Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit - manually
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit - manually
Asym./Biol. Unit - manually  (Jmol Viewer)
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF TT0130 PROTEIN FROM THERMUS THERMOPHILUS HB8
 
Authors :  N. K. Lokanath, N. Kunishima, Riken Structural Genomics/Proteomic Initiative (Rsgi)
Date :  29 Jan 04  (Deposition) - 29 Mar 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Pyrimidine Salvage, Oligomerization, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. K. Lokanath, N. Kunishima
Crystal Structure Of Uracil Phosphoribosyltransferase From Thermus Thermophilus Hb8
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - URACIL PHOSPHORIBOSYLTRANSFERASE
    Chains: A, B, C, D
    EC Number: 2.4.2.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 51)

Asymmetric/Biological Unit (2, 51)
No.NameCountTypeFull Name
1MSE28Mod. Amino AcidSELENOMETHIONINE
2SO423Ligand/IonSULFATE ION

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY C:24 , PRO C:25 , LYS C:26 , HIS D:93 , ARG D:95 , HOH D:536BINDING SITE FOR RESIDUE SO4 D 509
02AC2SOFTWARELYS D:69 , LYS D:70 , ARG D:95 , ARG D:124BINDING SITE FOR RESIDUE SO4 D 510
03AC3SOFTWAREGLY A:24 , PRO A:25 , LYS A:26 , HIS B:93 , ARG B:95 , HOH B:543BINDING SITE FOR RESIDUE SO4 B 511
04AC4SOFTWARELYS B:69 , LYS B:70 , ARG B:95 , ARG B:124BINDING SITE FOR RESIDUE SO4 B 512
05AC5SOFTWARELYS A:69 , LYS A:70 , ARG A:95 , ARG A:124 , SO4 A:521 , HOH A:557BINDING SITE FOR RESIDUE SO4 A 513
06AC6SOFTWAREARG A:78 , ALA A:79 , GLY A:201BINDING SITE FOR RESIDUE SO4 A 514
07AC7SOFTWARELYS A:70 , HIS A:93 , ARG A:95 , HOH A:545 , GLY B:24 , PRO B:25 , LYS B:26BINDING SITE FOR RESIDUE SO4 A 515
08AC8SOFTWARETYR A:114 , ARG B:78 , TYR B:102 , HOH B:533 , HOH B:609 , HOH B:610BINDING SITE FOR RESIDUE SO4 B 516
09AC9SOFTWAREMSE A:132 , ALA A:134 , THR A:135 , GLY A:136 , GLY A:137 , SER A:138 , ALA A:139BINDING SITE FOR RESIDUE SO4 A 517
10BC1SOFTWARELYS A:147 , HIS A:173 , PRO A:174 , ASP A:175 , THR A:176 , HOH A:571BINDING SITE FOR RESIDUE SO4 A 518
11BC2SOFTWARELYS B:147 , ASP B:172 , HIS B:173 , PRO B:174 , ASP B:175 , HOH B:568 , HOH B:619BINDING SITE FOR RESIDUE SO4 B 519
12BC3SOFTWAREARG B:186 , ASN B:188 , ASP B:189BINDING SITE FOR RESIDUE SO4 B 520
13BC4SOFTWAREARG A:95 , PRO A:119 , SO4 A:513 , GLY B:206BINDING SITE FOR RESIDUE SO4 A 521
14BC5SOFTWARELYS C:69 , LYS C:70 , ARG C:95 , ARG C:124 , HOH C:610BINDING SITE FOR RESIDUE SO4 C 522
15BC6SOFTWAREHIS C:93 , ARG C:95 , HOH C:554 , GLY D:24 , PRO D:25 , LYS D:26BINDING SITE FOR RESIDUE SO4 C 523
16BC7SOFTWAREARG C:78 , LEU C:101 , HOH C:558 , HOH C:604 , HOH C:606 , TYR D:114BINDING SITE FOR RESIDUE SO4 C 524
17BC8SOFTWARELYS C:147 , HIS C:173 , PRO C:174 , ASP C:175 , THR C:176 , HOH C:631BINDING SITE FOR RESIDUE SO4 C 525
18BC9SOFTWAREARG A:62 , ARG C:186 , ASN C:188 , ASP C:189BINDING SITE FOR RESIDUE SO4 C 526
19CC1SOFTWARETYR C:114 , ARG D:78 , ALA D:79 , GLY D:201 , HOH D:602BINDING SITE FOR RESIDUE SO4 D 527
20CC2SOFTWAREMSE D:132 , ALA D:134 , THR D:135 , GLY D:136 , GLY D:137 , SER D:138BINDING SITE FOR RESIDUE SO4 D 528
21CC3SOFTWAREARG B:62 , ARG D:186 , ASN D:188 , ASP D:189BINDING SITE FOR RESIDUE SO4 D 529
22CC4SOFTWARELYS A:89 , LYS C:89 , LYS D:89BINDING SITE FOR RESIDUE SO4 A 530
23CC5SOFTWARELYS D:147 , ASP D:172 , HIS D:173 , PRO D:174 , ASP D:175BINDING SITE FOR RESIDUE SO4 D 531

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1V9S)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Leu A:77 -Arg A:78
2Val A:194 -Pro A:195
3Leu B:77 -Arg B:78
4Val B:194 -Pro B:195
5Leu C:77 -Arg C:78
6Val C:194 -Pro C:195
7Leu D:77 -Arg D:78
8Val D:194 -Pro D:195

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1V9S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1V9S)

(-) Exons   (0, 0)

(no "Exon" information available for 1V9S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:199
 aligned with UPP_THET2 | Q72J35 from UniProtKB/Swiss-Prot  Length:208

    Alignment length:208
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200        
            UPP_THET2     1 MRITLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPARVKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAERRAFLLDPMLATGGSASLALSLLKERGATGVKLMAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208
               SCOP domains d1v9sa1 A:1-208 Uracil PRTase, Upp                                                                                                                                                                               SCOP domains
               CATH domains -1v9sA00 A:2-208  [code=3.40.50.2020, no name defined]                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh....eeeeeee....eeeeeee.....eeeee..hhhhhhhhhhh.....eeeeee..---------..eee...hhhhh.eeee..ee..hhhhhhhhhhhhhh.....eeeeeeehhhhhhhhhhhh...eeeeeee..ee.....ee....hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v9s A   1 mRITLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAmLmAYEAmRDLELEETTVETPIAPARVKVLSGKKLALVAILRAGLVmVEGILKLVPHARVGHIGLY---------QYYIKLPPDIAERRAFLLDPmLATGGSASLALSLLKERGATGVKLmAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208
                            |       10        20        30      | 40   |    50        60        70        80  |     90       100 |       - |     120       130 |     140       150      |160       170       180       190       200        
                            |                                  37-MSE  |                                     83-MSE            102       112                 132-MSE                  157-MSE                                               
                            1-MSE                                39-MSE|                                                                                                                                                                    
                                                                      44-MSE                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:208
 aligned with UPP_THET2 | Q72J35 from UniProtKB/Swiss-Prot  Length:208

    Alignment length:208
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200        
            UPP_THET2     1 MRITLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPARVKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAERRAFLLDPMLATGGSASLALSLLKERGATGVKLMAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208
               SCOP domains d1v9sb_ B: automated matches                                                                                                                                                                                     SCOP domains
               CATH domains -1v9sB00 B:2-208  [code=3.40.50.2020, no name defined]                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh....eeeeeee....eeeeeee.....eeeeee.hhhhhhhhhhh.....eeeeeeeee......eeeeeee...hhhhh.eeee..ee..hhhhhhhhhhhhh......eeeeeeehhhhhhhhhhhh...eeeeeee..ee.....ee....hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v9s B   1 mRITLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAmLmAYEAmRDLELEETTVETPIAPARVKVLSGKKLALVAILRAGLVmVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAERRAFLLDPmLATGGSASLALSLLKERGATGVKLmAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208
                            |       10        20        30      | 40   |    50        60        70        80  |     90       100       110       120       130 |     140       150      |160       170       180       190       200        
                            1-MSE                              37-MSE  |                                     83-MSE                                          132-MSE                  157-MSE                                               
                                                                 39-MSE|                                                                                                                                                                    
                                                                      44-MSE                                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:208
 aligned with UPP_THET2 | Q72J35 from UniProtKB/Swiss-Prot  Length:208

    Alignment length:208
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200        
            UPP_THET2     1 MRITLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPARVKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAERRAFLLDPMLATGGSASLALSLLKERGATGVKLMAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208
               SCOP domains d1v9sc_ C: automated matches                                                                                                                                                                                     SCOP domains
               CATH domains -1v9sC00 C:2-208  [code=3.40.50.2020, no name defined]                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh....eeeeeee....eeeeeee.....eeeeee.hhhhhhhhhhh.....eeeeeeeee......eeeeeee...hhhhh.eeee..ee..hhhhhhhhhhhhhh.....eeeeeeehhhhhhhhhhhh...eeeeeee..ee.....ee....hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v9s C   1 mRITLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAmLmAYEAmRDLELEETTVETPIAPARVKVLSGKKLALVAILRAGLVmVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAERRAFLLDPmLATGGSASLALSLLKERGATGVKLmAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208
                            |       10        20        30      | 40   |    50        60        70        80  |     90       100       110       120       130 |     140       150      |160       170       180       190       200        
                            1-MSE                              37-MSE  |                                     83-MSE                                          132-MSE                  157-MSE                                               
                                                                 39-MSE|                                                                                                                                                                    
                                                                      44-MSE                                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:197
 aligned with UPP_THET2 | Q72J35 from UniProtKB/Swiss-Prot  Length:208

    Alignment length:208
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200        
            UPP_THET2     1 MRITLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPARVKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAERRAFLLDPMLATGGSASLALSLLKERGATGVKLMAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208
               SCOP domains d1v9sd_ D: automated matches                                                                                                                                                                                     SCOP domains
               CATH domains -1v9sD00 D:2-208  [code=3.40.50.2020, no name defined]                                                                                                                                                           CATH domains
           Pfam domains (1) ------------------------------------------------------------Pribosyltran-1v9sD01 D:61-161                                                                        ----------------------------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------Pribosyltran-1v9sD02 D:61-161                                                                        ----------------------------------------------- Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------Pribosyltran-1v9sD03 D:61-161                                                                        ----------------------------------------------- Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------Pribosyltran-1v9sD04 D:61-161                                                                        ----------------------------------------------- Pfam domains (4)
         Sec.struct. author .eeee..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh....eeeeeee....eeeeeee.....eeeee..hhhhhhhhhhh.....eeeeee.-----------.eee...hhhhh.eeee..ee..hhhhhhhhhhhhhh.....eeeeeeehhhhhhhhhhhh...eeeeeee..ee.....ee....hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v9s D   1 mRITLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAmLmAYEAmRDLELEETTVETPIAPARVKVLSGKKLALVAILRAGLVmVEGILKLVPHARVGHIGL-----------YYIKLPPDIAERRAFLLDPmLATGGSASLALSLLKERGATGVKLmAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208
                            |       10        20        30      | 40   |    50        60        70        80  |     90       100|        -  |    120       130 |     140       150      |160       170       180       190       200        
                            1-MSE                              37-MSE  |                                     83-MSE           101         113                132-MSE                  157-MSE                                               
                                                                 39-MSE|                                                                                                                                                                    
                                                                      44-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: PRTase-like (59)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (UPP_THET2 | Q72J35)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
    GO:0004845    uracil phosphoribosyltransferase activity    Catalysis of the reaction: diphosphate + UMP = 5-phospho-alpha-D-ribose 1-diphosphate + uracil.
biological process
    GO:0044206    UMP salvage    Any process which produces UMP, uridine monophosphate, from derivatives of it (e.g. cytidine, uridine, cytosine) without de novo synthesis.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0008655    pyrimidine-containing compound salvage    Any process that generates a pyrimidine-containing compound, any nucleobase, nucleoside, nucleotide or nucleic acid that contains a pyrimidine base, from derivatives of them without de novo synthesis.
    GO:0006223    uracil salvage    Any process that generates uracil, 2,4-dioxopyrimidine, from derivatives of it without de novo synthesis.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Leu A:77 - Arg A:78   [ RasMol ]  
    Leu B:77 - Arg B:78   [ RasMol ]  
    Leu C:77 - Arg C:78   [ RasMol ]  
    Leu D:77 - Arg D:78   [ RasMol ]  
    Val A:194 - Pro A:195   [ RasMol ]  
    Val B:194 - Pro B:195   [ RasMol ]  
    Val C:194 - Pro C:195   [ RasMol ]  
    Val D:194 - Pro D:195   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1v9s
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  UPP_THET2 | Q72J35
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.4.2.9
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  UPP_THET2 | Q72J35
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1V9S)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1V9S)