLNLS 265
                                |    6   |     -    |   26        36        46        56      | 66        76        86      | 96       106       116       126       136       146      |156|      166       176       186       196    |    -   |   216       226     | 236       246       256 |       
                                |       10         21            35-MSE                      63-MSE                85-MSE  93-MSE                                                     153-MSE                                         201      210                   232-MSE                   258-MSE   
                                1-MSE                                                                                                                                                     157-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF72] (3)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1VPY)

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 Related Entries

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UniProtKB/TrEMBL
        Q838R9_ENTFA | Q838R9: 1ztv

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