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1V9S
Asym. Unit
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Asym.Unit (144 KB)
Biol.Unit 1 (137 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TT0130 PROTEIN FROM THERMUS THERMOPHILUS HB8
Authors
:
N. K. Lokanath, N. Kunishima, Riken Structural Genomics/Proteomic Initiative (Rsgi)
Date
:
29 Jan 04 (Deposition) - 29 Mar 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Pyrimidine Salvage, Oligomerization, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. K. Lokanath, N. Kunishima
Crystal Structure Of Uracil Phosphoribosyltransferase From Thermus Thermophilus Hb8
To Be Published
[
close entry info
]
Hetero Components
(2, 51)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
28
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
23
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY C:24 , PRO C:25 , LYS C:26 , HIS D:93 , ARG D:95 , HOH D:536
BINDING SITE FOR RESIDUE SO4 D 509
02
AC2
SOFTWARE
LYS D:69 , LYS D:70 , ARG D:95 , ARG D:124
BINDING SITE FOR RESIDUE SO4 D 510
03
AC3
SOFTWARE
GLY A:24 , PRO A:25 , LYS A:26 , HIS B:93 , ARG B:95 , HOH B:543
BINDING SITE FOR RESIDUE SO4 B 511
04
AC4
SOFTWARE
LYS B:69 , LYS B:70 , ARG B:95 , ARG B:124
BINDING SITE FOR RESIDUE SO4 B 512
05
AC5
SOFTWARE
LYS A:69 , LYS A:70 , ARG A:95 , ARG A:124 , SO4 A:521 , HOH A:557
BINDING SITE FOR RESIDUE SO4 A 513
06
AC6
SOFTWARE
ARG A:78 , ALA A:79 , GLY A:201
BINDING SITE FOR RESIDUE SO4 A 514
07
AC7
SOFTWARE
LYS A:70 , HIS A:93 , ARG A:95 , HOH A:545 , GLY B:24 , PRO B:25 , LYS B:26
BINDING SITE FOR RESIDUE SO4 A 515
08
AC8
SOFTWARE
TYR A:114 , ARG B:78 , TYR B:102 , HOH B:533 , HOH B:609 , HOH B:610
BINDING SITE FOR RESIDUE SO4 B 516
09
AC9
SOFTWARE
MSE A:132 , ALA A:134 , THR A:135 , GLY A:136 , GLY A:137 , SER A:138 , ALA A:139
BINDING SITE FOR RESIDUE SO4 A 517
10
BC1
SOFTWARE
LYS A:147 , HIS A:173 , PRO A:174 , ASP A:175 , THR A:176 , HOH A:571
BINDING SITE FOR RESIDUE SO4 A 518
11
BC2
SOFTWARE
LYS B:147 , ASP B:172 , HIS B:173 , PRO B:174 , ASP B:175 , HOH B:568 , HOH B:619
BINDING SITE FOR RESIDUE SO4 B 519
12
BC3
SOFTWARE
ARG B:186 , ASN B:188 , ASP B:189
BINDING SITE FOR RESIDUE SO4 B 520
13
BC4
SOFTWARE
ARG A:95 , PRO A:119 , SO4 A:513 , GLY B:206
BINDING SITE FOR RESIDUE SO4 A 521
14
BC5
SOFTWARE
LYS C:69 , LYS C:70 , ARG C:95 , ARG C:124 , HOH C:610
BINDING SITE FOR RESIDUE SO4 C 522
15
BC6
SOFTWARE
HIS C:93 , ARG C:95 , HOH C:554 , GLY D:24 , PRO D:25 , LYS D:26
BINDING SITE FOR RESIDUE SO4 C 523
16
BC7
SOFTWARE
ARG C:78 , LEU C:101 , HOH C:558 , HOH C:604 , HOH C:606 , TYR D:114
BINDING SITE FOR RESIDUE SO4 C 524
17
BC8
SOFTWARE
LYS C:147 , HIS C:173 , PRO C:174 , ASP C:175 , THR C:176 , HOH C:631
BINDING SITE FOR RESIDUE SO4 C 525
18
BC9
SOFTWARE
ARG A:62 , ARG C:186 , ASN C:188 , ASP C:189
BINDING SITE FOR RESIDUE SO4 C 526
19
CC1
SOFTWARE
TYR C:114 , ARG D:78 , ALA D:79 , GLY D:201 , HOH D:602
BINDING SITE FOR RESIDUE SO4 D 527
20
CC2
SOFTWARE
MSE D:132 , ALA D:134 , THR D:135 , GLY D:136 , GLY D:137 , SER D:138
BINDING SITE FOR RESIDUE SO4 D 528
21
CC3
SOFTWARE
ARG B:62 , ARG D:186 , ASN D:188 , ASP D:189
BINDING SITE FOR RESIDUE SO4 D 529
22
CC4
SOFTWARE
LYS A:89 , LYS C:89 , LYS D:89
BINDING SITE FOR RESIDUE SO4 A 530
23
CC5
SOFTWARE
LYS D:147 , ASP D:172 , HIS D:173 , PRO D:174 , ASP D:175
BINDING SITE FOR RESIDUE SO4 D 531
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1v9sb_ (B:)
1b: SCOP_d1v9sc_ (C:)
1c: SCOP_d1v9sd_ (D:)
2a: SCOP_d1v9sa1 (A:1-208)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PRTase-like
(145)
Superfamily
:
PRTase-like
(145)
Family
:
Phosphoribosyltransferases (PRTases)
(100)
Protein domain
:
automated matches
(7)
Thermus thermophilus HB8 [TaxId: 300852]
(1)
1a
d1v9sb_
B:
1b
d1v9sc_
C:
1c
d1v9sd_
D:
Protein domain
:
Uracil PRTase, Upp
(14)
Thermus thermophilus [TaxId: 274]
(1)
2a
d1v9sa1
A:1-208
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1v9sD00 (D:2-208)
1b: CATH_1v9sA00 (A:2-208)
1c: CATH_1v9sB00 (B:2-208)
1d: CATH_1v9sC00 (C:2-208)
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Architectures
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2020, no name defined]
(117)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(1)
1a
1v9sD00
D:2-208
1b
1v9sA00
A:2-208
1c
1v9sB00
B:2-208
1d
1v9sC00
C:2-208
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Pribosyltran_1v9sD01 (D:61-161)
1b: PFAM_Pribosyltran_1v9sD02 (D:61-161)
1c: PFAM_Pribosyltran_1v9sD03 (D:61-161)
1d: PFAM_Pribosyltran_1v9sD04 (D:61-161)
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)
Clan
:
PRTase-like
(59)
Family
:
Pribosyltran
(59)
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
(1)
1a
Pribosyltran-1v9sD01
D:61-161
1b
Pribosyltran-1v9sD02
D:61-161
1c
Pribosyltran-1v9sD03
D:61-161
1d
Pribosyltran-1v9sD04
D:61-161
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]
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