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(-) Description

Title :  HUMAN THROMBOPOIETIN FUNCTIONAL DOMAIN COMPLEXED TO NEUTRALIZING ANTIBODY TN1 FAB
 
Authors :  M. D. Feese, T. Tamada, Y. Kato, Y. Maeda, M. Hirose, Y. Matsukura, H. Shigematsu, T. Kato, H. Miyazaki, R. Kuroki
Date :  18 Dec 03  (Deposition) - 02 Mar 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym. Unit :  H,I,J,K,L,M,N,O,V,X,Y,Z
Biol. Unit 1:  H,L,V  (1x)
Biol. Unit 2:  I,M,X  (1x)
Biol. Unit 3:  J,N,Y  (1x)
Biol. Unit 4:  K,O,Z  (1x)
Keywords :  Thrombopoietin, Fab Fragment, Complex (Cytokine/Antibody), Immune System/Cytokine Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. D. Feese, T. Tamada, Y. Kato, Y. Maeda, M. Hirose, Y. Matsukura, H. Shigematsu, T. Muto, A. Matsumoto, H. Watarai, K. Ogami, T. Tahara, T. Kato, H. Miyazaki, R. Kuroki
Structure Of The Receptor-Binding Domain Of Human Thrombopoietin Determined By Complexation With A Neutralizing Antibody Fragment
Proc. Natl. Acad. Sci. Usa V. 101 1816 2004
PubMed-ID: 14769915  |  Reference-DOI: 10.1073/PNAS.0308530100
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MONOCLONAL TN1 FAB LIGHT CHAIN
    Chains: L, M, N, O
    Engineered: YES
    Expression System: MUS MUSCULUS
    Expression System Cell Line: HYBRIDOMA
    Expression System Common: HOUSE MOUSE
    Expression System Taxid: 10090
    Fragment: FAB LIGHT CHAIN
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 2 - MONOCLONAL TN1 FAB HEAVY CHAIN
    Chains: H, I, J, K
    Engineered: YES
    Expression System: MUS MUSCULUS
    Expression System Cell Line: HYBRIDOMA
    Expression System Common: HOUSE MOUSE
    Expression System Taxid: 10090
    Fragment: FAB HEAVY CHAIN
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 3 - THROMBOPOIETIN
    Chains: V, X, Y, Z
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: TPO FUNCTIONAL DOMAIN
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MEGAKARYOCYTE COLONY STIMULATING FACTOR, MYELOPROLIFERATIVE LEUKEMIA VIRUS ONCOGENE LIGAND, C-MPL LIGAND, ML, MEGAKARYOCYTE GROWTH AND DEVELOPMENT FACTOR, MGDF

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : HIJKLMNOVXYZ
Biological Unit 1 (1x): H   L   V   
Biological Unit 2 (1x):  I   M   X  
Biological Unit 3 (1x):   J   N   Y 
Biological Unit 4 (1x):    K   O   Z

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1V7N)

(-) Sites  (0, 0)

(no "Site" information available for 1V7N)

(-) SS Bonds  (21, 21)

Asymmetric Unit
No.Residues
1H:22 -H:98
2H:143 -H:198
3I:22 -I:98
4I:143 -I:198
5J:22 -J:98
6J:143 -J:198
7K:22 -K:98
8K:143 -K:198
9L:23 -L:87
10L:133 -L:193
11M:23 -M:87
12M:133 -M:193
13N:23 -N:87
14N:133 -N:193
15O:23 -O:87
16O:133 -O:193
17V:7 -V:151
18V:29 -V:85
19X:29 -X:85
20Y:29 -Y:85
21Z:29 -Z:85

(-) Cis Peptide Bonds  (20, 20)

Asymmetric Unit
No.Residues
1Tyr L:93 -Pro L:94
2Tyr L:139 -Pro L:140
3Phe H:149 -Pro H:150
4Glu H:151 -Pro H:152
5Trp H:191 -Pro H:192
6Tyr M:93 -Pro M:94
7Tyr M:139 -Pro M:140
8Phe I:149 -Pro I:150
9Glu I:151 -Pro I:152
10Trp I:191 -Pro I:192
11Tyr N:93 -Pro N:94
12Tyr N:139 -Pro N:140
13Phe J:149 -Pro J:150
14Glu J:151 -Pro J:152
15Trp J:191 -Pro J:192
16Tyr O:93 -Pro O:94
17Tyr O:139 -Pro O:140
18Phe K:149 -Pro K:150
19Glu K:151 -Pro K:152
20Trp K:191 -Pro K:192

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 4)

Asymmetric Unit (1, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_011796G116ETPO_HUMANPolymorphism1126665V/X/Y/ZG95E
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_011796G116ETPO_HUMANPolymorphism1126665VG95E
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_011796G116ETPO_HUMANPolymorphism1126665XG95E
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_011796G116ETPO_HUMANPolymorphism1126665YG95E
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_011796G116ETPO_HUMANPolymorphism1126665ZG95E
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1V7N)

(-) Exons   (4, 16)

Asymmetric Unit (4, 16)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002046151aENSE00001288997chr3:184095932-18409586370TPO_HUMAN-00--
1.2aENST000002046152aENSE00001056827chr3:184094192-184094035158TPO_HUMAN1-550--
1.3ENST000002046153ENSE00001079331chr3:184093803-184093676128TPO_HUMAN5-47434V:7-26
X:8-26
Y:8-26
Z:9-26		20
19
19
18
1.4ENST000002046154ENSE00000781177chr3:184093389-18409330387TPO_HUMAN48-76294V:27-55
X:27-55
Y:27-55
Z:27-55		29
29
29
29
1.5aENST000002046155aENSE00000781178chr3:184091370-184091203168TPO_HUMAN77-132564V:56-111
X:56-111
Y:56-111
Z:56-111		56
56
56
56
1.6cENST000002046156cENSE00001288988chr3:184090966-1840897231244TPO_HUMAN133-3532214V:112-151
X:112-145
Y:112-146
Z:112-146		40
34
35
35

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d1v7nh1 H:1-116 Immunoglobulin heavy chain variable domain, VH                                                      d1v7nh2 H:117-217 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 1v7nH01 H:1-116 Immunoglobulins                                                                                     1v7nH02 H:117-205 Immunoglobulins                                                        ------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee.hhhhh..eee........eeeee....eeeeee...hhhhheeeeee..........eeeee........eeeee..........eeeeeeeeeee.......ee.hhh....eee...ee....eeeeeeeeee.hhh......eeeee...eee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v7n H   1 EVKLEESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAEIRSKVNNHAIHYAESVKGRFTVSRDDSKSSVYLQMNSLRAEDTGIYYCSGWSFLYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       


Chain I from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d1v7ni1 I:1-116 Immunoglobulin heavy chain variable domain, VH                                                      d1v7ni2 I:117-217 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 1v7nI01 I:1-116 Immunoglobulins                                                                                     1v7nI02 I:117-205 Immunoglobulins                                                        ------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee.hhhhh..eee.hhhh.....eee....eeeeee...hhhhheeeee............eeee........eeeee..........eee.eeeeeee.....eeee..............ee....eeeee..eee.hhh......eeee.......ee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v7n I   1 EVKLEESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAEIRSKVNNHAIHYAESVKGRFTVSRDDSKSSVYLQMNSLRAEDTGIYYCSGWSFLYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       


Chain J from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d1v7nj1 J:1-116 Immunoglobulin heavy chain variable domain, VH                                                      d1v7nj2 J:117-217 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 1v7nJ01 J:1-116 Immunoglobulins                                                                                     1v7nJ02 J:117-205 Immunoglobulins                                                        ------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeeee...eeeeeeee........eee.hhhh....eeee....eeeeee........eeeeeee....ee...eeeee........eee............eeee..eeeee.......ee.hhh....eee...ee....eeeeeeeeee.hhh....eeeeeee...eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v7n J   1 EVKLEESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAEIRSKVNNHAIHYAESVKGRFTVSRDDSKSSVYLQMNSLRAEDTGIYYCSGWSFLYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       


Chain K from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d1v7nk1 K:1-116 Immunoglobulin heavy chain variable domain, VH                                                      d1v7nk2 K:117-217 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 1v7nK01 K:1-116 Immunoglobulins                                                                                     1v7nK02 K:117-205 Immunoglobulins                                                        ------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee....eeeeeeeee..hhhhh.eeeeee.....eeeeeee.hhhhh..eee.hhhh.....eee....eeeeeee.......eeeeeee....ee...eeeee........eeee...........eee..eeeeee.....eeee........eee...ee....eeeeeeeeee.hhh.....eeeeee...eeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v7n K   1 EVKLEESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAEIRSKVNNHAIHYAESVKGRFTVSRDDSKSSVYLQMNSLRAEDTGIYYCSGWSFLYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       


Chain L from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains d1v7nl1 L:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                 d1v7nl2 L:108-213 Immunoglobulin light chain kappa constant domain, CL-kappa                               SCOP domains
               CATH domains 1v7nL01 L:1-107 Immunoglobulins                                                                            1v7nL02 L:108-209 Immunoglobulins                                                                     ---- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...eeee.....eeeeeeeeeee..eeeeee......eeeee...ee.......eeeeeeeeeeeeee.........eeeeee............eeee.......eeeee..hhhhhhhheeeeeeeeeee......eeee.........eeeee.........eeeeeeeeeehhhhhhh.eeeeeeee..eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v7n L   1 QVVLTQSPGIMSASPGEKVTITCSASSSVSYMYWFQQKPGTSPKLWIYSTSNLASGVPARFRGSGSGTSYSLTISRMEAEDAATYYCQQRSGYPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   


Chain M from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains d1v7nm1 M:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                 d1v7nm2 M:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa                              SCOP domains
               CATH domains 1v7nM01 M:1-107 Immunoglobulins                                                                            1v7nM02 M:108-208 Immunoglobulins                                                                    ---- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...eeee.....ee..eee.......eeeee......eeeee...ee.......eeee....eeeeee...hhhhh.eeeee............eeeee.........eee..hhhhhh..eeeeeeeeeee....eeeeee....ee.....ee..........eeeeeeeeeehhhhhh..eeeeeeee..eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v7n M   1 QVVLTQSPGIMSASPGEKVTITCSASSSVSYMYWFQQKPGTSPKLWIYSTSNLASGVPARFRGSGSGTSYSLTISRMEAEDAATYYCQQRSGYPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE 212
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  


Chain N from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains d1v7nn1 N:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                 d1v7nn2 N:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa                              SCOP domains
               CATH domains 1v7nN01 N:1-107 Immunoglobulins                                                                            1v7nN02 N:108-209 Immunoglobulins                                                                     --- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...eeee.....eeeeeee.......eeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeee............eeeee.......eeeee..hhhhhh...eeeeeeeeee........ee.........eeeee.........eeeeeeeeehhhhhh.....ee................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v7n N   1 QVVLTQSPGIMSASPGEKVTITCSASSSVSYMYWFQQKPGTSPKLWIYSTSNLASGVPARFRGSGSGTSYSLTISRMEAEDAATYYCQQRSGYPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE 212
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  


Chain O from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains d1v7no1 O:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                 d1v7no2 O:108-213 Immunoglobulin light chain kappa constant domain, CL-kappa                               SCOP domains
               CATH domains 1v7nO01 O:1-107 Immunoglobulins                                                                            1v7nO02 O:108-208 Immunoglobulins                                                                    ----- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee...eeee.....ee..ee.........eeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeee..............eeeee.........eee..hhhhhhh.eeeeeeeeeee......eeee....ee...eee...........eeeeeeeeeehhhhh...eeeeee........eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1v7n O   1 QVVLTQSPGIMSASPGEKVTITCSASSSVSYMYWFQQKPGTSPKLWIYSTSNLASGVPARFRGSGSGTSYSLTISRMEAEDAATYYCQQRSGYPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   


Chain V from PDB  Type:PROTEIN  Length:145
 aligned with TPO_HUMAN | P40225 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:145
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167     
            TPO_HUMAN    28 CDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPVLLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRLLLGALQSLLGTQLPPQGRTTAHKDPNAIFLSFQHLLRGKVRFLMLVGGSTLC 172
               SCOP domains d1v7nv_ V: Thrombopoietin                                                                                                                         SCOP domains
               CATH domains 1v7nV00 V:7-151  [code=1.20.1250.10, no name defined]                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh..........eeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh........eeee.hhhhhhhhhhhhhhh.hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------E-------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.3  PDB: V:7-2Exon 1.4  PDB: V:27-55       Exon 1.5a  PDB: V:56-111 UniProt: 77-132                Exon 1.6c  PDB: V:112-151 [INCOMPLETE]   Transcript 1
                 1v7n V   7 CDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPVLLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRLLLGALQSLLGTQLPPRGRTTAHKDPNAIFLSFQHLLRGKVRFLMLVGGSTLC 151
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146     


Chain X from PDB  Type:PROTEIN  Length:138
 aligned with TPO_HUMAN | P40225 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:138
                                    38        48        58        68        78        88        98       108       118       128       138       148       158        
            TPO_HUMAN    29 DLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPVLLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRLLLGALQSLLGTQLPPQGRTTAHKDPNAIFLSFQHLLRGKVRFLMLV 166
               SCOP domains d1v7nx_ X: Thrombopoietin                                                                                                                  SCOP domains
               CATH domains 1v7nX00 X:8-145  [code=1.20.1250.10, no name defined]                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh............eeee............hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh........eeee..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------E-------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 1 Exon 1.3           Exon 1.4  PDB: X:27-55       Exon 1.5a  PDB: X:56-111 UniProt: 77-132                Exon 1.6c  PDB: X:112-145          Transcript 1
                 1v7n X   8 DLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPVLLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRLLLGALQSLLGTQLPPRGRTTAHKDPNAIFLSFQHLLRGKVRFLMLV 145
                                    17        27        37        47        57        67        77        87        97       107       117       127       137        


Chain Y from PDB  Type:PROTEIN  Length:139
 aligned with TPO_HUMAN | P40225 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:139
                                    38        48        58        68        78        88        98       108       118       128       138       148       158         
            TPO_HUMAN    29 DLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPVLLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRLLLGALQSLLGTQLPPQGRTTAHKDPNAIFLSFQHLLRGKVRFLMLVG 167
               SCOP domains d1v7ny_ Y: Thrombopoietin                                                                                                                   SCOP domains
               CATH domains 1v7nY00 Y:8-146  [code=1.20.1250.10, no name defined]                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh.........eee......hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------E--------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.3           Exon 1.4  PDB: Y:27-55       Exon 1.5a  PDB: Y:56-111 UniProt: 77-132                Exon 1.6c  PDB: Y:112-146           Transcript 1
                 1v7n Y   8 DLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPVLLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRLLLGALQSLLGTQLPPRGRTTAHKDPNAIFLSFQHLLRGKVRFLMLVG 146
                                    17        27        37        47        57        67        77        87        97       107       117       127       137         


Chain Z from PDB  Type:PROTEIN  Length:138
 aligned with TPO_HUMAN | P40225 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:138
                                    39        49        59        69        79        89        99       109       119       129       139       149       159        
            TPO_HUMAN    30 LRVLSKLLRDSHVLHSRLSQCPEVHPLPTPVLLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRLLLGALQSLLGTQLPPQGRTTAHKDPNAIFLSFQHLLRGKVRFLMLVG 167
               SCOP domains d1v7nz_ Z: Thrombopoietin                                                                                                                  SCOP domains
               CATH domains 1v7nZ00 Z:9-146  [code=1.20.1250.10, no name defined]                                                                                      CATH domains
           Pfam domains (1) EPO_TPO-1v7nZ01 Z:9-146                                                                                                                    Pfam domains (1)
           Pfam domains (2) EPO_TPO-1v7nZ02 Z:9-146                                                                                                                    Pfam domains (2)
           Pfam domains (3) EPO_TPO-1v7nZ03 Z:9-146                                                                                                                    Pfam domains (3)
           Pfam domains (4) EPO_TPO-1v7nZ04 Z:9-146                                                                                                                    Pfam domains (4)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh.........eeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh........eeee.hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------E--------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 1 Exon 1.3          Exon 1.4  PDB: Z:27-55       Exon 1.5a  PDB: Z:56-111 UniProt: 77-132                Exon 1.6c  PDB: Z:112-146           Transcript 1
                 1v7n Z   9 LRVLSKLLRDSHVLHSRLSQCPEVHPLPTPVLLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRLLLGALQSLLGTQLPPRGRTTAHKDPNAIFLSFQHLLRGKVRFLMLVG 146
                                    18        28        38        48        58        68        78        88        98       108       118       128       138
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (5, 20)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 20)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Immunoglobulin-like (3897)
(-)
Homologous Superfamily: Immunoglobulins (2282)
(-)
House mouse (Mus musculus) (616)
2a1v7nL02L:108-209
2b1v7nH02H:117-205
2c1v7nI02I:117-205
2d1v7nJ02J:117-205
2e1v7nK02K:117-205
2f1v7nH01H:1-116
2g1v7nI01I:1-116
2h1v7nJ01J:1-116
2i1v7nK01K:1-116
2j1v7nN02N:108-209
2k1v7nM02M:108-208
2l1v7nO02O:108-208
2m1v7nL01L:1-107
2n1v7nM01M:1-107
2o1v7nN01N:1-107
2p1v7nO01O:1-107

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: 4H_Cytokine (48)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)
Chain V,X,Y,Z   (TPO_HUMAN | P40225)
molecular function
    GO:0005125    cytokine activity    Functions to control the survival, growth, differentiation and effector function of tissues and cells.
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
    GO:0005179    hormone activity    The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects; all bind receptors and trigger some biological process.
biological process
    GO:0008283    cell proliferation    The multiplication or reproduction of cells, resulting in the expansion of a cell population.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0030099    myeloid cell differentiation    The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages.
    GO:0070374    positive regulation of ERK1 and ERK2 cascade    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade.
    GO:1902035    positive regulation of hematopoietic stem cell proliferation    Any process that activates or increases the frequency, rate or extent of hematopoietic stem cell proliferation.
    GO:0045654    positive regulation of megakaryocyte differentiation    Any process that activates or increases the frequency, rate or extent of megakaryocyte differentiation.
    GO:0051897    positive regulation of protein kinase B signaling    Any process that activates or increases the frequency, rate or extent of protein kinase B signaling, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B.
    GO:0001934    positive regulation of protein phosphorylation    Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein.
    GO:0038163    thrombopoietin-mediated signaling pathway    A series of molecular signals initiated by the binding of a thrombopoietin to the thrombopoietin receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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  1v7n
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TPO_HUMAN | P40225: 1v7m

(-) Related Entries Specified in the PDB File

1v7m THE SAME PROTEIN IN WILD TYPE