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1UZ6
Asym. Unit
Info
Asym.Unit (283 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
Biol.Unit 3 (72 KB)
Biol.Unit 4 (72 KB)
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(1)
Title
:
ANTI-LEWIS X FAB FRAGMENT UNCOMPLEXED
Authors
:
A. M. M. Van Roon, N. S. Pannu, J. P. M. De Vrind, C. H. Hokke, A. M. Deelde G. A. Van Der Marel, J. H. Van Boom, J. P. Abrahams
Date
:
05 Mar 04 (Deposition) - 29 Jun 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : E,F,H,L,M,P,V,W
Biol. Unit 1: E,F (1x)
Biol. Unit 2: H,L (1x)
Biol. Unit 3: V,W (1x)
Biol. Unit 4: M,P (1x)
Keywords
:
Immune System, Antibody/Complex, Antibody, Anti-Carbohydrate
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. M. M. Van Roon, N. S. Pannu, J. P. M. De Vrind, G. A. Van Der Marel, J. H. Van Boom, C. H. Hokke, A. M. Deelder, J. P. Abrahams
Structure Of An Anti-Lewis X Fab Fragment In Complex With Its Lewis X Antigen
Structure V. 12 1227 2004
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU E:184 , ARG E:187 , HIS E:188 , GLU M:153 , ARG M:154 , GLN M:155 , ASN M:156
BINDING SITE FOR RESIDUE SO4 E1211
2
AC2
SOFTWARE
ARG L:154 , ARG L:187 , HIS L:188 , GLU V:153 , ARG V:154 , GLN V:155 , ASN V:156 , HOH V:2020
BINDING SITE FOR RESIDUE SO4 L1211
3
AC3
SOFTWARE
ARG E:154 , GLN E:155 , ASN E:156 , GLU M:184 , ARG M:187 , HIS M:188
BINDING SITE FOR RESIDUE SO4 M1212
4
AC4
SOFTWARE
ARG L:154 , GLN L:155 , ASN L:156 , ARG V:154 , GLU V:184 , ARG V:187 , HIS V:188
BINDING SITE FOR RESIDUE SO4 V1213
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 16)
Info
All SCOP Domains
1a: SCOP_d1uz6f2 (F:114-212)
1b: SCOP_d1uz6h2 (H:114-212)
1c: SCOP_d1uz6p2 (P:114-212)
1d: SCOP_d1uz6w2 (W:114-212)
2a: SCOP_d1uz6e2 (E:107-210)
2b: SCOP_d1uz6l2 (L:107-210)
2c: SCOP_d1uz6m2 (M:107-210)
2d: SCOP_d1uz6v2 (V:107-210)
3a: SCOP_d1uz6f1 (F:1-113)
3b: SCOP_d1uz6h1 (H:1-113)
3c: SCOP_d1uz6p1 (P:1-113)
3d: SCOP_d1uz6w1 (W:1-113)
4a: SCOP_d1uz6e1 (E:1-106)
4b: SCOP_d1uz6l1 (L:1-106)
4c: SCOP_d1uz6m1 (M:1-106)
4d: SCOP_d1uz6v1 (V:1-106)
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus), gamma3 [TaxId: 10090]
(8)
1a
d1uz6f2
F:114-212
1b
d1uz6h2
H:114-212
1c
d1uz6p2
P:114-212
1d
d1uz6w2
W:114-212
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
2a
d1uz6e2
E:107-210
2b
d1uz6l2
L:107-210
2c
d1uz6m2
M:107-210
2d
d1uz6v2
V:107-210
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
(58)
3a
d1uz6f1
F:1-113
3b
d1uz6h1
H:1-113
3c
d1uz6p1
P:1-113
3d
d1uz6w1
W:1-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
(131)
4a
d1uz6e1
E:1-106
4b
d1uz6l1
L:1-106
4c
d1uz6m1
M:1-106
4d
d1uz6v1
V:1-106
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CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1uz6E02 (E:108-210)
1b: CATH_1uz6L02 (L:108-210)
1c: CATH_1uz6M02 (M:108-210)
1d: CATH_1uz6V02 (V:108-210)
1e: CATH_1uz6P02 (P:114-213)
1f: CATH_1uz6W02 (W:114-213)
1g: CATH_1uz6H02 (H:114-213)
1h: CATH_1uz6F02 (F:114-213)
1i: CATH_1uz6E01 (E:1-107)
1j: CATH_1uz6L01 (L:1-107)
1k: CATH_1uz6M01 (M:1-107)
1l: CATH_1uz6V01 (V:1-107)
1m: CATH_1uz6F01 (F:1-112)
1n: CATH_1uz6H01 (H:1-112)
1o: CATH_1uz6P01 (P:1-112)
1p: CATH_1uz6W01 (W:1-112)
View:
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Mouse (Mus musculus)
(152)
1a
1uz6E02
E:108-210
1b
1uz6L02
L:108-210
1c
1uz6M02
M:108-210
1d
1uz6V02
V:108-210
1e
1uz6P02
P:114-213
1f
1uz6W02
W:114-213
1g
1uz6H02
H:114-213
1h
1uz6F02
F:114-213
1i
1uz6E01
E:1-107
1j
1uz6L01
L:1-107
1k
1uz6M01
M:1-107
1l
1uz6V01
V:1-107
1m
1uz6F01
F:1-112
1n
1uz6H01
H:1-112
1o
1uz6P01
P:1-112
1p
1uz6W01
W:1-112
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain W
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (283 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
Biol.Unit 2 (72 KB)
Header - Biol.Unit 2
Biol.Unit 3 (72 KB)
Header - Biol.Unit 3
Biol.Unit 4 (72 KB)
Header - Biol.Unit 4
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