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(-) Description

Title :  SOLUTION STRUCTURE OF T4MOC, THE RIESKE FERREDOXIN COMPONENT OF THE TOLUENE 4-MONOOXYGENASE COMPLEX
 
Authors :  L. Skjeldal, F. C. Peterson, J. F. Doreleijers, L. A. Moe, J. D. Pikus, B. F. Volkman, W. M. Westler, J. L. Markley, B. G. Fox
Date :  03 Mar 04  (Deposition) - 07 Sep 04  (Release) - 09 Mar 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Rieske [2Fe-2S] Domain, Ferredoxin, Pfam Pf00355, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Skjeldal, F. C. Peterson, J. F. Doreleijers, L. A. Moe, J. D. Pikus, W. M. Westler, J. L. Markley, B. F. Volkman, B. G. Fox
Solution Structure Of T4Moc, The Rieske Ferredoxin Componen Of The Toluene 4-Monooxygenase Complex
J. Biol. Inorg. Chem. V. 9 945 2004
PubMed-ID: 15452777  |  Reference-DOI: 10.1007/S00775-004-0594-4
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN C
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PJP01
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TMOC
    Organism Scientific: PSEUDOMONAS MENDOCINA
    Organism Taxid: 300
    Strain: KR1
    Synonym: T4MOC

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1FES1Ligand/IonFE2/S2 (INORGANIC) CLUSTER
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1FES1Ligand/IonFE2/S2 (INORGANIC) CLUSTER

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:45 , PRO A:46 , HIS A:47 , CYS A:64 , ARG A:65 , ALA A:66 , HIS A:67 , CYS A:84BINDING SITE FOR RESIDUE FES A 113

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SJG)

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Asn A:80 -Pro A:81

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SJG)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RIESKEPS51296 Rieske [2Fe-2S] iron-sulfur domain profile.TMOC_PSEME4-100  1A:4-100
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RIESKEPS51296 Rieske [2Fe-2S] iron-sulfur domain profile.TMOC_PSEME4-100  1A:4-100

(-) Exons   (0, 0)

(no "Exon" information available for 1SJG)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:112
 aligned with TMOC_PSEME | Q00458 from UniProtKB/Swiss-Prot  Length:112

    Alignment length:112
                                    10        20        30        40        50        60        70        80        90       100       110  
           TMOC_PSEME     1 MSFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINPDDCCLAEYPVEVKGDDIYVSTKGILPNKAHS 112
               SCOP domains d1sjga_ A: Toluene-4-monooxygenase system protein C, TmoC                                                        SCOP domains
               CATH domains 1sjgA00 A:1-112 'Rieske'-like iron-sulphur domains                                                               CATH domains
               Pfam domains -Rieske-1sjgA01 A:2-96                                                                          ---------------- Pfam domains
         Sec.struct. author ..eeeeee.......eeeeee.....eeeeee.....eeeee........hhhhh.ee..eee......eee....ee.........ee.eeee..eeeee........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---RIESKE  PDB: A:4-100 UniProt: 4-100                                                              ------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 1sjg A   1 MSFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINPDDCCLAEYPVEVKGDDIYVSTKGILPNKAHS 112
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: ISP-domain (54)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (TMOC_PSEME | Q00458)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0019439    aromatic compound catabolic process    The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0042203    toluene catabolic process    The chemical reactions and pathways resulting in the breakdown of toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products.

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  1sjg
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TMOC_PSEME | Q00458: 1vm9 2q3w 4p1b 4p1c

(-) Related Entries Specified in the PDB File

1fqt BPHF, RIESKE FERREDOXIN OF BIPHENYL DIOXYGENASE