1VM9 - JenaLib

Title :   THE X-RAY STRUCTURE OF THE CYS84ALA CYS85ALA DOUBLE MUTANT OF THE [2FE-2S] FERREDOXIN SUBUNIT OF TOLUENE-4-MONOOXYGENASE FROM PSEUDOMONAS MENDOCINA KR1

Authors :   G. E. Wesenberg, D. W. Smith, G. N. Phillips Jr. , C. A. Bingman, S. T. M. Allard, L. A. Moe, B. G. Fox, Center For Eukaryotic Structural Genomics (Cesg)

Date :   13 Sep 04 (Deposition) - 21 Sep 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.48

Chains :   Asym./Biol. Unit : A

Keywords :   Structural Genomics, Cesg, Protein Structure Initiative, Psi, Ferredoxin, Fes, [2Fe-2S] Cluster, Rieske Protein, Toluene-4-Monooxygenase Subunit, Center For Eukaryotic Structural Genomics, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. A. Moe, C. A. Bingman, G. E. Wesenberg, G. N. Phillips, B. G. Fox
Structure Of T4Moc, The Rieske-Type Ferredoxin Component Of Toluene 4-Monooxygenase.
Acta Crystallogr. , Sect. D V. 62 476 2006
PubMed-ID: 16627939 | Reference-DOI: 10.1107/S0907444906006056
(for further references see the PDB file header)

Compounds

Molecule 1 - TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN C
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PT4CD15BTET(C84AC85A)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	TMOC
	Mutation	:	YES
	Organism Scientific	:	PSEUDOMONAS MENDOCINA
	Organism Taxid	:	300
	Strain	:	KR1

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:53 , HOH A:903 , HOH A:904 , HOH A:905 , HOH A:906 , HOH A:907	BINDING SITE FOR RESIDUE MG A 901
2	AC2	SOFTWARE	ASP A:96 , ASP A:97 , HOH A:908 , HOH A:909 , HOH A:910 , HOH A:911	BINDING SITE FOR RESIDUE MG A 902
3	AC3	SOFTWARE	CYS A:45 , HIS A:47 , GLN A:48 , CYS A:64 , HIS A:67 , TRP A:69	BINDING SITE FOR RESIDUE FES A 900
4	AC4	SOFTWARE	SER A:56 , THR A:63 , ARG A:65 , HOH A:1006	BINDING SITE FOR RESIDUE EDO A 801
5	AC5	SOFTWARE	TRP A:69 , PRO A:81 , ASP A:83	BINDING SITE FOR RESIDUE EDO A 802
6	AC6	SOFTWARE	VAL A:14 , ASN A:32 , SER A:33 , GLU A:34 , GLY A:37 , HOH A:1016	BINDING SITE FOR RESIDUE EDO A 803

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:109
 aligned with TMOC_PSEME | Q00458 from UniProtKB/Swiss-Prot  Length:112

    Alignment length:109
                                    11        21        31        41        51        61        71        81        91       101         
           TMOC_PSEME     2 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINPDDCCLAEYPVEVKGDDIYVSTKGILPNKA 110
               SCOP domains d1vm9a_ A: Toluene-4-monooxygenase system protein C, TmoC                                                     SCOP domains
               CATH domains 1vm9A00 A:2-110 'Rieske'-like iron-sulphur domains                                                            CATH domains
               Pfam domains Rieske-1vm9A01 A:2-96                                                                          -------------- Pfam domains
         Sec.struct. author ..eeeee.hhh...eeeeee.....eeeeeee...eeeeee........hhhhheee..eee......eee...............ee.eeee..eeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --RIESKE  PDB: A:4-100 UniProt: 4-100                                                              ---------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1vm9 A   2 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINPDDAALAEYPVEVKGDDIYVSTKGILPNKA 110
                                    11        21        31        41        51        61        71        81        91       101

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (TMOC_PSEME | Q00458)

molecular function
	GO:0051537	2 iron, 2 sulfur cluster binding	Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
	GO:0051536	iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0019439	aromatic compound catabolic process	The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0042203	toluene catabolic process	The chemical reactions and pathways resulting in the breakdown of toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products.

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