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1V7N
Biol. Unit 1
Info
Asym.Unit (364 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (94 KB)
Biol.Unit 3 (94 KB)
Biol.Unit 4 (93 KB)
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(1)
Title
:
HUMAN THROMBOPOIETIN FUNCTIONAL DOMAIN COMPLEXED TO NEUTRALIZING ANTIBODY TN1 FAB
Authors
:
M. D. Feese, T. Tamada, Y. Kato, Y. Maeda, M. Hirose, Y. Matsukura, H. Shigematsu, T. Kato, H. Miyazaki, R. Kuroki
Date
:
18 Dec 03 (Deposition) - 02 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : H,I,J,K,L,M,N,O,V,X,Y,Z
Biol. Unit 1: H,L,V (1x)
Biol. Unit 2: I,M,X (1x)
Biol. Unit 3: J,N,Y (1x)
Biol. Unit 4: K,O,Z (1x)
Keywords
:
Thrombopoietin, Fab Fragment, Complex (Cytokine/Antibody), Immune System/Cytokine Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
M. D. Feese, T. Tamada, Y. Kato, Y. Maeda, M. Hirose, Y. Matsukura, H. Shigematsu, T. Muto, A. Matsumoto, H. Watarai, K. Ogami, T. Tahara, T. Kato, H. Miyazaki, R. Kuroki
Structure Of The Receptor-Binding Domain Of Human Thrombopoietin Determined By Complexation With A Neutralizing Antibody Fragment
Proc. Natl. Acad. Sci. Usa V. 101 1816 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_011796 (G95E, chain V, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011796
G
116
E
TPO_HUMAN
Polymorphism
1126665
V
G
95
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(5, 20)
Info
All SCOP Domains
1a: SCOP_d1v7nv_ (V:)
1b: SCOP_d1v7nx_ (X:)
1c: SCOP_d1v7ny_ (Y:)
1d: SCOP_d1v7nz_ (Z:)
2a: SCOP_d1v7nh2 (H:117-217)
2b: SCOP_d1v7ni2 (I:117-217)
2c: SCOP_d1v7nj2 (J:117-217)
2d: SCOP_d1v7nk2 (K:117-217)
3a: SCOP_d1v7nl2 (L:108-213)
3b: SCOP_d1v7nm2 (M:108-212)
3c: SCOP_d1v7nn2 (N:108-212)
3d: SCOP_d1v7no2 (O:108-213)
4a: SCOP_d1v7nh1 (H:1-116)
4b: SCOP_d1v7ni1 (I:1-116)
4c: SCOP_d1v7nj1 (J:1-116)
4d: SCOP_d1v7nk1 (K:1-116)
5a: SCOP_d1v7nl1 (L:1-107)
5b: SCOP_d1v7nm1 (M:1-107)
5c: SCOP_d1v7nn1 (N:1-107)
5d: SCOP_d1v7no1 (O:1-107)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Short-chain cytokines
(78)
Protein domain
:
Thrombopoietin
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1v7nv_
V:
1b
d1v7nx_
X:
1c
d1v7ny_
Y:
1d
d1v7nz_
Z:
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
2a
d1v7nh2
H:117-217
2b
d1v7ni2
I:117-217
2c
d1v7nj2
J:117-217
2d
d1v7nk2
K:117-217
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
3a
d1v7nl2
L:108-213
3b
d1v7nm2
M:108-212
3c
d1v7nn2
N:108-212
3d
d1v7no2
O:108-213
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 1 [TaxId: 10090]
(57)
4a
d1v7nh1
H:1-116
4b
d1v7ni1
I:1-116
4c
d1v7nj1
J:1-116
4d
d1v7nk1
K:1-116
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(40)
5a
d1v7nl1
L:1-107
5b
d1v7nm1
M:1-107
5c
d1v7nn1
N:1-107
5d
d1v7no1
O:1-107
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CATH Domains
(2, 20)
Info
all CATH domains
1a: CATH_1v7nX00 (X:8-145)
1b: CATH_1v7nY00 (Y:8-146)
1c: CATH_1v7nV00 (V:7-151)
1d: CATH_1v7nZ00 (Z:9-146)
2a: CATH_1v7nL02 (L:108-209)
2b: CATH_1v7nH02 (H:117-205)
2c: CATH_1v7nI02 (I:117-205)
2d: CATH_1v7nJ02 (J:117-205)
2e: CATH_1v7nK02 (K:117-205)
2f: CATH_1v7nH01 (H:1-116)
2g: CATH_1v7nI01 (I:1-116)
2h: CATH_1v7nJ01 (J:1-116)
2i: CATH_1v7nK01 (K:1-116)
2j: CATH_1v7nN02 (N:108-209)
2k: CATH_1v7nM02 (M:108-208)
2l: CATH_1v7nO02 (O:108-208)
2m: CATH_1v7nL01 (L:1-107)
2n: CATH_1v7nM01 (M:1-107)
2o: CATH_1v7nN01 (N:1-107)
2p: CATH_1v7nO01 (O:1-107)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Growth Hormone; Chain: A;
(136)
Homologous Superfamily
:
[code=1.20.1250.10, no name defined]
(130)
House mouse (Mus musculus)
(6)
1a
1v7nX00
X:8-145
1b
1v7nY00
Y:8-146
1c
1v7nV00
V:7-151
1d
1v7nZ00
Z:9-146
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1v7nL02
L:108-209
2b
1v7nH02
H:117-205
2c
1v7nI02
I:117-205
2d
1v7nJ02
J:117-205
2e
1v7nK02
K:117-205
2f
1v7nH01
H:1-116
2g
1v7nI01
I:1-116
2h
1v7nJ01
J:1-116
2i
1v7nK01
K:1-116
2j
1v7nN02
N:108-209
2k
1v7nM02
M:108-208
2l
1v7nO02
O:108-208
2m
1v7nL01
L:1-107
2n
1v7nM01
M:1-107
2o
1v7nN01
N:1-107
2p
1v7nO01
O:1-107
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_EPO_TPO_1v7nZ01 (Z:9-146)
1b: PFAM_EPO_TPO_1v7nZ02 (Z:9-146)
1c: PFAM_EPO_TPO_1v7nZ03 (Z:9-146)
1d: PFAM_EPO_TPO_1v7nZ04 (Z:9-146)
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)
Clan
:
4H_Cytokine
(48)
Family
:
EPO_TPO
(1)
Homo sapiens (Human)
(1)
1a
EPO_TPO-1v7nZ01
Z:9-146
1b
EPO_TPO-1v7nZ02
Z:9-146
1c
EPO_TPO-1v7nZ03
Z:9-146
1d
EPO_TPO-1v7nZ04
Z:9-146
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Asym.Unit (364 KB)
Header - Asym.Unit
Biol.Unit 1 (94 KB)
Header - Biol.Unit 1
Biol.Unit 2 (94 KB)
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Biol.Unit 3 (94 KB)
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Biol.Unit 4 (93 KB)
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