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(-) Description

Title :  CRYSTAL STRUCTURAL ANALYSIS OF TOBACCO NECROSIS VIRUS (TNV) AT 5 ANGSTROMS RESOLUTION
 
Authors :  T. Tsukihara
Date :  11 Mar 94  (Deposition) - 20 Dec 94  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  5.00
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (60x)
Keywords :  Virus, Icosahedral Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Bando, Y. Morimoto, T. Sato, T. Tsukihara
Crystal Structural Analysis Of Tobacco Necrosis Virus At 5 A Resolution.
Acta Crystallogr. , Sect. D V. 50 878 1994
PubMed-ID: 15299356  |  Reference-DOI: 10.1107/S0907444994002787
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TOBACCO NECROSIS VIRUS (SUBUNIT VP1)
    ChainsA, B
    OrganBEAN
    Organism ScientificUNIDENTIFIED TOBACCO NECROSIS VIRUS
    Organism Taxid12054
 
Molecule 2 - TOBACCO NECROSIS VIRUS (SUBUNIT VP3)
    ChainsC
    OrganBEAN
    Organism ScientificUNIDENTIFIED TOBACCO NECROSIS VIRUS
    Organism Taxid12054

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ABC
Biological Unit 1 (60x)ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 582)

Asymmetric Unit (1, 582)
No.NameCountTypeFull Name
1UNK582Mod. Amino Acid
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 1TNV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1TNV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1TNV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1TNV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1TNV)

(-) Exons   (0, 0)

(no "Exon" information available for 1TNV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:186
                                                                                                                                                                                                                          
               SCOP domains d1tnva_ A: TNV coat protein                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
     Sec.struct. author (1) eeeeeeeeeeeeeeee.eeeeeeeee.......hhhhhhhhhh----------------...eeeeeeeeeee........hhhhhhhh.eeeeee....hhhhhhhhh........eeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhh----------..eeeeeeeeeeeeeeeee....... Sec.struct. author (1)
     Sec.struct. author (2) ------------------------------------------eeeeeeeeeeeeeeeee------------------------------------------------------------------------------------------eeeeeeeeeee-------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
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Chain B from PDB  Type:PROTEIN  Length:186
                                                                                                                                                                                                                          
               SCOP domains d1tnvb_ B: TNV coat protein                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
     Sec.struct. author (1) eeeeeeeeeeeeeeee.eeeeeeeee.......hhhhhhhhhh----------------...eeeeeeeeeee........hhhhhhhh.eeeeee....hhhhhhhhh........eeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhh----------..eeeeeeeeeeeeeeeee....... Sec.struct. author (1)
     Sec.struct. author (2) ------------------------------------------eeeeeeeeeeeeeeeee------------------------------------------------------------------------------------------eeeeeeeeeee-------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1tnv B  90 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 275
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Chain C from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains d1tnvc_ C: TNV coat protein                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee.eeeeeeeee................eeeeeeeeeeeeeeeee...eeeeeeeeeee.................eeeeee.....................eeeeeeeeeeeeeeee................eeeeeeeeeee..eeeeeeeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1tnv C  66 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 275
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   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1TNV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1TNV)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1TNV)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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