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(-) Description

Title :  SOLUTION STRUCTURE OF THE FIBRIN BINDING FINGER DOMAIN OF TISSUE-TYPE PLASMINOGEN ACTIVATOR DETERMINED BY 1H NUCLEAR MAGNETIC RESONANCE
 
Authors :  A. K. Downing, P. C. Driscoll, T. S. Harvey, T. J. Dudgeon, B. O. Smith, M. Baron, I. D. Campbell
Date :  26 May 93  (Deposition) - 31 Jan 94  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
Keywords :  Plasminogen Activator (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. K. Downing, P. C. Driscoll, T. S. Harvey, T. J. Dudgeon, B. O. Smith, M. Baron, I. D. Campbell
Solution Structure Of The Fibrin Binding Finger Domain Of Tissue-Type Plasminogen Activator Determined By 1H Nuclear Magnetic Resonance.
J. Mol. Biol. V. 225 821 1992
PubMed-ID: 1602484  |  Reference-DOI: 10.1016/0022-2836(92)90403-7
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TISSUE-TYPE PLASMINOGEN ACTIVATOR
    ChainsA
    EngineeredYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  
NMR Structure 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1TPM)

(-) Sites  (0, 0)

(no "Site" information available for 1TPM)

(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:6 -A:36
2A:34 -A:43

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1TPM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1TPM)

(-) PROSITE Motifs  (3, 3)

NMR Structure (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FN1_2PS51091 Fibronectin type-I domain profile.TPA_HUMAN39-81  1A:4-46
2FN1_1PS01253 Fibronectin type-I domain signature.TPA_HUMAN41-78  1A:6-43
3EGF_3PS50026 EGF-like domain profile.TPA_HUMAN82-120  1A:47-50

(-) Exons   (3, 3)

NMR Structure (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002208091aENSE00002112956chr8:42065242-42065012231TPA_HUMAN-00--
1.5ENST000002208095ENSE00002181240chr8:42050729-4205063298TPA_HUMAN1-24240--
1.6ENST000002208096ENSE00001617965chr8:42048932-4204889043TPA_HUMAN25-39151A:1-44
1.7bENST000002208097bENSE00001727998chr8:42046589-42046452138TPA_HUMAN39-85471A:4-5047
1.8bENST000002208098bENSE00000692406chr8:42045534-42045424111TPA_HUMAN85-122381A:50-501
1.9dENST000002208099dENSE00001128022chr8:42045090-42044916175TPA_HUMAN122-180590--
1.9fENST000002208099fENSE00000692402chr8:42042690-4204259992TPA_HUMAN180-211320--
1.10aENST0000022080910aENSE00000692400chr8:42040408-42040237172TPA_HUMAN211-268580--
1.11ENST0000022080911ENSE00002184621chr8:42039540-4203945586TPA_HUMAN268-297300--
1.12bENST0000022080912bENSE00001674536chr8:42038203-42038008196TPA_HUMAN297-362660--
1.13bENST0000022080913bENSE00001605389chr8:42037896-42037760137TPA_HUMAN362-408470--
1.14aENST0000022080914aENSE00001793485chr8:42037584-42037444141TPA_HUMAN408-455480--
1.15ENST0000022080915ENSE00001758697chr8:42036581-42036415167TPA_HUMAN455-510560--
1.16eENST0000022080916eENSE00002116161chr8:42033669-42032751919TPA_HUMAN511-562520--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:50
 aligned with TPA_HUMAN | P00750 from UniProtKB/Swiss-Prot  Length:562

    Alignment length:50
                                    45        55        65        75        85
             TPA_HUMAN   36 SYQVICRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQCHSVPVKS 85
               SCOP domains d1tpma_ A: Tissue-type plasminogen activator, t-PA SCOP domains
               CATH domains 1tpmA00 A:1-50 Complement Module, domain 1         CATH domains
               Pfam domains -----fn1-1tpmA01 A:6-43                    ------- Pfam domains
         Sec.struct. author .....eee....eee....eeeee......eeeee......eeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---FN1_2  PDB: A:4-46 UniProt: 39-81          EGF_ PROSITE (1)
                PROSITE (2) -----FN1_1  PDB: A:6-43 UniProt: 41-78     ------- PROSITE (2)
           Transcript 1 (1) 1.6 ---------------------------------------------1 Transcript 1 (1)
           Transcript 1 (2) ---Exon 1.7b  PDB: A:4-50 UniProt: 39-85           Transcript 1 (2)
                  1tpm A  1 SYQVICRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQCHSVPVKS 50
                                    10        20        30        40        50

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure

(-) Gene Ontology  (24, 24)

NMR Structure(hide GO term definitions)
Chain A   (TPA_HUMAN | P00750)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0051219    phosphoprotein binding    Interacting selectively and non-covalently with a phosphorylated protein.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0006464    cellular protein modification process    The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
    GO:0042730    fibrinolysis    A process that solubilizes fibrin in the bloodstream of a multicellular organism, chiefly by the proteolytic action of plasmin.
    GO:0045861    negative regulation of proteolysis    Any process that stops, prevents, or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein.
    GO:0031639    plasminogen activation    The process in which inactive plasminogen is processed to active plasmin. This process includes cleavage at an internal Arg-Val site to form an N-terminal A-chain and C-terminal B-chain held together by a disulfide bond, and can include further proteolytic cleavage events to remove the preactivation peptide.
    GO:0048008    platelet-derived growth factor receptor signaling pathway    The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0001666    response to hypoxia    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
    GO:0014909    smooth muscle cell migration    The orderly movement of a smooth muscle cell from one site to another, often during the development of a multicellular organism.
cellular component
    GO:0045177    apical part of cell    The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0031012    extracellular matrix    A structure lying external to one or more cells, which provides structural support for cells or tissues.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0030141    secretory granule    A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell and upon stimulation, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        TPA_HUMAN | P007501a5h 1bda 1pk2 1pml 1rtf 1tpg 1tpk 1tpn 5brr

(-) Related Entries Specified in the PDB File

1tpn