1T3U - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   UNKNOWN CONSERVED BACTERIAL PROTEIN FROM PSEUDOMONAS AERUGINOSA PAO1

Authors :   K. R. Rajashankar, R. Kneiwel, V. Solorzano, C. D. Lima, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)

Date :   27 Apr 04 (Deposition) - 04 May 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   T1445, Nysgxrc, Unknown Orf, Cog3027, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. R. Rajashankar, R. Kneiwel, V. Solorzano, C. D. Lima
Structure Of A Conserved Hypothetical Protein Pseudomonas Aeruginosa Pa01
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	T7
	Expression System Strain	:	B834 DE3
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PA5227
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA PAO1
	Organism Taxid	:	208964
	Strain	:	PA01

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 8)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 1T3U)

(no "SS Bond" information available for 1T3U)

(no "Cis Peptide Bond" information available for 1T3U)

(no "SAP(SNP)/Variant" information available for 1T3U)

(no "PROSITE Motif" information available for 1T3U)

(no "Exon" information available for 1T3U)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:92
 aligned with ZAPA_PSEAE | Q9HTW3 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:92
                                    15        25        35        45        55        65        75        85        95  
            ZAPA_PSEAE    6 TLTVQILDKEYCINCPDDERANLESAARYLDGKMREIRSSGKVIGADRVAVMAALNITHDLLHRKERLDQESSSTRERVRELLDRVDRALAN 97
               SCOP domains d1t3ua_ A: ZapA homologue PA5227                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  1t3u A  6 TLTVQILDKEYCINCPDDERANLESAARYLDGKmREIRSSGKVIGADRVAVmAALNITHDLLHRKERLDQESSSTRERVRELLDRVDRALAN 97
                                    15        25        35   |    45        55 |      65        75        85        95  
                                                            39-MSE            57-MSE

Chain B from PDB  Type:PROTEIN  Length:93
 aligned with ZAPA_PSEAE | Q9HTW3 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:93
                                    13        23        33        43        53        63        73        83        93   
            ZAPA_PSEAE    4 SNTLTVQILDKEYCINCPDDERANLESAARYLDGKMREIRSSGKVIGADRVAVMAALNITHDLLHRKERLDQESSSTRERVRELLDRVDRALA 96
               SCOP domains d1t3ub_ B: ZapA homologue PA5227                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                  1t3u B  4 SNTLTVQILDKEYCINCPDDERANLESAARYLDGKmREIRSSGKVIGADRVAVmAALNITHDLLHRKERLDQESSSTRERVRELLDRVDRALA 96
                                    13        23        33     |  43        53   |    63        73        83        93   
                                                              39-MSE            57-MSE

Chain C from PDB  Type:PROTEIN  Length:92
 aligned with ZAPA_PSEAE | Q9HTW3 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:92
                                    15        25        35        45        55        65        75        85        95  
            ZAPA_PSEAE    6 TLTVQILDKEYCINCPDDERANLESAARYLDGKMREIRSSGKVIGADRVAVMAALNITHDLLHRKERLDQESSSTRERVRELLDRVDRALAN 97
               SCOP domains d1t3uc_ C: ZapA homologue PA5227                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeee..hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  1t3u C  6 TLTVQILDKEYCINCPDDERANLESAARYLDGKmREIRSSGKVIGADRVAVmAALNITHDLLHRKERLDQESSSTRERVRELLDRVDRALAN 97
                                    15        25        35   |    45        55 |      65        75        85        95  
                                                            39-MSE            57-MSE

Chain D from PDB  Type:PROTEIN  Length:91
 aligned with ZAPA_PSEAE | Q9HTW3 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:91
                                    13        23        33        43        53        63        73        83        93 
            ZAPA_PSEAE    4 SNTLTVQILDKEYCINCPDDERANLESAARYLDGKMREIRSSGKVIGADRVAVMAALNITHDLLHRKERLDQESSSTRERVRELLDRVDRA 94
               SCOP domains d1t3ud_ D: ZapA homologue PA5227                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --ZapA-1t3uD01 D:6-92                                                                    -- Pfam domains (1)
           Pfam domains (2) --ZapA-1t3uD02 D:6-92                                                                    -- Pfam domains (2)
           Pfam domains (3) --ZapA-1t3uD03 D:6-92                                                                    -- Pfam domains (3)
           Pfam domains (4) --ZapA-1t3uD04 D:6-92                                                                    -- Pfam domains (4)
         Sec.struct. author ...eeeee..eeeee..hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  1t3u D  4 SNTLTVQILDKEYCINCPDDERANLESAARYLDGKmREIRSSGKVIGADRVAVmAALNITHDLLHRKERLDQESSSTRERVRELLDRVDRA 94
                                    13        23        33     |  43        53   |    63        73        83        93 
                                                              39-MSE            57-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Cell division protein ZapA-like (2)

Superfamily: Cell division protein ZapA-like (2)

Family: Cell division protein ZapA-like (2)

Protein domain: ZapA homologue PA5227 (2)

Pseudomonas aeruginosa [TaxId: 287] (2)

1a	d1t3ua_	A:
1b	d1t3ub_	B:
1c	d1t3uc_	C:
1d	d1t3ud_	D:

(no "CATH Domain" information available for 1T3U)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: ZapA] (2)

Family: ZapA (2)

Pseudomonas aeruginosa (2)

1a	ZapA-1t3uD01	D:6-92
1b	ZapA-1t3uD02	D:6-92
1c	ZapA-1t3uD03	D:6-92
1d	ZapA-1t3uD04	D:6-92

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (ZAPA_PSEAE | Q9HTW3)

biological process
	GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
	GO:0051301	cell division	The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 8)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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