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Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF FERRITIN (TM1128) FROM THERMOTOGA MARITIMA AT 2.00 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   23 Jul 04 (Deposition) - 17 Aug 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H  (3x)

Keywords :   Tm1128, Ferritin, Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Joint Center For Structural Genomics, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Ferritin (Tm1128) From Thermotoga Maritima At 2. 00 A Resolution
To Be Published
PubMed: search

Molecule 1 - FERRITIN
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TM1128
	Organism Scientific	:	THERMOTOGA MARITIMA
	Organism Taxid	:	243274
	Strain	:	MSB8

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (3x)	:	A	B	C	D	E	F	G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 31)

No.	Name	Count	Type	Full Name
1	FE	8	Ligand/Ion	FE (III) ION
2	GOL	9	Ligand/Ion	GLYCEROL
3	SO4	14	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 69)

No.	Name	Count	Type	Full Name
1	FE	-1	Ligand/Ion	FE (III) ION
2	GOL	27	Ligand/Ion	GLYCEROL
3	SO4	42	Ligand/Ion	SULFATE ION

Asymmetric Unit (31, 31)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:19 , GLU A:52 , HIS A:55 , HOH A:254 , HOH A:282 , HOH A:283	BINDING SITE FOR RESIDUE FE A 200
02	AC2	SOFTWARE	GLU B:19 , GLU B:52 , HIS B:55 , HOH B:286 , HOH B:308 , HOH B:309	BINDING SITE FOR RESIDUE FE B 200
03	AC3	SOFTWARE	GLU C:19 , GLU C:52 , HIS C:55 , HOH C:263 , HOH C:264 , HOH C:270	BINDING SITE FOR RESIDUE FE C 200
04	AC4	SOFTWARE	GLU D:19 , GLU D:52 , HIS D:55 , HOH D:247 , HOH D:260 , HOH D:262	BINDING SITE FOR RESIDUE FE D 200
05	AC5	SOFTWARE	GLU E:19 , GLU E:52 , HIS E:55 , HOH E:297 , HOH E:320	BINDING SITE FOR RESIDUE FE E 200
06	AC6	SOFTWARE	GLU F:19 , GLU F:52 , HIS F:55 , HOH F:220 , HOH F:241 , HOH F:259	BINDING SITE FOR RESIDUE FE F 200
07	AC7	SOFTWARE	GLU G:19 , GLU G:52 , HIS G:55 , HOH G:238	BINDING SITE FOR RESIDUE FE G 200
08	AC8	SOFTWARE	GLU H:19 , GLU H:52 , HIS H:55 , HOH H:237 , HOH H:238	BINDING SITE FOR RESIDUE FE H 200
09	AC9	SOFTWARE	GLU A:97 , THR A:100 , GLU A:133 , ARG C:66	BINDING SITE FOR RESIDUE SO4 A 201
10	BC1	SOFTWARE	ASN A:147 , GLN A:149 , SER A:151 , GLN B:149 , SER B:151 , SER D:151 , GLN E:149 , SER E:151 , HOH E:252	BINDING SITE FOR RESIDUE SO4 A 202
11	BC2	SOFTWARE	SER B:5 , GLU B:6 , HOH B:208 , HOH B:314	BINDING SITE FOR RESIDUE SO4 B 201
12	BC3	SOFTWARE	ARG B:18 , PHE B:98 , HOH B:293	BINDING SITE FOR RESIDUE SO4 B 202
13	BC4	SOFTWARE	GLY B:84 , ILE B:85 , LYS B:86 , HOH B:215	BINDING SITE FOR RESIDUE SO4 B 203
14	BC5	SOFTWARE	ARG C:18 , PHE C:98	BINDING SITE FOR RESIDUE SO4 C 201
15	BC6	SOFTWARE	GLY D:84 , ILE D:85 , LYS D:86 , HOH D:243	BINDING SITE FOR RESIDUE SO4 D 201
16	BC7	SOFTWARE	GLU D:97 , THR D:100 , GLU D:133 , VAL E:3 , ARG E:66 , HOH E:321	BINDING SITE FOR RESIDUE SO4 D 202
17	BC8	SOFTWARE	VAL H:3 , ARG H:66 , GLU H:97 , THR H:100 , GLU H:133	BINDING SITE FOR RESIDUE SO4 H 201
18	BC9	SOFTWARE	ARG A:18 , PHE A:98	BINDING SITE FOR RESIDUE SO4 A 203
19	CC1	SOFTWARE	SER A:5 , GLU A:6 , HOH A:216 , HOH A:253	BINDING SITE FOR RESIDUE SO4 A 204
20	CC2	SOFTWARE	GLU E:97 , THR E:100 , GLU E:133 , VAL F:3 , ARG F:66 , GOL F:203	BINDING SITE FOR RESIDUE SO4 E 201
21	CC3	SOFTWARE	ASN F:83 , GLY F:84 , ILE F:85 , LYS F:86 , ASN G:147	BINDING SITE FOR RESIDUE SO4 F 201
22	CC4	SOFTWARE	HIS E:43 , LYS E:46	BINDING SITE FOR RESIDUE SO4 E 202
23	CC5	SOFTWARE	HIS B:43 , LYS B:47 , HOH B:266	BINDING SITE FOR RESIDUE GOL B 204
24	CC6	SOFTWARE	ILE F:4 , SER F:5 , VAL F:8 , GLU F:113 , ASP F:115 , GOL F:203	BINDING SITE FOR RESIDUE GOL F 202
25	CC7	SOFTWARE	ARG B:66 , GLU B:133 , HOH B:239 , HOH B:300	BINDING SITE FOR RESIDUE GOL B 205
26	CC8	SOFTWARE	GLY G:84 , ILE G:85 , LYS G:86 , ASP G:87	BINDING SITE FOR RESIDUE GOL G 201
27	CC9	SOFTWARE	ARG H:18	BINDING SITE FOR RESIDUE GOL H 202
28	DC1	SOFTWARE	SER C:5 , GLU C:6 , LYS C:7 , HOH C:262	BINDING SITE FOR RESIDUE GOL C 202
29	DC2	SOFTWARE	TYR E:104 , SO4 E:201 , VAL F:3 , ILE F:4 , ARG F:66 , ASP F:115 , GOL F:202	BINDING SITE FOR RESIDUE GOL F 203
30	DC3	SOFTWARE	ARG E:18 , PHE E:98 , HOH E:280 , HOH E:289	BINDING SITE FOR RESIDUE GOL E 203
31	DC4	SOFTWARE	GLY E:40 , ASP E:157 , ARG E:158 , GLY E:161 , HOH E:322	BINDING SITE FOR RESIDUE GOL E 204

(no "SS Bond" information available for 1VLG)

(no "Cis Peptide Bond" information available for 1VLG)

(no "SAP(SNP)/Variant" information available for 1VLG)

(no "PROSITE Motif" information available for 1VLG)

(no "Exon" information available for 1VLG)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:164
 aligned with Q9X0L2_THEMA | Q9X0L2 from UniProtKB/TrEMBL  Length:164

    Alignment length:164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
         Q9X0L2_THEMA     1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
               SCOP domains d1vlga_ A: Non-hem ferritin                                                                                                                                          SCOP domains
               CATH domains 1vlgA00 A:1-164  [code=1.20.1260.10, no name defined]                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vlg A   1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain B from PDB  Type:PROTEIN  Length:164
 aligned with Q9X0L2_THEMA | Q9X0L2 from UniProtKB/TrEMBL  Length:164

    Alignment length:164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
         Q9X0L2_THEMA     1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
               SCOP domains d1vlgb_ B: Non-hem ferritin                                                                                                                                          SCOP domains
               CATH domains 1vlgB00 B:1-164  [code=1.20.1260.10, no name defined]                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vlg B   1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain C from PDB  Type:PROTEIN  Length:164
 aligned with Q9X0L2_THEMA | Q9X0L2 from UniProtKB/TrEMBL  Length:164

    Alignment length:164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
         Q9X0L2_THEMA     1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
               SCOP domains d1vlgc_ C: Non-hem ferritin                                                                                                                                          SCOP domains
               CATH domains 1vlgC00 C:1-164  [code=1.20.1260.10, no name defined]                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vlg C   1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain D from PDB  Type:PROTEIN  Length:164
 aligned with Q9X0L2_THEMA | Q9X0L2 from UniProtKB/TrEMBL  Length:164

    Alignment length:164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
         Q9X0L2_THEMA     1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
               SCOP domains d1vlgd_ D: Non-hem ferritin                                                                                                                                          SCOP domains
               CATH domains 1vlgD00 D:1-164  [code=1.20.1260.10, no name defined]                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vlg D   1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain E from PDB  Type:PROTEIN  Length:164
 aligned with Q9X0L2_THEMA | Q9X0L2 from UniProtKB/TrEMBL  Length:164

    Alignment length:164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
         Q9X0L2_THEMA     1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
               SCOP domains d1vlge_ E: Non-hem ferritin                                                                                                                                          SCOP domains
               CATH domains 1vlgE00 E:1-164  [code=1.20.1260.10, no name defined]                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vlg E   1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain F from PDB  Type:PROTEIN  Length:164
 aligned with Q9X0L2_THEMA | Q9X0L2 from UniProtKB/TrEMBL  Length:164

    Alignment length:164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
         Q9X0L2_THEMA     1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
               SCOP domains d1vlgf_ F: Non-hem ferritin                                                                                                                                          SCOP domains
               CATH domains 1vlgF00 F:1-164  [code=1.20.1260.10, no name defined]                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vlg F   1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain G from PDB  Type:PROTEIN  Length:164
 aligned with Q9X0L2_THEMA | Q9X0L2 from UniProtKB/TrEMBL  Length:164

    Alignment length:164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
         Q9X0L2_THEMA     1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
               SCOP domains d1vlgg_ G: Non-hem ferritin                                                                                                                                          SCOP domains
               CATH domains 1vlgG00 G:1-164  [code=1.20.1260.10, no name defined]                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vlg G   1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain H from PDB  Type:PROTEIN  Length:164
 aligned with Q9X0L2_THEMA | Q9X0L2 from UniProtKB/TrEMBL  Length:164

    Alignment length:164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
         Q9X0L2_THEMA     1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
               SCOP domains d1vlgh_ H: Non-hem ferritin                                                                                                                                          SCOP domains
               CATH domains 1vlgH00 H:1-164  [code=1.20.1260.10, no name defined]                                                                                                                CATH domains
           Pfam domains (1) --------Ferritin-1vlgH01 H:9-146                                                                                                                  ------------------ Pfam domains (1)
           Pfam domains (2) --------Ferritin-1vlgH02 H:9-146                                                                                                                  ------------------ Pfam domains (2)
           Pfam domains (3) --------Ferritin-1vlgH03 H:9-146                                                                                                                  ------------------ Pfam domains (3)
           Pfam domains (4) --------Ferritin-1vlgH04 H:9-146                                                                                                                  ------------------ Pfam domains (4)
           Pfam domains (5) --------Ferritin-1vlgH05 H:9-146                                                                                                                  ------------------ Pfam domains (5)
           Pfam domains (6) --------Ferritin-1vlgH06 H:9-146                                                                                                                  ------------------ Pfam domains (6)
           Pfam domains (7) --------Ferritin-1vlgH07 H:9-146                                                                                                                  ------------------ Pfam domains (7)
           Pfam domains (8) --------Ferritin-1vlgH08 H:9-146                                                                                                                  ------------------ Pfam domains (8)
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vlg H   1 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQRE 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Ferritin-like (533)

Superfamily: Ferritin-like (489)

Family: Ferritin (232)

Protein domain: Non-hem ferritin (13)

Thermotoga maritima [TaxId: 2336] (1)

1a	d1vlga_	A:
1b	d1vlgb_	B:
1c	d1vlgc_	C:
1d	d1vlgd_	D:
1e	d1vlge_	E:
1f	d1vlgf_	F:
1g	d1vlgg_	G:
1h	d1vlgh_	H:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Ferritin; (180)

Homologous Superfamily: [code=1.20.1260.10, no name defined] (180)

Thermotoga maritima msb8. Organism_taxid: 243274. Strain: msb8. (1)

1a	1vlgA00	A:1-164
1b	1vlgB00	B:1-164
1c	1vlgC00	C:1-164
1d	1vlgD00	D:1-164
1e	1vlgE00	E:1-164
1f	1vlgF00	F:1-164
1g	1vlgG00	G:1-164
1h	1vlgH00	H:1-164

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Ferritin (185)

Family: Ferritin (83)

Thermotoga maritima (2)

1a	Ferritin-1vlgH01	H:9-146
1b	Ferritin-1vlgH02	H:9-146
1c	Ferritin-1vlgH03	H:9-146
1d	Ferritin-1vlgH04	H:9-146
1e	Ferritin-1vlgH05	H:9-146
1f	Ferritin-1vlgH06	H:9-146
1g	Ferritin-1vlgH07	H:9-146
1h	Ferritin-1vlgH08	H:9-146

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (Q9X0L2_THEMA | Q9X0L2)

molecular function
	GO:0008199	ferric iron binding	Interacting selectively and non-covalently with ferric iron, Fe(III).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0006879	cellular iron ion homeostasis	Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
	GO:0006826	iron ion transport	The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
	Complete Structure
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	Cis Peptide Bonds
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	1vlg
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	Q9X0L2_THEMA \| Q9X0L2
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	Q9X0L2_THEMA \| Q9X0L2	:	1z4a

(no "Related Entries Specified in the PDB File" available for 1VLG)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 31)

Sites (31, 31)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 8)

CATH Domains (1, 8)

Pfam Domains (1, 8)

Gene Ontology (5, 5)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File