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1VLG
Biol. Unit 1
Info
Asym.Unit (245 KB)
Biol.Unit 1 (699 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FERRITIN (TM1128) FROM THERMOTOGA MARITIMA AT 2.00 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
23 Jul 04 (Deposition) - 17 Aug 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (3x)
Keywords
:
Tm1128, Ferritin, Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Joint Center For Structural Genomics, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Ferritin (Tm1128) From Thermotoga Maritima At 2. 00 A Resolution
To Be Published
[
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Hetero Components
(2, 69)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
1e: FE (III) ION (FEe)
1f: FE (III) ION (FEf)
1g: FE (III) ION (FEg)
1h: FE (III) ION (FEh)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
-1
Ligand/Ion
FE (III) ION
2
GOL
27
Ligand/Ion
GLYCEROL
3
SO4
42
Ligand/Ion
SULFATE ION
[
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Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:19 , GLU A:52 , HIS A:55 , HOH A:254 , HOH A:282 , HOH A:283
BINDING SITE FOR RESIDUE FE A 200
02
AC2
SOFTWARE
GLU B:19 , GLU B:52 , HIS B:55 , HOH B:286 , HOH B:308 , HOH B:309
BINDING SITE FOR RESIDUE FE B 200
03
AC3
SOFTWARE
GLU C:19 , GLU C:52 , HIS C:55 , HOH C:263 , HOH C:264 , HOH C:270
BINDING SITE FOR RESIDUE FE C 200
04
AC4
SOFTWARE
GLU D:19 , GLU D:52 , HIS D:55 , HOH D:247 , HOH D:260 , HOH D:262
BINDING SITE FOR RESIDUE FE D 200
05
AC5
SOFTWARE
GLU E:19 , GLU E:52 , HIS E:55 , HOH E:297 , HOH E:320
BINDING SITE FOR RESIDUE FE E 200
06
AC6
SOFTWARE
GLU F:19 , GLU F:52 , HIS F:55 , HOH F:220 , HOH F:241 , HOH F:259
BINDING SITE FOR RESIDUE FE F 200
07
AC7
SOFTWARE
GLU G:19 , GLU G:52 , HIS G:55 , HOH G:238
BINDING SITE FOR RESIDUE FE G 200
08
AC8
SOFTWARE
GLU H:19 , GLU H:52 , HIS H:55 , HOH H:237 , HOH H:238
BINDING SITE FOR RESIDUE FE H 200
09
AC9
SOFTWARE
GLU A:97 , THR A:100 , GLU A:133 , ARG C:66
BINDING SITE FOR RESIDUE SO4 A 201
10
BC1
SOFTWARE
ASN A:147 , GLN A:149 , SER A:151 , GLN B:149 , SER B:151 , SER D:151 , GLN E:149 , SER E:151 , HOH E:252
BINDING SITE FOR RESIDUE SO4 A 202
11
BC2
SOFTWARE
SER B:5 , GLU B:6 , HOH B:208 , HOH B:314
BINDING SITE FOR RESIDUE SO4 B 201
12
BC3
SOFTWARE
ARG B:18 , PHE B:98 , HOH B:293
BINDING SITE FOR RESIDUE SO4 B 202
13
BC4
SOFTWARE
GLY B:84 , ILE B:85 , LYS B:86 , HOH B:215
BINDING SITE FOR RESIDUE SO4 B 203
14
BC5
SOFTWARE
ARG C:18 , PHE C:98
BINDING SITE FOR RESIDUE SO4 C 201
15
BC6
SOFTWARE
GLY D:84 , ILE D:85 , LYS D:86 , HOH D:243
BINDING SITE FOR RESIDUE SO4 D 201
16
BC7
SOFTWARE
GLU D:97 , THR D:100 , GLU D:133 , VAL E:3 , ARG E:66 , HOH E:321
BINDING SITE FOR RESIDUE SO4 D 202
17
BC8
SOFTWARE
VAL H:3 , ARG H:66 , GLU H:97 , THR H:100 , GLU H:133
BINDING SITE FOR RESIDUE SO4 H 201
18
BC9
SOFTWARE
ARG A:18 , PHE A:98
BINDING SITE FOR RESIDUE SO4 A 203
19
CC1
SOFTWARE
SER A:5 , GLU A:6 , HOH A:216 , HOH A:253
BINDING SITE FOR RESIDUE SO4 A 204
20
CC2
SOFTWARE
GLU E:97 , THR E:100 , GLU E:133 , VAL F:3 , ARG F:66 , GOL F:203
BINDING SITE FOR RESIDUE SO4 E 201
21
CC3
SOFTWARE
ASN F:83 , GLY F:84 , ILE F:85 , LYS F:86 , ASN G:147
BINDING SITE FOR RESIDUE SO4 F 201
22
CC4
SOFTWARE
HIS E:43 , LYS E:46
BINDING SITE FOR RESIDUE SO4 E 202
23
CC5
SOFTWARE
HIS B:43 , LYS B:47 , HOH B:266
BINDING SITE FOR RESIDUE GOL B 204
24
CC6
SOFTWARE
ILE F:4 , SER F:5 , VAL F:8 , GLU F:113 , ASP F:115 , GOL F:203
BINDING SITE FOR RESIDUE GOL F 202
25
CC7
SOFTWARE
ARG B:66 , GLU B:133 , HOH B:239 , HOH B:300
BINDING SITE FOR RESIDUE GOL B 205
26
CC8
SOFTWARE
GLY G:84 , ILE G:85 , LYS G:86 , ASP G:87
BINDING SITE FOR RESIDUE GOL G 201
27
CC9
SOFTWARE
ARG H:18
BINDING SITE FOR RESIDUE GOL H 202
28
DC1
SOFTWARE
SER C:5 , GLU C:6 , LYS C:7 , HOH C:262
BINDING SITE FOR RESIDUE GOL C 202
29
DC2
SOFTWARE
TYR E:104 , SO4 E:201 , VAL F:3 , ILE F:4 , ARG F:66 , ASP F:115 , GOL F:202
BINDING SITE FOR RESIDUE GOL F 203
30
DC3
SOFTWARE
ARG E:18 , PHE E:98 , HOH E:280 , HOH E:289
BINDING SITE FOR RESIDUE GOL E 203
31
DC4
SOFTWARE
GLY E:40 , ASP E:157 , ARG E:158 , GLY E:161 , HOH E:322
BINDING SITE FOR RESIDUE GOL E 204
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1vlga_ (A:)
1b: SCOP_d1vlgb_ (B:)
1c: SCOP_d1vlgc_ (C:)
1d: SCOP_d1vlgd_ (D:)
1e: SCOP_d1vlge_ (E:)
1f: SCOP_d1vlgf_ (F:)
1g: SCOP_d1vlgg_ (G:)
1h: SCOP_d1vlgh_ (H:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
Non-hem ferritin
(13)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1vlga_
A:
1b
d1vlgb_
B:
1c
d1vlgc_
C:
1d
d1vlgd_
D:
1e
d1vlge_
E:
1f
d1vlgf_
F:
1g
d1vlgg_
G:
1h
d1vlgh_
H:
[
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]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1vlgA00 (A:1-164)
1b: CATH_1vlgB00 (B:1-164)
1c: CATH_1vlgC00 (C:1-164)
1d: CATH_1vlgD00 (D:1-164)
1e: CATH_1vlgE00 (E:1-164)
1f: CATH_1vlgF00 (F:1-164)
1g: CATH_1vlgG00 (G:1-164)
1h: CATH_1vlgH00 (H:1-164)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Thermotoga maritima msb8. Organism_taxid: 243274. Strain: msb8.
(1)
1a
1vlgA00
A:1-164
1b
1vlgB00
B:1-164
1c
1vlgC00
C:1-164
1d
1vlgD00
D:1-164
1e
1vlgE00
E:1-164
1f
1vlgF00
F:1-164
1g
1vlgG00
G:1-164
1h
1vlgH00
H:1-164
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Ferritin_1vlgH01 (H:9-146)
1b: PFAM_Ferritin_1vlgH02 (H:9-146)
1c: PFAM_Ferritin_1vlgH03 (H:9-146)
1d: PFAM_Ferritin_1vlgH04 (H:9-146)
1e: PFAM_Ferritin_1vlgH05 (H:9-146)
1f: PFAM_Ferritin_1vlgH06 (H:9-146)
1g: PFAM_Ferritin_1vlgH07 (H:9-146)
1h: PFAM_Ferritin_1vlgH08 (H:9-146)
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Clans
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Organisms
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(
)
Clan
:
Ferritin
(185)
Family
:
Ferritin
(83)
Thermotoga maritima
(2)
1a
Ferritin-1vlgH01
H:9-146
1b
Ferritin-1vlgH02
H:9-146
1c
Ferritin-1vlgH03
H:9-146
1d
Ferritin-1vlgH04
H:9-146
1e
Ferritin-1vlgH05
H:9-146
1f
Ferritin-1vlgH06
H:9-146
1g
Ferritin-1vlgH07
H:9-146
1h
Ferritin-1vlgH08
H:9-146
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