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Title :   CRYSTAL STRUCTURE OF ACYL-COA HYDROLASE (NP_241664.1) FROM BACILLUS HALODURANS AT 1.66 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   11 Nov 04 (Deposition) - 14 Dec 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.66

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B,C  (2x)

Keywords :   Np_241664. 1, Acyl-Coa Hydrolase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Acyl-Coa Hydrolase (Np_241664. 1) From Bacillus Halodurans At 1. 66 A Resolution
To Be Published
PubMed: search

Molecule 1 - ACYL-COA HYDROLASE
	Chains	:	A, B, C
	EC Number	:	3.1.2.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BH0798
	Organism Scientific	:	BACILLUS HALODURANS
	Organism Taxid	:	272558
	Strain	:	C-125

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 13)

No.	Name	Count	Type	Full Name
1	COA	2	Ligand/Ion	COENZYME A
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (3, 26)

No.	Name	Count	Type	Full Name
1	COA	4	Ligand/Ion	COENZYME A
2	MSE	20	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	2	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:9 , GLY B:84 , ARG B:85 , THR B:86 , SER B:87 , HOH B:184	BINDING SITE FOR RESIDUE PO4 B 158
2	AC2	SOFTWARE	THR A:28 , ILE A:29 , GLY A:31 , THR A:56 , ALA A:57 , SER A:58 , ASP A:63 , PHE A:64 , SER A:66 , SER A:67 , GLY A:84 , ARG A:85 , THR A:86 , SER A:87 , THR A:107 , THR A:113 , VAL A:115 , LYS A:147 , HOH A:231	BINDING SITE FOR RESIDUE COA A 200
3	AC3	SOFTWARE	ILE B:29 , ASP B:63 , PHE B:64 , LYS B:65 , SER B:66 , SER B:67 , HOH B:222 , THR C:56 , ALA C:57 , SER C:58 , GLY C:84 , ARG C:85 , THR C:86 , SER C:87 , THR C:113 , VAL C:115 , PRO C:123 , HOH C:243 , HOH C:271 , HOH C:293 , HOH C:296 , HOH C:299	BINDING SITE FOR RESIDUE COA C 200

(no "SS Bond" information available for 1VPM)

(no "Cis Peptide Bond" information available for 1VPM)

(no "SAP(SNP)/Variant" information available for 1VPM)

(no "PROSITE Motif" information available for 1VPM)

(no "Exon" information available for 1VPM)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:155
 aligned with Q9KEQ1_BACHD | Q9KEQ1 from UniProtKB/TrEMBL  Length:157

    Alignment length:155
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151     
         Q9KEQ1_BACHD     2 IQSYPVERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHANSAVVTASIDSVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNNLLTGERTLTTESFLTMVAVDESGKPKPVPQVEPQTEEEKRLYETAPARKENRKKRAAL 156
               SCOP domains d1vpma_ A: Acyl-CoA hydrolase BH0798                                                                                                                        SCOP domains
               CATH domains 1vpmA00 A:2-156  [code=3.10.129.10, no name defined]                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhh.eeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhh.eeeeeee............eeeeeeeeeeee...eeeeeeeeeeee.....eeeeeeeeeeeeee..........eee..hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vpm A   2 IQSYPVERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAmKHANSAVVTASIDSVDFKSSATVGDALELEGFVTHTGRTSmEVYVRVHSNNLLTGERTLTTESFLTmVAVDESGKPKPVPQVEPQTEEEKRLYETAPARKENRKKRAAL 156
                                    11        21        31        41     |  51        61        71        81      | 91       101       111  |    121       131       141       151     
                                                                        47-MSE                                   88-MSE                   114-MSE

Chain B from PDB  Type:PROTEIN  Length:151
 aligned with Q9KEQ1_BACHD | Q9KEQ1 from UniProtKB/TrEMBL  Length:157

    Alignment length:151
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152 
         Q9KEQ1_BACHD     3 QSYPVERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHANSAVVTASIDSVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNNLLTGERTLTTESFLTMVAVDESGKPKPVPQVEPQTEEEKRLYETAPARKENRKKR 153
               SCOP domains d1vpmb_ B: Acyl-CoA hydrolase BH0798                                                                                                                    SCOP domains
               CATH domains 1vpmB00 B:3-153  [code=3.10.129.10, no name defined]                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhheeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhh.eeeeeee..ee.........eeeeeeeeeee...eeeeeeeeeee......eeeeeeeeeeeeee..........eee..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vpm B   3 QSYPVERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAmKHANSAVVTASIDSVDFKSSATVGDALELEGFVTHTGRTSmEVYVRVHSNNLLTGERTLTTESFLTmVAVDESGKPKPVPQVEPQTEEEKRLYETAPARKENRKKR 153
                                    12        22        32        42    |   52        62        72        82     |  92       102       112 |     122       132       142       152 
                                                                       47-MSE                                   88-MSE                   114-MSE

Chain C from PDB  Type:PROTEIN  Length:154
 aligned with Q9KEQ1_BACHD | Q9KEQ1 from UniProtKB/TrEMBL  Length:157

    Alignment length:154
                             1                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149    
         Q9KEQ1_BACHD     - -MIQSYPVERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHANSAVVTASIDSVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNNLLTGERTLTTESFLTMVAVDESGKPKPVPQVEPQTEEEKRLYETAPARKENRKKR 153
               SCOP domains d1vpmc_ C: Acyl-CoA hydrolase BH0798                                                                                                                       SCOP domains
               CATH domains 1vpmC00 C:0-153  [code=3.10.129.10, no name defined]                                                                                                       CATH domains
           Pfam domains (1) --------------------------4HBT-1vpmC01 C:26-103                                                         -------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --------------------------4HBT-1vpmC02 C:26-103                                                         -------------------------------------------------- Pfam domains (2)
           Pfam domains (3) --------------------------4HBT-1vpmC03 C:26-103                                                         -------------------------------------------------- Pfam domains (3)
         Sec.struct. author .....ee.hhh.eeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhh.eeeeeee..ee.........eeeeeeeeeee...eeeeeeeeeee......eeeeeeeeeeeeee...........ee..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vpm C   0 HmIQSYPVERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAmKHANSAVVTASIDSVDFKSSATVGDALELEGFVTHTGRTSmEVYVRVHSNNLLTGERTLTTESFLTmVAVDESGKPKPVPQVEPQTEEEKRLYETAPARKENRKKR 153
                             |       9        19        29        39       |49        59        69        79        89        99       109    |  119       129       139       149    
                             1-MSE                                        47-MSE                                   88-MSE                   114-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Thioesterase/thiol ester dehydrase-isomerase (151)

Superfamily: Thioesterase/thiol ester dehydrase-isomerase (151)

Family: 4HBT-like (28)

Protein domain: Acyl-CoA hydrolase BH0798 (2)

Bacillus halodurans [TaxId: 86665] (2)

1a	d1vpma_	A:
1b	d1vpmb_	B:
1c	d1vpmc_	C:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Roll (3276)

Topology: Thiol Ester Dehydrase; Chain A (90)

Homologous Superfamily: [code=3.10.129.10, no name defined] (90)

Bacillus halodurans c-125. Organism_taxid: 272558. Strain: c-125. (1)

1a	1vpmB00	B:3-153
1b	1vpmC00	C:0-153
1c	1vpmA00	A:2-156

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: HotDog (52)

Family: 4HBT (31)

Bacillus halodurans (2)

1a	4HBT-1vpmC01	C:26-103
1b	4HBT-1vpmC02	C:26-103
1c	4HBT-1vpmC03	C:26-103

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (Q9KEQ1_BACHD | Q9KEQ1)

molecular function
	GO:0016787		hydrolase activity		Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

Asymmetric Unit
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Description

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Ligands, Modified Residues, Ions (3, 13)

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SS Bonds (0, 0)

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