1TU4 - JenaLib

Asymmetric Unit (4, 32)

No.	Name	Count	Type	Full Name
1	CO	6	Ligand/Ion	COBALT (II) ION
2	GDP	4	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MSE	16	Mod. Amino Acid	SELENOMETHIONINE
4	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 5)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
4	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 7)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
4	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 5)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
4	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 4 (3, 9)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
4	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 5 (3, 52)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	GDP	8	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MSE	32	Mod. Amino Acid	SELENOMETHIONINE
4	SO4	12	Ligand/Ion	SULFATE ION

Biological Unit 6 (3, 26)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	GDP	4	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MSE	16	Mod. Amino Acid	SELENOMETHIONINE
4	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 7 (3, 24)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	GDP	4	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MSE	16	Mod. Amino Acid	SELENOMETHIONINE
4	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 8 (3, 28)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	GDP	4	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MSE	16	Mod. Amino Acid	SELENOMETHIONINE
4	SO4	8	Ligand/Ion	SULFATE ION

Biological Unit 9 (3, 14)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	GDP	2	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
4	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 10 (3, 12)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	GDP	2	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
4	SO4	2	Ligand/Ion	SULFATE ION

Sites (16, 16)

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:34 , HOH A:301 , HOH A:302 , HOH A:308 , GDP A:1200 , HOH D:303	BINDING SITE FOR RESIDUE CO A 1201
02	AC2	SOFTWARE	SER B:34 , HOH B:304 , HOH B:305 , HOH B:306 , HOH B:307 , GDP B:2200	BINDING SITE FOR RESIDUE CO B 2201
03	AC3	SOFTWARE	SER C:34 , HOH C:309 , HOH C:310 , HOH C:311 , HOH C:312 , GDP C:3200	BINDING SITE FOR RESIDUE CO C 3201
04	AC4	SOFTWARE	SER D:34 , HOH D:313 , HOH D:314 , HOH D:315 , HOH D:316 , GDP D:4200	BINDING SITE FOR RESIDUE CO D 4201
05	AC5	SOFTWARE	HIS A:83 , HOH A:395 , GLU B:80 , HIS B:83 , HOH B:396	BINDING SITE FOR RESIDUE CO B 251
06	AC6	SOFTWARE	HIS C:83 , HOH C:397 , HOH C:398 , GLU D:80 , HIS D:83	BINDING SITE FOR RESIDUE CO D 252
07	AC7	SOFTWARE	GLN B:79 , GLU B:80 , ARG B:81 , HOH B:353	BINDING SITE FOR RESIDUE SO4 B 261
08	AC8	SOFTWARE	ALA D:77 , GLY D:78 , GLN D:79 , HOH D:315 , HOH D:316	BINDING SITE FOR RESIDUE SO4 D 262
09	AC9	SOFTWARE	GLN D:79 , GLU D:80 , ARG D:81 , HOH D:490	BINDING SITE FOR RESIDUE SO4 D 263
10	BC1	SOFTWARE	ALA B:77 , GLY B:78 , GLN B:79 , HOH B:306 , HOH B:307 , HOH B:608	BINDING SITE FOR RESIDUE SO4 B 264
11	BC2	SOFTWARE	ARG A:81 , HOH A:552 , GLN B:121 , ASN D:16	BINDING SITE FOR RESIDUE SO4 D 265
12	BC3	SOFTWARE	GLN D:121 , HOH D:522 , HOH D:563	BINDING SITE FOR RESIDUE SO4 D 266
13	BC4	SOFTWARE	GLU A:28 , ALA A:30 , VAL A:31 , GLY A:32 , LYS A:33 , SER A:34 , SER A:35 , ASN A:133 , LYS A:134 , ASP A:136 , LEU A:137 , SER A:163 , ALA A:164 , LYS A:165 , HOH A:302 , HOH A:308 , HOH A:414 , HOH A:433 , HOH A:461 , CO A:1201	BINDING SITE FOR RESIDUE GDP A 1200
14	BC5	SOFTWARE	GLN A:119 , ARG A:120 , ALA A:122 , SER A:123 , PRO A:124 , ALA B:30 , VAL B:31 , GLY B:32 , LYS B:33 , SER B:34 , SER B:35 , ASN B:133 , LYS B:134 , ASP B:136 , LEU B:137 , SER B:163 , ALA B:164 , LYS B:165 , HOH B:307 , HOH B:317 , HOH B:339 , HOH B:345 , HOH B:435 , HOH B:521 , HOH B:595 , CO B:2201	BINDING SITE FOR RESIDUE GDP B 2200
15	BC6	SOFTWARE	GLU C:28 , ALA C:30 , VAL C:31 , GLY C:32 , LYS C:33 , SER C:34 , SER C:35 , ASN C:133 , LYS C:134 , ASP C:136 , SER C:163 , ALA C:164 , LYS C:165 , HOH C:310 , HOH C:311 , HOH C:422 , HOH C:523 , CO C:3201	BINDING SITE FOR RESIDUE GDP C 3200
16	BC7	SOFTWARE	GLN C:119 , ARG C:120 , ALA C:122 , SER C:123 , PRO C:124 , ALA D:30 , VAL D:31 , GLY D:32 , LYS D:33 , SER D:34 , SER D:35 , ASN D:133 , LYS D:134 , ASP D:136 , LEU D:137 , SER D:163 , ALA D:164 , HOH D:313 , HOH D:316 , CO D:4201	BINDING SITE FOR RESIDUE GDP D 4200

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB5A_HUMAN	15-215	2	A:15-183 C:15-183

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB5A_HUMAN	15-215	1	A:15-183 -

Biological Unit 2 (, 0)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB5A_HUMAN	15-215	0	- -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB5A_HUMAN	15-215	1	- C:15-183

Biological Unit 4 (, 0)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB5A_HUMAN	15-215	0	- -

Biological Unit 5 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB5A_HUMAN	15-215	4	A:15-183 C:15-183

Biological Unit 6 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB5A_HUMAN	15-215	2	A:15-183 C:15-183

Biological Unit 7 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB5A_HUMAN	15-215	2	A:15-183 -

Biological Unit 8 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB5A_HUMAN	15-215	2	- C:15-183

Biological Unit 9 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB5A_HUMAN	15-215	1	- C:15-183

Biological Unit 10 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB5A_HUMAN	15-215	1	A:15-183 -

Exons (5, 20)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:169
 aligned with RAB5A_HUMAN | P20339 from UniProtKB/Swiss-Prot  Length:215

    Alignment length:169
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174         
          RAB5A_HUMAN    15 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 183
               SCOP domains d1tu4a_ A: Rab5a                                                                                                                                                          SCOP domains
               CATH domains 1tu4A00 A:15-183 P-loop containing nucleotide triphosphate hydrolases                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee.....hhhhhhhhhhhh......ee.hhh.eeeeeee.....eeeeeeee.hhhhh...hhhhhh.eeeeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhh..hhhhhhhhhhhh..eeee.......hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE RAB  PDB: A:15-183 UniProt: 15-215                                                                                                                                        PROSITE
           Transcript 1 (1) Exon 1.2b  PDB: A:15-55 UniProt: 1-55    --------------------------------------------------Exon 1.5b  PDB: A:106-146                Exon 1.6a  PDB: A:147-178       ----- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------Exon 1.4c  PDB: A:55-105 UniProt: 55-105           ------------------------------------------------------------------------1.7e   Transcript 1 (2)
                 1tu4 A  15 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPmYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFmETSAKTSmNVNEIFmAIAKKLPK 183
                                    24        34        44        54        64        74        84   |    94       104       114       124       134       144       154     | 164   |   174|        
                                                                                                    88-MSE                                                                 160-MSE 168-MSE  |        
                                                                                                                                                                                          175-MSE

Chain B from PDB  Type:PROTEIN  Length:162
 aligned with RAB5A_HUMAN | P20339 from UniProtKB/Swiss-Prot  Length:215

    Alignment length:165
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177     
          RAB5A_HUMAN    18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
               SCOP domains d1tu4b_ B: Rab5a                                                                                                                                                      SCOP domains
               CATH domains 1tu4B00 B:18-182 P-loop cont   aining nucleotide triphosphate hydrolases                                                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.....hhhhhhhhhh....---......eeeeeeeeee..eeeeeeeeee..hhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhh..hhhhhhhhhhhh..eeee.......hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE RAB  PDB: - UniProt: 15-215                                                                                                                                           PROSITE
           Transcript 1 (1) Exon 1.2b  PDB: B:18-55 (gaps)        --------------------------------------------------Exon 1.5b  PDB: B:106-146                Exon 1.6a  PDB: B:147-178       ---- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.4c  PDB: B:55-105 UniProt: 55-105           ------------------------------------------------------------------------1.7e  Transcript 1 (2)
                 1tu4 B  18 ICQFKLVLLGESAVGKSSLVLRFVKGQF---QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPmYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFmETSAKTSmNVNEIFmAIAKKLP 182
                                    27        37       | - |      57        67        77        87|       97       107       117       127       137       147       157  |    167|      177     
                                                      45  49                                     88-MSE                                                                 160-MSE 168-MSE  |       
                                                                                                                                                                                       175-MSE

Chain C from PDB  Type:PROTEIN  Length:169
 aligned with RAB5A_HUMAN | P20339 from UniProtKB/Swiss-Prot  Length:215

    Alignment length:169
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174         
          RAB5A_HUMAN    15 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 183
               SCOP domains d1tu4c_ C: Rab5a                                                                                                                                                          SCOP domains
               CATH domains 1tu4C00 C:15-183 P-loop containing nucleotide triphosphate hydrolases                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee.....hhhhhhhhhhhh.ee...ee.hhh.eeeeeee.....eeeeeeee.hhhhh...hhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhh..hhhhhhhhhhh...eeee.......hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE RAB  PDB: C:15-183 UniProt: 15-215                                                                                                                                        PROSITE
           Transcript 1 (1) Exon 1.2b  PDB: C:15-55 UniProt: 1-55    --------------------------------------------------Exon 1.5b  PDB: C:106-146                Exon 1.6a  PDB: C:147-178       ----- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------Exon 1.4c  PDB: C:55-105 UniProt: 55-105           ------------------------------------------------------------------------1.7e   Transcript 1 (2)
                 1tu4 C  15 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPmYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFmETSAKTSmNVNEIFmAIAKKLPK 183
                                    24        34        44        54        64        74        84   |    94       104       114       124       134       144       154     | 164   |   174|        
                                                                                                    88-MSE                                                                 160-MSE 168-MSE  |        
                                                                                                                                                                                          175-MSE

Chain D from PDB  Type:PROTEIN  Length:164
 aligned with RAB5A_HUMAN | P20339 from UniProtKB/Swiss-Prot  Length:215

    Alignment length:167
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       
          RAB5A_HUMAN    16 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
               SCOP domains d1tu4d_ D: Rab5a                                                                                                                                                        SCOP domains
               CATH domains 1tu4D00 D:16-182 P-loop containi   ng nucleotide triphosphate hydrolases                                                                                                CATH domains
           Pfam domains (1) ------Ras-1tu4D01 D:22-182                                                                                                                                              Pfam domains (1)
           Pfam domains (2) ------Ras-1tu4D02 D:22-182                                                                                                                                              Pfam domains (2)
           Pfam domains (3) ------Ras-1tu4D03 D:22-182                                                                                                                                              Pfam domains (3)
           Pfam domains (4) ------Ras-1tu4D04 D:22-182                                                                                                                                              Pfam domains (4)
         Sec.struct. author ..eeeeeeeeee....hhhhhhhhhh......---....eeeeeeeeee..eeeeeeeeee..hhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhh..hhhhhhhhhhhhh.eeee.......hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE RAB  PDB: - UniProt: 15-215                                                                                                                                             PROSITE
           Transcript 1 (1) Exon 1.2b  PDB: D:16-55 (gaps)          --------------------------------------------------Exon 1.5b  PDB: D:106-146                Exon 1.6a  PDB: D:147-178       ---- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------Exon 1.4c  PDB: D:55-105 UniProt: 55-105           ------------------------------------------------------------------------1.7e  Transcript 1 (2)
                 1tu4 D  16 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHE---STIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPmYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFmETSAKTSmNVNEIFmAIAKKLP 182
                                    25        35        45 |   |  55        65        75        85  |     95       105       115       125       135       145       155    |  165  |    175       
                                                          47  51                                   88-MSE                                                                 160-MSE 168-MSE  |       
                                                                                                                                                                                         175-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (1, 4)

Pfam Domains (1, 4)

Gene Ontology (47, 47)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (RAB5A_HUMAN | P20339)

molecular function
	GO:0019003	GDP binding	Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0003924	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.
	GO:0019001	guanyl nucleotide binding	Interacting selectively and non-covalently with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0007596	blood coagulation	The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
	GO:0045022	early endosome to late endosome transport	The directed movement of substances, in membrane-bounded vesicles, from the early sorting endosomes to the late sorting endosomes; transport occurs along microtubules and can be experimentally blocked with microtubule-depolymerizing drugs.
	GO:0006897	endocytosis	A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
	GO:0006909	phagocytosis	An endocytosis process that results in the engulfment of external particulate material by phagocytes. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles.
	GO:0045921	positive regulation of exocytosis	Any process that activates or increases the frequency, rate or extent of exocytosis.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:2000286	receptor internalization involved in canonical Wnt signaling pathway	A receptor internalization process that contributes to canonical Wnt signaling pathway.
	GO:2000785	regulation of autophagosome assembly	Any process that modulates the frequency, rate or extent of autophagosome assembly.
	GO:0030100	regulation of endocytosis	Any process that modulates the frequency, rate or extent of endocytosis.
	GO:0051036	regulation of endosome size	Any process that modulates the volume of an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis.
	GO:0051489	regulation of filopodium assembly	Any process that modulates the frequency, rate or extent of the assembly of a filopodium, a thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone.
	GO:2000300	regulation of synaptic vesicle exocytosis	Any process that modulates the frequency, rate or extent of synaptic vesicle exocytosis.
	GO:0007264	small GTPase mediated signal transduction	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
	GO:0036465	synaptic vesicle recycling	The trafficking of synaptic vesicles from the pre-synaptic membrane so the vesicle can dock and prime for another round of exocytosis and neurotransmitter release. Recycling occurs after synaptic vesicle exocytosis, and is necessary to replenish presynaptic vesicle pools, sustain transmitter release and preserve the structural integrity of the presynaptic membrane. Recycling can occur following transient fusion with the presynaptic membrane (kiss and run), or via endocytosis of presynaptic membrane.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0015629	actin cytoskeleton	The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
	GO:0030424	axon	The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
	GO:0043679	axon terminus	Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters. The axon terminus is considered to be the whole region of thickening and the terminal button is a specialized region of it.
	GO:0042995	cell projection	A prolongation or process extending from a cell, e.g. a flagellum or axon.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0098559	cytoplasmic side of early endosome membrane	The side (leaflet) of the early endosome membrane that faces the cytoplasm.
	GO:0031410	cytoplasmic vesicle	A vesicle found in the cytoplasm of a cell.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0030425	dendrite	A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
	GO:0005769	early endosome	A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
	GO:0031901	early endosome membrane	The lipid bilayer surrounding an early endosome.
	GO:0030139	endocytic vesicle	A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance. Endocytic vesicles fuse with early endosomes to deliver the cargo for further sorting.
	GO:0005768	endosome	A vacuole to which materials ingested by endocytosis are delivered.
	GO:0010008	endosome membrane	The lipid bilayer surrounding an endosome.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0042470	melanosome	A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0045121	membrane raft	Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions.
	GO:0043025	neuronal cell body	The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
	GO:0045335	phagocytic vesicle	A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
	GO:0030670	phagocytic vesicle membrane	The lipid bilayer surrounding a phagocytic vesicle.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0001726	ruffle	Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork.
	GO:0036477	somatodendritic compartment	The region of a neuron that includes the cell body (cell soma) and the dendrite, but excludes the axon.
	GO:0008021	synaptic vesicle	A secretory organelle, typically 50 nm in diameter, of presynaptic nerve terminals; accumulates in high concentrations of neurotransmitters and secretes these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane.
	GO:0043195	terminal bouton	Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters. The axon terminus is considered to be the whole region of thickening and the terminal bouton is a specialized region of it.

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Description

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Ligands, Modified Residues, Ions (4, 32)

Sites (16, 16)

SS Bonds (0, 0)

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Exons (5, 20)

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