1T7S - JenaLib

Title :   STRUCTURAL GENOMICS OF CAENORHABDITIS ELEGANS: STRUCTURE OF BAG-1 PROTEIN

Authors :   J. Symersky, Y. Zhang, N. Schormann, S. Li, R. Bunzel, P. Pruett, C. - H. Luan, M. Luo, Southeast Collaboratory For Structural Genomics (Secsg)

Date :   10 May 04 (Deposition) - 18 May 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A  (2x)
Biol. Unit 4: B  (2x)
Biol. Unit 5: B  (4x)
Biol. Unit 6: A  (4x)
Biol. Unit 7: B  (2x)

Keywords :   Structural Genomics, Bag-1 Cochaperone, Psi, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Secsg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Symersky, Y. Zhang, N. Schormann, S. Li, R. Bunzel, P. Pruett, C. H. Luan, M. Luo
Structural Genomics Of Caenorhabditis Elegans: Structure Of The Bag Domain.
Acta Crystallogr. , Sect. D V. 60 1606 2004
PubMed-ID: 15333932 | Reference-DOI: 10.1107/S0907444904017603
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 10)

Asymmetric Unit (1, 10)

No.	Name	Count	Type	Full Name
1	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 5)

No.	Name	Count	Type	Full Name
1	MSE	5	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 5)

No.	Name	Count	Type	Full Name
1	MSE	5	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (1, 10)

No.	Name	Count	Type	Full Name
1	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 4 (1, 10)

No.	Name	Count	Type	Full Name
1	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 5 (1, 20)

No.	Name	Count	Type	Full Name
1	MSE	20	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 6 (1, 20)

No.	Name	Count	Type	Full Name
1	MSE	20	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 7 (1, 10)

No.	Name	Count	Type	Full Name
1	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BAG	PS51035	BAG domain profile.	BAG1_CAEEL	108-194	2	A:108-194 B:108-194

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BAG	PS51035	BAG domain profile.	BAG1_CAEEL	108-194	1	A:108-194 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BAG	PS51035	BAG domain profile.	BAG1_CAEEL	108-194	1	- B:108-194

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BAG	PS51035	BAG domain profile.	BAG1_CAEEL	108-194	2	A:108-194 -

Biological Unit 4 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BAG	PS51035	BAG domain profile.	BAG1_CAEEL	108-194	2	- B:108-194

Biological Unit 5 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BAG	PS51035	BAG domain profile.	BAG1_CAEEL	108-194	4	- B:108-194

Biological Unit 6 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BAG	PS51035	BAG domain profile.	BAG1_CAEEL	108-194	4	A:108-194 -

Biological Unit 7 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BAG	PS51035	BAG domain profile.	BAG1_CAEEL	108-194	2	- B:108-194

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:129
 aligned with BAG1_CAEEL | O44739 from UniProtKB/Swiss-Prot  Length:210

    Alignment length:129
                                    83        93       103       113       123       133       143       153       163       173       183       193         
           BAG1_CAEEL    74 DKIIVMGGKNALVDDAGFKMLMQYEKHNLSNLQKAYDLNLRDVADLERGFLEKPKQVEMGKKLEKKVKYFNEEAERHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRLQEYQS 202
               SCOP domains d1t7sa_ A: BAG-family molecular chaperon regulator-1, BAG1                                                                        SCOP domains
               CATH domains 1t7sA00 A:74-202  [code=1.20.58.120, no name defined]                                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------BAG  PDB: A:108-194 UniProt: 108-194                                                   -------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t7s A  74 DKIIVmGGKNALVDDAGFKmLmQYEKHNLSNLQKAYDLNLRDVADLERGFLEKPKQVEmGKKLEKKVKYFNEEAERHLETLDGmNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRLQEYQS 202
                                 |  83        93 |     103       113       123       133       143       153   |   163       173       183       193         
                                 |            93-MSE                                132-MSE                  157-MSE                                         
                                79-MSE          95-MSE

Chain B from PDB  Type:PROTEIN  Length:129
 aligned with BAG1_CAEEL | O44739 from UniProtKB/Swiss-Prot  Length:210

    Alignment length:129
                                    83        93       103       113       123       133       143       153       163       173       183       193         
           BAG1_CAEEL    74 DKIIVMGGKNALVDDAGFKMLMQYEKHNLSNLQKAYDLNLRDVADLERGFLEKPKQVEMGKKLEKKVKYFNEEAERHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRLQEYQS 202
               SCOP domains d1t7sb_ B: BAG-family molecular chaperon regulator-1, BAG1                                                                        SCOP domains
               CATH domains 1t7sB00 B:74-202  [code=1.20.58.120, no name defined]                                                                             CATH domains
           Pfam domains (1) ubiquitin-----------------------------BAG-1t7sB03 B:112-194                                                              -------- Pfam domains (1)
           Pfam domains (2) ubiquitin-----------------------------BAG-1t7sB04 B:112-194                                                              -------- Pfam domains (2)
         Sec.struct. author ...eee....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------BAG  PDB: B:108-194 UniProt: 108-194                                                   -------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t7s B  74 DKIIVmGGKNALVDDAGFKmLmQYEKHNLSNLQKAYDLNLRDVADLERGFLEKPKQVEmGKKLEKKVKYFNEEAERHLETLDGmNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRLQEYQS 202
                                 |  83        93 |     103       113       123       133       143       153   |   163       173       183       193         
                                79-MSE        93-MSE                                132-MSE                  157-MSE                                         
                                                95-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (2, 4)

Gene Ontology (4, 4)

Asymmetric Unit(hide GO term definitions)

Chain A,B (BAG1_CAEEL | O44739)

molecular function
	GO:0051087	chaperone binding	Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0016049	cell growth	The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

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