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(-) Description

Title :  CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR P FROM THERMUS THERMOPHILUS HB8
 
Authors :  K. Hanawa-Suetsugu, S. Sekine, H. Sakai, C. Hori-Takemoto, T. Terada, S. Kuramitsu, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  09 May 03  (Deposition) - 25 May 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Beta Barrel, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Hanawa-Suetsugu, S. Sekine, H. Sakai, C. Hori-Takemoto, T. Terada, S. Unzai, J. R. H. Tame, S. Kuramitsu, M. Shirouzu, S. Yokoyama
Crystal Structure Of Elongation Factor P From Thermus Thermophilus Hb8
Proc. Natl. Acad. Sci. Usa V. 101 9595 2004
PubMed-ID: 15210970  |  Reference-DOI: 10.1073/PNAS.0308667101
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ELONGATION FACTOR P
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET11A
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid274
    SynonymEF-P, TT0860

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1UEB)

(-) Sites  (0, 0)

(no "Site" information available for 1UEB)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1UEB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1UEB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UEB)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EFPPS01275 Elongation factor P signature.EFP_THET8149-168
 
  2A:149-168
B:349-368
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EFPPS01275 Elongation factor P signature.EFP_THET8149-168
 
  1A:149-168
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EFPPS01275 Elongation factor P signature.EFP_THET8149-168
 
  1-
B:349-368

(-) Exons   (0, 0)

(no "Exon" information available for 1UEB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:184
 aligned with EFP_THET8 | Q76G20 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:184
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180    
            EFP_THET8     1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGAEFFKEGMTALGDMYEGQPIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA 184
               SCOP domains d1ueba1 A:1-63 Elongation factor P N-terminal domain           d1ueba2 A:64-126                                               d1ueba3 A:127-184                                          SCOP domains
               CATH domains 1uebA01 A:1-63  [code=2.30.30.30, no name defined]             1uebA02 A:64-126 Nucleic acid-binding proteins                 1uebA03 A:127-184 Nucleic acid-binding proteins            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.hhh....eeee..eeeeeeeeeeeee.....eeeeeeee.....eeeeeee...eeee..eeeeeeeeeeee..eeeeee.....eeeee.hhh.hhhhh....eeeeeee..eeeeee...eeeeeeee.............eeeeee....eeeee.......eeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------EFP  PDB: A:149-168 ---------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ueb A   1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGAEFFKEGMTALGDMYEGQPIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA 184
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180    

Chain B from PDB  Type:PROTEIN  Length:178
 aligned with EFP_THET8 | Q76G20 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:184
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180    
            EFP_THET8     1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGAEFFKEGMTALGDMYEGQPIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA 184
               SCOP domains d1uebb1 B:201-263 Elongation factor P N-terminal domain        d1uebb2 B:264-326                                              d1uebb3 B:32      7-384                                    SCOP domains
               CATH domains 1uebB01 B:201-263  [code=2.30.30.30, no name defined]          1uebB02 B:264-326 Nucleic acid-binding proteins                1uebB03 B:32      7-384 Nucleic acid-binding proteins      CATH domains
           Pfam domains (1) --EFP_N-1uebB01 B:203-260                                   ------EFP-1uebB03 B:267-320                                 -------Elong-fact-      P_C-1uebB05 B:328-383                  - Pfam domains (1)
           Pfam domains (2) --EFP_N-1uebB02 B:203-260                                   ------EFP-1uebB04 B:267-320                                 -------Elong-fact-      P_C-1uebB06 B:328-383                  - Pfam domains (2)
         Sec.struct. author .ee.hhh....eeee..eeeeeeeeeeeee.....eeeeeeee.....eeeeeee...eeee...eeeeeeeeeee..eeeeee.....eeeehhhhh.hhhhh....eeeeeee..eeeeee...eeeeeeee....------...eeeeee....eeeee.......eeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------EFP  PDB: B:349-368 ---------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ueb B 201 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGAEFFKEGMTALGDMYEGQPIKVTPPTVVELKVVDTPPG------SGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA 384
                                   210       220       230       240       250       260       270       280       290       300       310       320       330       | -    |  350       360       370       380    
                                                                                                                                                                   338    345                                       

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric Unit

(-) CATH Domains  (2, 6)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (3, 6)

Asymmetric Unit
(-)
Clan: KOW (56)
(-)
Clan: OB (224)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (EFP_THET8 | Q76G20)
molecular function
    GO:0003746    translation elongation factor activity    Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
    GO:0043043    peptide biosynthetic process    The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006414    translational elongation    The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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        EFP_THET8 | Q76G204v6a

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