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(-) Description

Title :  ANTI-LEWIS X FAB FRAGMENT UNCOMPLEXED
 
Authors :  A. M. M. Van Roon, N. S. Pannu, J. P. M. De Vrind, C. H. Hokke, A. M. Deelde G. A. Van Der Marel, J. H. Van Boom, J. P. Abrahams
Date :  05 Mar 04  (Deposition) - 29 Jun 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  E,F,H,L,M,P,V,W
Biol. Unit 1:  E,F  (1x)
Biol. Unit 2:  H,L  (1x)
Biol. Unit 3:  V,W  (1x)
Biol. Unit 4:  M,P  (1x)
Keywords :  Immune System, Antibody/Complex, Antibody, Anti-Carbohydrate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. M. Van Roon, N. S. Pannu, J. P. M. De Vrind, G. A. Van Der Marel, J. H. Van Boom, C. H. Hokke, A. M. Deelder, J. P. Abrahams
Structure Of An Anti-Lewis X Fab Fragment In Complex With Its Lewis X Antigen
Structure V. 12 1227 2004
PubMed-ID: 15242599  |  Reference-DOI: 10.1016/J.STR.2004.05.008

(-) Compounds

Molecule 1 - IGG FAB (IGG3, KAPPA) LIGHT CHAIN 291-2G3-A
    Cell Line: MURINE HYBRIDOMA
    Chains: L, E, M, V
    Fragment: FAB FRAGMENT LIGHT CHAIN, RESIDUES 1-212
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 2 - IGG FAB (IGG3, KAPPA) HEAVY CHAIN 291-2G3-A
    Cell Line: MURINE HYBRIDOMA
    Chains: H, F, P, W
    Fragment: FAB FRAGMENT HEAVY CHAIN, RESIDUES 1-213
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : EFHLMPVW
Biological Unit 1 (1x): EF      
Biological Unit 2 (1x):   HL    
Biological Unit 3 (1x):       VW
Biological Unit 4 (1x):     MP  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU E:184 , ARG E:187 , HIS E:188 , GLU M:153 , ARG M:154 , GLN M:155 , ASN M:156BINDING SITE FOR RESIDUE SO4 E1211
2AC2SOFTWAREARG L:154 , ARG L:187 , HIS L:188 , GLU V:153 , ARG V:154 , GLN V:155 , ASN V:156 , HOH V:2020BINDING SITE FOR RESIDUE SO4 L1211
3AC3SOFTWAREARG E:154 , GLN E:155 , ASN E:156 , GLU M:184 , ARG M:187 , HIS M:188BINDING SITE FOR RESIDUE SO4 M1212
4AC4SOFTWAREARG L:154 , GLN L:155 , ASN L:156 , ARG V:154 , GLU V:184 , ARG V:187 , HIS V:188BINDING SITE FOR RESIDUE SO4 V1213

(-) SS Bonds  (20, 20)

Asymmetric Unit
No.Residues
1E:23 -E:88
2E:133 -E:193
3F:22 -F:92
4F:140 -F:195
5F:140 -F:195
6H:22 -H:92
7H:140 -H:195
8H:140 -H:195
9L:23 -L:88
10L:133 -L:193
11M:23 -M:88
12M:133 -M:193
13P:22 -P:92
14P:140 -P:195
15P:140 -P:195
16V:23 -V:88
17V:133 -V:193
18W:22 -W:92
19W:140 -W:195
20W:140 -W:195

(-) Cis Peptide Bonds  (21, 21)

Asymmetric Unit
No.Residues
1Val E:94 -Pro E:95
2Tyr E:139 -Pro E:140
3Phe F:146 -Pro F:147
4Glu F:148 -Pro F:149
5Trp F:188 -Pro F:189
6Phe H:146 -Pro H:147
7Glu H:148 -Pro H:149
8Trp H:188 -Pro H:189
9Val L:94 -Pro L:95
10Tyr L:139 -Pro L:140
11Val M:94 -Pro M:95
12Tyr M:139 -Pro M:140
13Phe P:146 -Pro P:147
14Glu P:148 -Pro P:149
15Trp P:188 -Pro P:189
16Pro P:189 -Ser P:190
17Val V:94 -Pro V:95
18Tyr V:139 -Pro V:140
19Phe W:146 -Pro W:147
20Glu W:148 -Pro W:149
21Trp W:188 -Pro W:189

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UZ6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1UZ6)

(-) Exons   (0, 0)

(no "Exon" information available for 1UZ6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain E from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains d1uz6e1 E:1-106 Immunoglobulin light chain kappa variable domain, VL-kappa                                     -d1uz6e2 E:107-210 Immunoglobulin light chain kappa constant domain, CL-kappa                      - SCOP domains
               CATH domains 1uz6E01 E:1-107 Immunoglobulins                                                                                  1uz6E02 E:108-210 Immunoglobulins                                                                - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.......ee....eeeeeee............eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...ee..ee......eeeee..hhhhhh..eeeeeeeeeee......eeeee..ee....eeeee.........eeeeeeeeeehhhhhhh.eeeeee..eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1uz6 E    1 DIVMTQAAFSNPVTLGTSASISCRSSKSLLYSNGITYLYWYLQKPGQSPQLLIYQMSNLASGVPDRFSSSGSGTDFTLRISRVEAEDVGVYYCAQNLEVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATPIVKSFNRN  211
                                    10        20       27C||      35        45        55        65        75        85        95       105 |     114       124       134       144       154       164       174       184       194 ||    210 
                                                     27A||||                                                                            106A                                                                                       196|        
                                                      27B|||                                                                                                                                                                        203        
                                                       27C||                                                                                                                                                                                   
                                                        27D|                                                                                                                                                                                   
                                                         27E                                                                                                                                                                                   


Chain F from PDB  Type:PROTEIN  Length:209
 aligned with HVM41_MOUSE | P01811 from UniProtKB/Swiss-Prot  Length:117

    Alignment length:209
                                                                                                                                              117                                                                                            
                                    10        20        30        40        50        60        70        80        90       100       110      |  -         -         -         -         -         -         -         -         -         
         HVM41_MOUSE      1 EVKLLESGGGLVQPGGSLKLSCAASGFDFSGYWMSWVRQAPGKGLEWIGEINPDSSTINYTPFLKDKFIISRDNAKNTLFLQMSKVRSEDTALYFCARNWDVGFDYWGQVTTLTVSS--------------------------------------------------------------------------------------------    -
               SCOP domains d1uz6f1 F:1-113 Immunoglobulin heavy chain variable domain, VH                                                       d1uz6f2 F:114-212 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma            - SCOP domains
               CATH domains 1uz6F01 F:1-112 Immunoglobulins                                                                                     -1uz6F02 F:114-213 Immunoglobulins                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeee.......ee...eeeee........eeeee...eeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeee..........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1uz6 F    1 EVKLLESGGGLVQPGGSQKLSCAASGFDFSGYWMSWVRQAPGKGLEWIGEINPDSSTINYTPSLKDKFIISRDNAKNTLYLQMSKVRSEDTALYYCARETGTRFDYWGQGTTLTVSSATTTAPSVYPLVPSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKRIEPR  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96       106       116       126|      144       154       164       174       184       194       204         
                                                                              52A                            82A||                                         126|                                                                              
                                                                                                              82B|                                          135                                                                              
                                                                                                               82C                                                                                                                           


Chain H from PDB  Type:PROTEIN  Length:211
 aligned with HVM41_MOUSE | P01811 from UniProtKB/Swiss-Prot  Length:117

    Alignment length:211
                                                                                                                                              117                                                                                              
                                    10        20        30        40        50        60        70        80        90       100       110      |  -         -         -         -         -         -         -         -         -         - 
         HVM41_MOUSE      1 EVKLLESGGGLVQPGGSLKLSCAASGFDFSGYWMSWVRQAPGKGLEWIGEINPDSSTINYTPFLKDKFIISRDNAKNTLFLQMSKVRSEDTALYFCARNWDVGFDYWGQVTTLTVSS----------------------------------------------------------------------------------------------    -
               SCOP domains d1uz6h1 H:1-113 Immunoglobulin heavy chain variable domain, VH                                                       d1uz6h2 H:114-212 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma              - SCOP domains
               CATH domains 1uz6H01 H:1-112 Immunoglobulins                                                                                     -1uz6H02 H:114-213 Immunoglobulins                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeee.......ee...eeeee........eeeee....eeeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeeee.........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1uz6 H    1 EVKLLESGGGLVQPGGSQKLSCAASGFDFSGYWMSWVRQAPGKGLEWIGEINPDSSTINYTPSLKDKFIISRDNAKNTLYLQMSKVRSEDTALYYCARETGTRFDYWGQGTTLTVSSATTTAPSVYPLVPGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKRIEPR  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96       106       116       126|      142       152       162       172       182       192       202       212 
                                                                              52A                            82A||                                         126|                                                                                
                                                                                                              82B|                                          133                                                                                
                                                                                                               82C                                                                                                                             


Chain L from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains d1uz6l1 L:1-106 Immunoglobulin light chain kappa variable domain, VL-kappa                                     -d1uz6l2 L:107-210 Immunoglobulin light chain kappa constant domain, CL-kappa                      - SCOP domains
               CATH domains 1uz6L01 L:1-107 Immunoglobulins                                                                                  1uz6L02 L:108-210 Immunoglobulins                                                                - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.......ee....eeeeeee............eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...ee..ee......eeeee..hhhhhh..eeeeeeeeeee......eeeee..eee...eeeee.........eeeeeeeeeehhhhhhh.eeeeee..eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1uz6 L    1 DIVMTQAAFSNPVTLGTSASISCRSSKSLLYSNGITYLYWYLQKPGQSPQLLIYQMSNLASGVPDRFSSSGSGTDFTLRISRVEAEDVGVYYCAQNLEVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATPIVKSFNRN  211
                                    10        20       27C||      35        45        55        65        75        85        95       105 |     114       124       134       144       154       164       174       184       194 ||    210 
                                                     27A||||                                                                            106A                                                                                       196|        
                                                      27B|||                                                                                                                                                                        203        
                                                       27C||                                                                                                                                                                                   
                                                        27D|                                                                                                                                                                                   
                                                         27E                                                                                                                                                                                   


Chain M from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains d1uz6m1 M:1-106 Immunoglobulin light chain kappa variable domain, VL-kappa                                     -d1uz6m2 M:107-210 Immunoglobulin light chain kappa constant domain, CL-kappa                      -- SCOP domains
               CATH domains 1uz6M01 M:1-107 Immunoglobulins                                                                                  1uz6M02 M:108-210 Immunoglobulins                                                                -- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...eeeeee....eeeeeee............eeeeee.....eeeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeeee......eeeee..hhhhhhh.eeeeeeeeeee......eeeee..eee...eeeee.........eeeeeeeeeehhhhhh..eeeeee..eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1uz6 M    1 DIVMTQAAFSNPVTLGTSASISCRSSKSLLYSNGITYLYWYLQKPGQSPQLLIYQMSNLASGVPDRFSSSGSGTDFTLRISRVEAEDVGVYYCAQNLEVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATPIVKSFNRNR  212
                                    10        20       27C||      35        45        55        65        75        85        95       105 |     114       124       134       144       154       164       174       184       194 ||    210  
                                                     27A||||                                                                            106A                                                                                       196|         
                                                      27B|||                                                                                                                                                                        203         
                                                       27C||                                                                                                                                                                                    
                                                        27D|                                                                                                                                                                                    
                                                         27E                                                                                                                                                                                    


Chain P from PDB  Type:PROTEIN  Length:212
 aligned with HVM41_MOUSE | P01811 from UniProtKB/Swiss-Prot  Length:117

    Alignment length:212
                                                                                                                                              117                                                                                               
                                    10        20        30        40        50        60        70        80        90       100       110      |  -         -         -         -         -         -         -         -         -         -  
         HVM41_MOUSE      1 EVKLLESGGGLVQPGGSLKLSCAASGFDFSGYWMSWVRQAPGKGLEWIGEINPDSSTINYTPFLKDKFIISRDNAKNTLFLQMSKVRSEDTALYFCARNWDVGFDYWGQVTTLTVSS-----------------------------------------------------------------------------------------------    -
               SCOP domains d1uz6p1 P:1-113 Immunoglobulin heavy chain variable domain, VH                                                       d1uz6p2 P:114-212 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma               - SCOP domains
               CATH domains 1uz6P01 P:1-112 Immunoglobulins                                                                                     -1uz6P02 P:114-213 Immunoglobulins                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeee.......ee...eeeee........eeeee.....eeeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeeee.........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1uz6 P    1 EVKLLESGGGLVQPGGSQKLSCAASGFDFSGYWMSWVRQAPGKGLEWIGEINPDSSTINYTPSLKDKFIISRDNAKNTLYLQMSKVRSEDTALYYCARETGTRFDYWGQGTTLTVSSATTTAPSVYPLVPSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKRIEPR  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96       106       116       126|      141       151       161       171       181       191       201       211  
                                                                              52A                            82A||                                         126|                                                                                 
                                                                                                              82B|                                          132                                                                                 
                                                                                                               82C                                                                                                                              


Chain V from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains d1uz6v1 V:1-106 Immunoglobulin light chain kappa variable domain, VL-kappa                                     -d1uz6v2 V:107-210 Immunoglobulin light chain kappa constant domain, CL-kappa                      -- SCOP domains
               CATH domains 1uz6V01 V:1-107 Immunoglobulins                                                                                  1uz6V02 V:108-210 Immunoglobulins                                                                -- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.......ee....eeeeeee............eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eee.ee......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhh..eeeeeee.eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1uz6 V    1 DIVMTQAAFSNPVTLGTSASISCRSSKSLLYSNGITYLYWYLQKPGQSPQLLIYQMSNLASGVPDRFSSSGSGTDFTLRISRVEAEDVGVYYCAQNLEVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATPIVKSFNRNR  212
                                    10        20       27C||      35        45        55        65        75        85        95       105 |     114       124       134       144       154       164       174       184       194 ||    210  
                                                     27A||||                                                                            106A                                                                                       196|         
                                                      27B|||                                                                                                                                                                        203         
                                                       27C||                                                                                                                                                                                    
                                                        27D|                                                                                                                                                                                    
                                                         27E                                                                                                                                                                                    


Chain W from PDB  Type:PROTEIN  Length:212
 aligned with HVM41_MOUSE | P01811 from UniProtKB/Swiss-Prot  Length:117

    Alignment length:212
                                                                                                                                              117                                                                                               
                                    10        20        30        40        50        60        70        80        90       100       110      |  -         -         -         -         -         -         -         -         -         -  
         HVM41_MOUSE      1 EVKLLESGGGLVQPGGSLKLSCAASGFDFSGYWMSWVRQAPGKGLEWIGEINPDSSTINYTPFLKDKFIISRDNAKNTLFLQMSKVRSEDTALYFCARNWDVGFDYWGQVTTLTVSS-----------------------------------------------------------------------------------------------    -
               SCOP domains d1uz6w1 W:1-113 Immunoglobulin heavy chain variable domain, VH                                                       d1uz6w2 W:114-212 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma               - SCOP domains
               CATH domains 1uz6W01 W:1-112 Immunoglobulins                                                                                     -1uz6W02 W:114-213 Immunoglobulins                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeee.......ee...eeeee........eeeee.....eeeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeeee.........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1uz6 W    1 EVKLLESGGGLVQPGGSQKLSCAASGFDFSGYWMSWVRQAPGKGLEWIGEINPDSSTINYTPSLKDKFIISRDNAKNTLYLQMSKVRSEDTALYYCARETGTRFDYWGQGTTLTVSSATTTAPSVYPLVPSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKRIEPR  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96       106       116       126|      141       151       161       171       181       191       201       211  
                                                                              52A                            82A||                                         126|                                                                                 
                                                                                                              82B|                                          132                                                                                 
                                                                                                               82C
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 16)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 16)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Immunoglobulin-like (3897)
(-)
Homologous Superfamily: Immunoglobulins (2282)
(-)
Mouse (Mus musculus) (152)
1a1uz6E02E:108-210
1b1uz6L02L:108-210
1c1uz6M02M:108-210
1d1uz6V02V:108-210
1e1uz6P02P:114-213
1f1uz6W02W:114-213
1g1uz6H02H:114-213
1h1uz6F02F:114-213
1i1uz6E01E:1-107
1j1uz6L01L:1-107
1k1uz6M01M:1-107
1l1uz6V01V:1-107
1m1uz6F01F:1-112
1n1uz6H01H:1-112
1o1uz6P01P:1-112
1p1uz6W01W:1-112

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1UZ6)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain F,H,P,W   (HVM41_MOUSE | P01811)
molecular function
    GO:0003823    antigen binding    Interacting selectively and non-covalently with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen.

 Visualization

(-) Interactive Views

Asymmetric Unit
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        HVM41_MOUSE | P01811: 1uz8

(-) Related Entries Specified in the PDB File

1uz8 ANTI-LEWIS X FAB FRAGMENT IN COMPLEX WITH LEWIS X