Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)

(-) Description

Title :  THE X-RAY STRUCTURE OF THE PAPILLOMAVIRUS HELICASE IN COMPLEX WITH ITS MOLECULAR MATCHMAKER E2
 
Authors :  E. A. Abbate, J. M. Berger, M. R. Botchan
Date :  24 Jun 04  (Deposition) - 24 Aug 04  (Release) - 14 Jul 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,D,E,F,G,H,J,K,L,M,Q
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  D,E  (1x)
Biol. Unit 3:  F,G  (1x)
Biol. Unit 4:  H,J  (1x)
Biol. Unit 5:  K,L  (1x)
Biol. Unit 6:  M,Q  (1x)
Keywords :  Human Papillomavirus, Helicase, Replication, E1E2 Complex, Aaa+ Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. A. Abbate, J. M. Berger, M. R. Botchan
The X-Ray Structure Of The Papillomavirus Helicase In Complex With Its Molecular Matchmaker E2
Genes Dev. V. 18 1981 2004
PubMed-ID: 15289463  |  Reference-DOI: 10.1101/GAD.1220104
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - REPLICATION PROTEIN E1
    Chains: A, D, F, H, K, M
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMALC2
    Expression System Strain: XA90
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: E1
    Mutation: YES
    Organism Scientific: HUMAN PAPILLOMAVIRUS TYPE 18
    Organism Taxid: 333761
 
Molecule 2 - REGULATORY PROTEIN E2
    Chains: B, E, G, J, L, Q
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX2T
    Expression System Strain: XA90
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: E2
    Organism Scientific: HUMAN PAPILLOMAVIRUS TYPE 18
    Organism Taxid: 333761

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABDEFGHJKLMQ
Biological Unit 1 (1x): AB          
Biological Unit 2 (1x):   DE        
Biological Unit 3 (1x):     FG      
Biological Unit 4 (1x):       HJ    
Biological Unit 5 (1x):         KL  
Biological Unit 6 (1x):           MQ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1TUE)

(-) Sites  (0, 0)

(no "Site" information available for 1TUE)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1TUE)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Glu B:109 -Pro B:110
2Glu E:109 -Pro E:110
3Glu G:109 -Pro G:110
4Glu J:109 -Pro J:110
5Glu L:109 -Pro L:110
6Glu Q:109 -Pro Q:110

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1TUE)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SF3_HELICASE_1PS51206 Superfamily 3 helicase of DNA viruses domain profile.VE1_HPV18458-608
 
 
 
 
 		  6A:458-608
D:458-608
F:458-608
H:458-608
K:458-608
M:458-608
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SF3_HELICASE_1PS51206 Superfamily 3 helicase of DNA viruses domain profile.VE1_HPV18458-608
 
 
 
 
 		  1A:458-608
-
-
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SF3_HELICASE_1PS51206 Superfamily 3 helicase of DNA viruses domain profile.VE1_HPV18458-608
 
 
 
 
 		  1-
D:458-608
-
-
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SF3_HELICASE_1PS51206 Superfamily 3 helicase of DNA viruses domain profile.VE1_HPV18458-608
 
 
 
 
 		  1-
-
F:458-608
-
-
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SF3_HELICASE_1PS51206 Superfamily 3 helicase of DNA viruses domain profile.VE1_HPV18458-608
 
 
 
 
 		  1-
-
-
H:458-608
-
-
Biological Unit 5 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SF3_HELICASE_1PS51206 Superfamily 3 helicase of DNA viruses domain profile.VE1_HPV18458-608
 
 
 
 
 		  1-
-
-
-
K:458-608
-
Biological Unit 6 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SF3_HELICASE_1PS51206 Superfamily 3 helicase of DNA viruses domain profile.VE1_HPV18458-608
 
 
 
 
 		  1-
-
-
-
-
M:458-608

(-) Exons   (0, 0)

(no "Exon" information available for 1TUE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:201
 aligned with VE1_HPV18 | P06789 from UniProtKB/Swiss-Prot  Length:657

    Alignment length:238
                                   401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621        
            VE1_HPV18   392 SNSNAAAFLKSNCQAKYLKDCATMCKHYRRAQKRQMNMSQWIRFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNAFPFDKNGNPVYEINDKNWKCFFERTWSRLDL 629
               SCOP domains d1t                                 uea_ A: Replication protein E1 helicase domain                                                                                                                                                             SCOP domains
               CATH domains 1tu                                 eA00 A:425-629 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...---------------------------------hhhhhhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhhh.ee........hhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhh..eee.----..eee....eeeee.........hhhhhh..eeee.................hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------SF3_HELICASE_1  PDB: A:458-608 UniProt: 458-608                                                                                                        --------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue A 425 SGS---------------------------------NMSQWIRFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISID----PLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNAFPFDKNGNPVYEINDKNWKCFFERTWSRLDL 629
                              |      -         -         -      |431       441       451       461       471       481       491       501       511       521       531       541       551   |   561       571       581       591       601       611       621        
                            427                               428                                                                                                                            555  560                                                                     


Chain B from PDB  Type:PROTEIN  Length:194
 aligned with Q80B71_HPV18 | Q80B71 from UniProtKB/TrEMBL  Length:365

    Alignment length:194
                             1                                                                                                                                                                                                
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189    
         Q80B71_HPV18     - -MQTPKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHF 193
               SCOP domains d1tueb_ B: E2 regulatory, transactivation domain                                                                                                                                                   SCOP domains
               CATH domains 1tueB01 B:0-105  [code=1.10.287.30, no name defined]                                                      1tueB02 B:106-193  [code=2.170.200.10, no name defined]                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee..hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh......eeeeeeeeeeee......eeeeeeeeeeeee.....eeee.eee...eeeeee..eeeeeeehhhhhhhhh....eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue B   0 HMQTPKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHF 193
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189    


Chain B from PDB  Type:PROTEIN  Length:194
 aligned with VE2_HPV18 | P06790 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:194
                             1                                                                                                                                                                                                
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189    
            VE2_HPV18     - -MQTPKETLSERLSCVQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHF 193
               SCOP domains d1tueb_ B: E2 regulatory, transactivation domain                                                                                                                                                   SCOP domains
               CATH domains 1tueB01 B:0-105  [code=1.10.287.30, no name defined]                                                      1tueB02 B:106-193  [code=2.170.200.10, no name defined]                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee..hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh......eeeeeeeeeeee......eeeeeeeeeeeee.....eeee.eee...eeeeee..eeeeeeehhhhhhhhh....eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue B   0 HMQTPKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHF 193
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189    


Chain D from PDB  Type:PROTEIN  Length:202
 aligned with VE1_HPV18 | P06789 from UniProtKB/Swiss-Prot  Length:657

    Alignment length:202
                                   437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627  
            VE1_HPV18   428 NMSQWIRFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNAFPFDKNGNPVYEINDKNWKCFFERTWSRLDL 629
               SCOP domains d1tued_ D: Replication protein E1 helicase domain                                                                                                                                                          SCOP domains
               CATH domains 1tueD00 D:428-629 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhhhhh......eeeee.hhhhhhhhhhhhhhhhhh.ee.......hhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhh...eee.......eee....eeeee.........hhhhhh..eeee.................hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------SF3_HELICASE_1  PDB: D:458-608 UniProt: 458-608                                                                                                        --------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue D 428 NMSQWIRFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNAFPFDKNGNPVYEINDKNWKCFFERTWSRLDL 629
                                   437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627  


Chain E from PDB  Type:PROTEIN  Length:196
 aligned with Q80B71_HPV18 | Q80B71 from UniProtKB/TrEMBL  Length:365

    Alignment length:196
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192      
         Q80B71_HPV18     3 TPKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNVI 198
               SCOP domains d1tuee_ E: E2 regulatory, transactivation domain                                                                                                                                                     SCOP domains
               CATH domains 1tueE01 E:3-105  [code=1.10.287.30, no name defined]                                                   1tueE02 E:106-198  [code=2.170.200.10, no name defined]                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee..hhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhh......eeeeeeeeeeee......eeeeeeeeeeeee.....eeee.eee...eeeeee..eeeeeeehhhhhh.......eeeee..ee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue E   3 TPKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNVI 198
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192      


Chain E from PDB  Type:PROTEIN  Length:196
 aligned with VE2_HPV18 | P06790 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:196
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192      
            VE2_HPV18     3 TPKETLSERLSCVQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNVI 198
               SCOP domains d1tuee_ E: E2 regulatory, transactivation domain                                                                                                                                                     SCOP domains
               CATH domains 1tueE01 E:3-105  [code=1.10.287.30, no name defined]                                                   1tueE02 E:106-198  [code=2.170.200.10, no name defined]                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee..hhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhh......eeeeeeeeeeee......eeeeeeeeeeeee.....eeee.eee...eeeeee..eeeeeeehhhhhh.......eeeee..ee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue E   3 TPKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNVI 198
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192      


Chain F from PDB  Type:PROTEIN  Length:188
 aligned with VE1_HPV18 | P06789 from UniProtKB/Swiss-Prot  Length:657

    Alignment length:201
                                   437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627 
            VE1_HPV18   428 NMSQWIRFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNAFPFDKNGNPVYEINDKNWKCFFERTWSRLD 628
               SCOP domains d1tuef_ F: Replication protein E1 helicase domain                                                                                                                                                         SCOP domains
               CATH domains 1tueF00 F:428-628 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhhhhh......eeeee.hhhhhhhhhhhhhhhhhh.eee..........hhhhh....eee...hhhhhhhhhhhhhhhhh...-------------....eeeee.................eeee.................hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------SF3_HELICASE_1  PDB: F:458-608 UniProt: 458-608                                                                                                        -------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue F 428 NMSQWIRFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNP-------------KCPPILLTTNIHPAKDNRWPYLESRITVFEFPNAFPFDKNGNPVYEINDKNWKCFFERTWSRLD 628
                                   437       447       457       467       477       487       497       507       517       527       537       547   |     -       567       577       587       597       607       617       627 
                                                                                                                                                     551           565                                                               


Chain G from PDB  Type:PROTEIN  Length:196
 aligned with Q80B71_HPV18 | Q80B71 from UniProtKB/TrEMBL  Length:365

    Alignment length:196
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      
         Q80B71_HPV18     4 PKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNVID 199
               SCOP domains d1tueg_ G: E2 regulatory, transactivation domain                                                                                                                                                     SCOP domains
               CATH domains 1tueG01 G:4-105  [code=1.10.287.30, no name defined]                                                  1tueG02 G:106-199  [code=2.170.200.10, no name defined]                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh......eee...eeeeee......eeeee...eeeee.....eeee.eeee..eeeeee..eeeeeeehhhhhh.......eeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue G   4 PKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNVID 199
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      


Chain G from PDB  Type:PROTEIN  Length:196
 aligned with VE2_HPV18 | P06790 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:196
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      
            VE2_HPV18     4 PKETLSERLSCVQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNVID 199
               SCOP domains d1tueg_ G: E2 regulatory, transactivation domain                                                                                                                                                     SCOP domains
               CATH domains 1tueG01 G:4-105  [code=1.10.287.30, no name defined]                                                  1tueG02 G:106-199  [code=2.170.200.10, no name defined]                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh......eee...eeeeee......eeeee...eeeee.....eeee.eeee..eeeeee..eeeeeeehhhhhh.......eeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue G   4 PKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNVID 199
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      


Chain H from PDB  Type:PROTEIN  Length:191
 aligned with VE1_HPV18 | P06789 from UniProtKB/Swiss-Prot  Length:657

    Alignment length:201
                                   437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627 
            VE1_HPV18   428 NMSQWIRFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNAFPFDKNGNPVYEINDKNWKCFFERTWSRLD 628
               SCOP domains d1tueh_ H: Replication protein E1 helicase domain                                                                                                                                                         SCOP domains
               CATH domains 1tueH00 H:428-628 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.....hhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhhh.ee........hhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhh.....----------....eeeee.........hhhhhh..eeee.................hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------SF3_HELICASE_1  PDB: H:458-608 UniProt: 458-608                                                                                                        -------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue H 428 NMSQWIRFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISI----------KCPPILLTTNIHPAKDNRWPYLESRITVFEFPNAFPFDKNGNPVYEINDKNWKCFFERTWSRLD 628
                                   437       447       457       467       477       487       497       507       517       527       537       547      |  -       567       577       587       597       607       617       627 
                                                                                                                                                        554        565                                                               


Chain J from PDB  Type:PROTEIN  Length:194
 aligned with Q80B71_HPV18 | Q80B71 from UniProtKB/TrEMBL  Length:365

    Alignment length:194
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193    
         Q80B71_HPV18     4 PKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNV 197
               SCOP domains d1tuej_ J: E2 regulatory, transactivation domain                                                                                                                                                   SCOP domains
               CATH domains 1tueJ01 J:4-105  [code=1.10.287.30, no name defined]                                                  1tueJ02 J:106-197  [code=2.170.200.10, no name defined]                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee..hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh......eeeeeeeeeeee......eeeeeeeeeeeee.....eeee.eee...eeeeee..eeeeeeehhhhhhhhh....eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue J   4 PKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNV 197
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193    


Chain J from PDB  Type:PROTEIN  Length:194
 aligned with VE2_HPV18 | P06790 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:194
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193    
            VE2_HPV18     4 PKETLSERLSCVQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNV 197
               SCOP domains d1tuej_ J: E2 regulatory, transactivation domain                                                                                                                                                   SCOP domains
               CATH domains 1tueJ01 J:4-105  [code=1.10.287.30, no name defined]                                                  1tueJ02 J:106-197  [code=2.170.200.10, no name defined]                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee..hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh......eeeeeeeeeeee......eeeeeeeeeeeee.....eeee.eee...eeeeee..eeeeeeehhhhhhhhh....eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue J   4 PKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNV 197
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193    


Chain K from PDB  Type:PROTEIN  Length:192
 aligned with VE1_HPV18 | P06789 from UniProtKB/Swiss-Prot  Length:657

    Alignment length:202
                                   437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627  
            VE1_HPV18   428 NMSQWIRFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNAFPFDKNGNPVYEINDKNWKCFFERTWSRLDL 629
               SCOP domains d1tuek_ K: Replication protein E1 helicase domain                                                                                                                                                          SCOP domains
               CATH domains 1tueK00 K:428-629 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhhh.eee.......hhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhh....----------......eeeee.........hhhhhh..eeee.................hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------SF3_HELICASE_1  PDB: K:458-608 UniProt: 458-608                                                                                                        --------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue K 428 NMSQWIRFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPI----------QLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNAFPFDKNGNPVYEINDKNWKCFFERTWSRLDL 629
                                   437       447       457       467       477       487       497       507       517       527       537       547    |    -     | 567       577       587       597       607       617       627  
                                                                                                                                                      552        563                                                                  


Chain L from PDB  Type:PROTEIN  Length:193
 aligned with Q80B71_HPV18 | Q80B71 from UniProtKB/TrEMBL  Length:365

    Alignment length:194
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193    
         Q80B71_HPV18     4 PKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNV 197
               SCOP domains d1tuel_ L: E2 regulatory, transactivation domain                                                                                                                                                   SCOP domains
               CATH domains 1tueL01 L:4-105  [code=1.10.287.30, no name defined]                                                  1tueL02 L:106-197  [code=2.170.200.10, no name defined]                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....ee..ee..hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhh.....eeeeeeeeeeee......eeeeeeeeeeeee.....eeee.eee...eeeeee..eeeeeeehhhhhh...-...eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue L   4 PKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYG-TGTWEVHFGNNV 197
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183| |    193    
                                                                                                                                                                                                              184 |           
                                                                                                                                                                                                                186           


Chain L from PDB  Type:PROTEIN  Length:193
 aligned with VE2_HPV18 | P06790 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:194
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193    
            VE2_HPV18     4 PKETLSERLSCVQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNV 197
               SCOP domains d1tuel_ L: E2 regulatory, transactivation domain                                                                                                                                                   SCOP domains
               CATH domains 1tueL01 L:4-105  [code=1.10.287.30, no name defined]                                                  1tueL02 L:106-197  [code=2.170.200.10, no name defined]                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....ee..ee..hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhh.....eeeeeeeeeeee......eeeeeeeeeeeee.....eeee.eee...eeeeee..eeeeeeehhhhhh...-...eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue L   4 PKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYG-TGTWEVHFGNNV 197
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183| |    193    
                                                                                                                                                                                                              184 |           
                                                                                                                                                                                                                186           


Chain M from PDB  Type:PROTEIN  Length:196
 aligned with VE1_HPV18 | P06789 from UniProtKB/Swiss-Prot  Length:657

    Alignment length:202
                                   437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627  
            VE1_HPV18   428 NMSQWIRFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNAFPFDKNGNPVYEINDKNWKCFFERTWSRLDL 629
               SCOP domains d1tuem_ M: Replication protein E1 helicase domain                                                                                                                                                          SCOP domains
               CATH domains 1tueM00 M:428-629 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                     CATH domains
           Pfam domains (1) PPV_E1_C-1tueM01 M:428-629                                                                                                                                                                                 Pfam domains (1)
           Pfam domains (2) PPV_E1_C-1tueM02 M:428-629                                                                                                                                                                                 Pfam domains (2)
           Pfam domains (3) PPV_E1_C-1tueM03 M:428-629                                                                                                                                                                                 Pfam domains (3)
           Pfam domains (4) PPV_E1_C-1tueM04 M:428-629                                                                                                                                                                                 Pfam domains (4)
           Pfam domains (5) PPV_E1_C-1tueM05 M:428-629                                                                                                                                                                                 Pfam domains (5)
           Pfam domains (6) PPV_E1_C-1tueM06 M:428-629                                                                                                                                                                                 Pfam domains (6)
         Sec.struct. author hhhhhhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhhh.ee........hhhhhhhh....eeeeeehhhhhhhhhhhhhhhhh..ee...-----...ee...eeeee.......-.hhhhhh..eeee.................hhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------SF3_HELICASE_1  PDB: M:458-608 UniProt: 458-608                                                                                                        --------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue M 428 NMSQWIRFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISID-----LIQLKCPPILLTTNIHPAKD-RWPYLESRITVFEFPNAFPFDKNGNPVYEINDKNWKCFFERTWSRLDL 629
                                   437       447       457       467       477       487       497       507       517       527       537       547       | -   |   567       577  | |  587       597       607       617       627  
                                                                                                                                                         555   561                580 |                                               
                                                                                                                                                                                    582                                               


Chain Q from PDB  Type:PROTEIN  Length:194
 aligned with Q80B71_HPV18 | Q80B71 from UniProtKB/TrEMBL  Length:365

    Alignment length:194
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193    
         Q80B71_HPV18     4 PKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNV 197
               SCOP domains d1tueq_ Q: E2 regulatory, transactivation domain                                                                                                                                                   SCOP domains
               CATH domains 1tueQ01 Q:4-105  [code=1.10.287.30, no name defined]                                                  1tueQ02 Q:106-197  [code=2.170.200.10, no name defined]                                      CATH domains
           Pfam domains (1) -PPV_E2_N-1tueQ01 Q:5-197                                                                                                                                                                          Pfam domains (1)
           Pfam domains (2) -PPV_E2_N-1tueQ02 Q:5-197                                                                                                                                                                          Pfam domains (2)
           Pfam domains (3) -PPV_E2_N-1tueQ03 Q:5-197                                                                                                                                                                          Pfam domains (3)
           Pfam domains (4) -PPV_E2_N-1tueQ04 Q:5-197                                                                                                                                                                          Pfam domains (4)
           Pfam domains (5) -PPV_E2_N-1tueQ05 Q:5-197                                                                                                                                                                          Pfam domains (5)
           Pfam domains (6) -PPV_E2_N-1tueQ06 Q:5-197                                                                                                                                                                          Pfam domains (6)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee..hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh......eee...eeeeee......eeeee...eeeee.....eeee.eee...eeeee....eeeeeehhhhhhhhh....eeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue Q   4 PKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNV 197
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193    


Chain Q from PDB  Type:PROTEIN  Length:194
 aligned with VE2_HPV18 | P06790 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:194
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193    
            VE2_HPV18     4 PKETLSERLSCVQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNV 197
               SCOP domains d1tueq_ Q: E2 regulatory, transactivation domain                                                                                                                                                   SCOP domains
               CATH domains 1tueQ01 Q:4-105  [code=1.10.287.30, no name defined]                                                  1tueQ02 Q:106-197  [code=2.170.200.10, no name defined]                                      CATH domains
           Pfam domains (1) -PPV_E2_N-1tueQ01 Q:5-197                                                                                                                                                                          Pfam domains (1)
           Pfam domains (2) -PPV_E2_N-1tueQ02 Q:5-197                                                                                                                                                                          Pfam domains (2)
           Pfam domains (3) -PPV_E2_N-1tueQ03 Q:5-197                                                                                                                                                                          Pfam domains (3)
           Pfam domains (4) -PPV_E2_N-1tueQ04 Q:5-197                                                                                                                                                                          Pfam domains (4)
           Pfam domains (5) -PPV_E2_N-1tueQ05 Q:5-197                                                                                                                                                                          Pfam domains (5)
           Pfam domains (6) -PPV_E2_N-1tueQ06 Q:5-197                                                                                                                                                                          Pfam domains (6)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee..hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh......eee...eeeeee......eeeee...eeeee.....eeee.eee...eeeee....eeeeeehhhhhhhhh....eeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tue Q   4 PKETLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNV 197
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 18)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (2, 12)

Asymmetric Unit
(-)
Clan: P-loop_NTPase (1112)
(-)
Clan: no clan defined [family: PPV_E2_N] (6)

(-) Gene Ontology  (19, 33)

Asymmetric Unit(hide GO term definitions)
Chain A,D,F,H,K,M   (VE1_HPV18 | P06789)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004003    ATP-dependent DNA helicase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016817    hydrolase activity, acting on acid anhydrides    Catalysis of the hydrolysis of any acid anhydride.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0032508    DNA duplex unwinding    The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands.
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0019079    viral genome replication    Any process involved directly in viral genome replication, including viral nucleotide metabolism.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.

Chain B,E,G,J,L,Q   (Q80B71_HPV18 | Q80B71)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006275    regulation of DNA replication    Any process that modulates the frequency, rate or extent of DNA replication.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.

Chain B,E,G,J,L,Q   (VE2_HPV18 | P06790)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006275    regulation of DNA replication    Any process that modulates the frequency, rate or extent of DNA replication.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0044163    host cytoskeleton    Any of the various filamentous elements that form the internal framework of host cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the host cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the host cell. The various elements of the host cytoskeleton not only serve in the maintenance of host cellular shape but also have roles in other host cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1tue)
 
  Sites
(no "Sites" information available for 1tue)
 
  Cis Peptide Bonds
    Glu B:109 - Pro B:110   [ RasMol ]  
    Glu E:109 - Pro E:110   [ RasMol ]  
    Glu G:109 - Pro G:110   [ RasMol ]  
    Glu J:109 - Pro J:110   [ RasMol ]  
    Glu L:109 - Pro L:110   [ RasMol ]  
    Glu Q:109 - Pro Q:110   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Biol. Unit 1 PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format | Biol. Unit 5 PNG format | Biol. Unit 6 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1tue
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q80B71_HPV18 | Q80B71
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  VE1_HPV18 | P06789
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  VE2_HPV18 | P06790
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q80B71_HPV18 | Q80B71
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  VE1_HPV18 | P06789
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  VE2_HPV18 | P06790
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VE1_HPV18 | P06789: 1r9w
        VE2_HPV18 | P06790: 1f9f 1jj4 1qqh

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1TUE)