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Title :   NMR STRUCTURE OF A SYNTHETIC SMALL MOLECULE, RBT203, BOUND TO HIV-1 TAR RNA

Authors :   B. Davis, M. Afshar, G. Varani, J. Karn, A. I. H. Murchie, G. Lentzen, M. J. Drysdale, A. J. Potter, J. Bower, F. Aboul-Ela

Date :   18 Dec 03 (Deposition) - 15 Mar 04 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : B

Keywords :   Hiv-1, Tar Rna, Drug Design, Ligand-Rna Interaction, Rna Bulge (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Davis, M. Afshar, G. Varani, A. I. H. Murchie, J. Karn, G. Lentzen, M. J. Drysdale, J. Bower, A. J. Potter, F. Aboul-Ela
Rational Design Of Inhibitors Of Hiv-1 Tar Rna Through The Stabilisation Of Electrostatic "Hot Spots"
J. Mol. Biol. V. 336 343 2004
PubMed-ID: 14757049 | Reference-DOI: 10.1016/J.JMB.2003.12.046
(for further references see the PDB file header)

Compounds

*Molecule 1 - RNA (5'-(GPGPCPAPGPAPUPCPUPGPAPGP CPCPUPGPGPGPAPGPCPUPCPUPCPUPGPCPC) -3')**
	Chains	:	B
	Organism Common	:	HIV-1
	Organism Scientific	:	HUMAN IMMUNODEFICIENCY VIRUS 1 (CLONE 12)
	Organism Taxid	:	11706
	Other Details	:	BULGED STEM LOOP REGION FROM 5'LTR OF HIV-1 MRNA-BINDING SITE FOR TRANSCRIPTIONAL ACTIVATOR PROTEIN TAT.
	Other Details - Source	:	29 NUCLEOTIDE SEQUENCE COMPRISING PRIMARY BINDING SITE OF HIV-1 TAT, SYNTHESIZED USING T7 RNA POLYMERASE OFF OF A DNA TEMPLATE
	Synonym	:	HIV-1 TAR RNA
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain B from PDB  Type:RNA  Length:29
                                                            
                  1uud B 17 GGCAGAUCUGAGCCUGGGAGCUCUCUGCC 45
                                    26        36

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Classification and Annotation

SCOP Domains (0, 0)

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