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(-) Description

Title :  ERYTHRINA CRISTAGALLI BOUND TO N-LINKED OLIGOSACCHARIDE AND LACTOSE
 
Authors :  K. Turton, R. Natesh, N. Thiyagarajan, J. A. Chaddock, K. R. Acharya
Date :  20 Mar 04  (Deposition) - 22 Jun 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.13
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Lectin, Carbohydrate Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Turton, R. Natesh, N. Thiyagarajan, J. A. Chaddock, K. R. Acharya
Crystal Structures Of Erythrina Cristagalli Lectin With Bound N-Linked Oligosaccharide And Lactose
Glycobiology V. 14 923 2004
PubMed-ID: 15201215  |  Reference-DOI: 10.1093/GLYCOB/CWH114

(-) Compounds

Molecule 1 - LECTIN (ECL)
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMTL1015
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Common: COCKSPUR CORAL TREE
    Organism Scientific: ERYTHRINA CRISTA-GALLI
    Organism Taxid: 49817
    Other Details: CONSERVED CIS-PEPTIDE BOND (ALA88-ASP89)

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2GOL3Ligand/IonGLYCEROL
3MN4Ligand/IonMANGANESE (II) ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL2Ligand/IonGLYCEROL
3MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL1Ligand/IonGLYCEROL
3MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:129 , PHE A:131 , ASN A:133 , ASP A:136 , HOH A:2129 , HOH A:2140BINDING SITE FOR RESIDUE CA A1241
02AC2SOFTWAREGLU A:127 , ASP A:129 , ASP A:136 , HIS A:142 , HOH A:2249 , HOH A:2250BINDING SITE FOR RESIDUE MN A1242
03AC3SOFTWAREASP B:129 , PHE B:131 , ASN B:133 , ASP B:136 , HOH B:2123 , HOH B:2138BINDING SITE FOR RESIDUE CA B1241
04AC4SOFTWAREGLU B:127 , ASP B:129 , ASP B:136 , HIS B:142 , HOH B:2241 , HOH B:2242BINDING SITE FOR RESIDUE MN B1242
05AC5SOFTWAREASP C:129 , PHE C:131 , ASN C:133 , ASP C:136 , HOH C:2091 , HOH C:2099BINDING SITE FOR RESIDUE CA C1241
06AC6SOFTWAREGLU C:127 , ASP C:129 , ASP C:136 , HIS C:142 , HOH C:2187 , HOH C:2188BINDING SITE FOR RESIDUE MN C1242
07AC7SOFTWAREASP D:129 , PHE D:131 , ASN D:133 , ASP D:136 , HOH D:2103 , HOH D:2106BINDING SITE FOR RESIDUE CA D1242
08AC8SOFTWAREGLU D:127 , ASP D:129 , ASP D:136 , HIS D:142 , HOH D:2198 , HOH D:2199BINDING SITE FOR RESIDUE MN D1243
09AC9SOFTWAREASP A:89 , GLY A:107 , PHE A:131 , ASN A:133 , GLY A:217 , ALA A:218 , HOH A:2247 , HOH A:2248BINDING SITE FOR RESIDUE GOL A1240
10BC1SOFTWAREASP B:89 , TYR B:106 , GLY B:107 , PHE B:131 , ASN B:133 , GLY B:217 , ALA B:218 , HOH B:2239 , HOH B:2240BINDING SITE FOR RESIDUE GOL B1240
11BC2SOFTWAREASP D:89 , GLY D:107 , PHE D:131 , ASN D:133 , GLY D:217 , ALA D:218BINDING SITE FOR RESIDUE GOL D1241

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1UZZ)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Arg A:84 -Pro A:85
2Ala A:88 -Asp A:89
3Val A:140 -Pro A:141
4Arg B:84 -Pro B:85
5Ala B:88 -Asp B:89
6Val B:140 -Pro B:141
7Arg C:84 -Pro C:85
8Ala C:88 -Asp C:89
9Val C:140 -Pro C:141
10Arg D:84 -Pro D:85
11Ala D:88 -Asp D:89
12Val D:140 -Pro D:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UZZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1UZZ)

(-) Exons   (0, 0)

(no "Exon" information available for 1UZZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:240
 aligned with Q6YD91_ERYCG | Q6YD91 from UniProtKB/TrEMBL  Length:242

    Alignment length:240
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
         Q6YD91_ERYCG     1 VETISFSFSEFEPGNNDLTLQGAAIITQSGVLQLTKINQNGMPAWDSTGRTLYTKPVHIWDMTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKPAQGYGYLGVFNNSKQDNSYQTLAVEFDTFSNPWDPPQVPHIGIDVNSIRSIKTQPFQLDNGQVANVVIKYDASSKILLAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSGATGAQRDAAETHDVYSWSFHASLPET 240
               SCOP domains d1uzza_ A: Legume lectin                                                                                                                                                                                                                         SCOP domains
               CATH domains 1uzzA00 A:1-240  [code=2.60.120.200, no name defined]                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.........eeeee..ee.....ee..............eeeeee...ee..........eeeeeeeee...........eeeeeeee........hhhhh........hhhhh.eeeeee............eeeeee......eeee........eeeeeeee....eeeeeee......eeeeeee.hhhhhh..eeeeeeeeee..........eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1uzz A   1 VETISFSFSEFEPGNNDLTLQGAAIITQSGVLQLTKINQNGMPAWDSTGRTLYTKPVHIWDMTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKPAQGYGYLGVFNNSKQDNSYQTLAVEFDTFSNPWDPPQVPHIGIDVNSIRSIKTQPFQLDNGQVANVVIKYDASSKILLAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSGATGAQRDAAETHDVYSWSFHASLPET 240
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240


Chain B from PDB  Type:PROTEIN  Length:240
 aligned with Q6YD91_ERYCG | Q6YD91 from UniProtKB/TrEMBL  Length:242

    Alignment length:240
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
         Q6YD91_ERYCG     1 VETISFSFSEFEPGNNDLTLQGAAIITQSGVLQLTKINQNGMPAWDSTGRTLYTKPVHIWDMTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKPAQGYGYLGVFNNSKQDNSYQTLAVEFDTFSNPWDPPQVPHIGIDVNSIRSIKTQPFQLDNGQVANVVIKYDASSKILLAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSGATGAQRDAAETHDVYSWSFHASLPET 240
               SCOP domains d1uzzb_ B: Legume lectin                                                                                                                                                                                                                         SCOP domains
               CATH domains 1uzzB00 B:1-240  [code=2.60.120.200, no name defined]                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.........eeeee..ee.....ee..............eeeeee...ee..........eeeeeeeee...........eeeeeeee........hhhhh........hhhhh.eeeeee............eeeeee......eeee.......eeeeeeeee....eeeeeee......eeeeeee.hhhhhh..eeeeeeeeee..........eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1uzz B   1 VETISFSFSEFEPGNNDLTLQGAAIITQSGVLQLTKINQNGMPAWDSTGRTLYTKPVHIWDMTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKPAQGYGYLGVFNNSKQDNSYQTLAVEFDTFSNPWDPPQVPHIGIDVNSIRSIKTQPFQLDNGQVANVVIKYDASSKILLAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSGATGAQRDAAETHDVYSWSFHASLPET 240
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240


Chain C from PDB  Type:PROTEIN  Length:241
 aligned with Q6YD91_ERYCG | Q6YD91 from UniProtKB/TrEMBL  Length:242

    Alignment length:241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
         Q6YD91_ERYCG     1 VETISFSFSEFEPGNNDLTLQGAAIITQSGVLQLTKINQNGMPAWDSTGRTLYTKPVHIWDMTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKPAQGYGYLGVFNNSKQDNSYQTLAVEFDTFSNPWDPPQVPHIGIDVNSIRSIKTQPFQLDNGQVANVVIKYDASSKILLAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSGATGAQRDAAETHDVYSWSFHASLPETN 241
               SCOP domains d1uzzc_ C: Legume lectin                                                                                                                                                                                                                          SCOP domains
               CATH domains 1uzzC00 C:1-241  [code=2.60.120.200, no name defined]                                                                                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.........eeeee..ee.....ee..............eeeeee...ee..........eeeeeeeee...........eeeeeeee........hhhhh........hhhhh.eeeeee............eeeeee......eeee.......eeeeeeeee....eeeeeee......eeeeeee.hhhhhh..eeeeeeeeee..........eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uzz C   1 VETISFSFSEFEPGNNDLTLQGAAIITQSGVLQLTKINQNGMPAWDSTGRTLYTKPVHIWDMTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKPAQGYGYLGVFNNSKQDNSYQTLAVEFDTFSNPWDPPQVPHIGIDVNSIRSIKTQPFQLDNGQVANVVIKYDASSKILLAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSGATGAQRDAAETHDVYSWSFHASLPETN 241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 


Chain D from PDB  Type:PROTEIN  Length:241
 aligned with Q6YD91_ERYCG | Q6YD91 from UniProtKB/TrEMBL  Length:242

    Alignment length:241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
         Q6YD91_ERYCG     1 VETISFSFSEFEPGNNDLTLQGAAIITQSGVLQLTKINQNGMPAWDSTGRTLYTKPVHIWDMTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKPAQGYGYLGVFNNSKQDNSYQTLAVEFDTFSNPWDPPQVPHIGIDVNSIRSIKTQPFQLDNGQVANVVIKYDASSKILLAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSGATGAQRDAAETHDVYSWSFHASLPETN 241
               SCOP domains d1uzzd_ D: Legume lectin                                                                                                                                                                                                                          SCOP domains
               CATH domains 1uzzD00 D:1-241  [code=2.60.120.200, no name defined]                                                                                                                                                                                             CATH domains
           Pfam domains (1) -Lectin_legB-1uzzD01 D:2-234                                                                                                                                                                                                              ------- Pfam domains (1)
           Pfam domains (2) -Lectin_legB-1uzzD02 D:2-234                                                                                                                                                                                                              ------- Pfam domains (2)
           Pfam domains (3) -Lectin_legB-1uzzD03 D:2-234                                                                                                                                                                                                              ------- Pfam domains (3)
           Pfam domains (4) -Lectin_legB-1uzzD04 D:2-234                                                                                                                                                                                                              ------- Pfam domains (4)
         Sec.struct. author .eeeeeee.........eeeee..ee.....ee..............eeeeee...ee..........eeeeeeeee...........eeeeeeee........hhhhh........hhhhh.eeeeee............eeeeee......eeee........eeeeeeee....eeeeeee......eeeeeee.hhhhhh..eeeeeeeeee..........eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1uzz D   1 VETISFSFSEFEPGNNDLTLQGAAIITQSGVLQLTKINQNGMPAWDSTGRTLYTKPVHIWDMTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKPAQGYGYLGVFNNSKQDNSYQTLAVEFDTFSNPWDPPQVPHIGIDVNSIRSIKTQPFQLDNGQVANVVIKYDASSKILLAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSGATGAQRDAAETHDVYSWSFHASLPETN 241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: Concanavalin (293)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q6YD91_ERYCG | Q6YD91)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  Cis Peptide Bonds
    Ala A:88 - Asp A:89   [ RasMol ]  
    Ala B:88 - Asp B:89   [ RasMol ]  
    Ala C:88 - Asp C:89   [ RasMol ]  
    Ala D:88 - Asp D:89   [ RasMol ]  
    Arg A:84 - Pro A:85   [ RasMol ]  
    Arg B:84 - Pro B:85   [ RasMol ]  
    Arg C:84 - Pro C:85   [ RasMol ]  
    Arg D:84 - Pro D:85   [ RasMol ]  
    Val A:140 - Pro A:141   [ RasMol ]  
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  1uzz
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  Q6YD91_ERYCG | Q6YD91
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6YD91_ERYCG | Q6YD91: 1uzy 1v00

(-) Related Entries Specified in the PDB File

1uzy ERYTHRINA CRYSTAGALLI LECTIN
1v00 ERYTHRINA CRYSTAGALLI LECTIN