1SYR - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Biological Unit 7 (Jmol Viewer)

Title :   INITIAL STRUCTURAL ANALYSIS OF PLASMODIUM FALCIPARUM THIOREDOXIN

Authors :   M. A. Robien, W. G. J. Hol, Structural Genomics Of Pathogenic Proto Consortium (Sgpp)

Date :   01 Apr 04 (Deposition) - 13 Apr 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.95

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: G,H  (1x)
Biol. Unit 5: I,J  (1x)
Biol. Unit 6: K  (2x)
Biol. Unit 7: L  (2x)

Keywords :   Sgpp, Structural Genomics, Psi, Protein Structure Initiative, Structural Genomics Of Pathogenic Protozoa Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. A. Robien, W. G. J. Hol, Structural Genomics Of Pathogenic Protozoa
Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin
To Be Published
PubMed: search

Molecule 1 - THIOREDOXIN
	Chains	:	A, B, C, D, E, F, G, H, I, J, K, L
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET14B
	Expression System Strain	:	BL21STAR/DE3
	Expression System Taxid	:	562
	Expression System Vector Type	:	T7 SYSTEM
	Gene	:	PF14_0545
	Organism Scientific	:	PLASMODIUM FALCIPARUM
	Organism Taxid	:	36329
	Strain	:	3D7

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F
Biological Unit 4 (1x)	:							G	H
Biological Unit 5 (1x)	:									I	J
Biological Unit 6 (2x)	:											K
Biological Unit 7 (2x)	:												L

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1SYR)

(no "Site" information available for 1SYR)

Asymmetric Unit

No.	Residues
1	A:38	-	A:41
2	B:38	-	B:41
3	C:38	-	C:41
4	D:38	-	D:41
5	E:38	-	E:41
6	F:38	-	F:41
7	G:38	-	G:41
8	H:38	-	H:41
9	I:38	-	I:41
10	J:38	-	J:41
11	K:38	-	K:41
12	L:38	-	L:41

Asymmetric Unit

No.	Residues
1	Met A:80	-	Pro A:81
2	Met B:80	-	Pro B:81
3	Met C:80	-	Pro C:81
4	Met D:80	-	Pro D:81
5	Met E:80	-	Pro E:81
6	Met F:80	-	Pro F:81
7	Met G:80	-	Pro G:81
8	Met H:80	-	Pro H:81
9	Met I:80	-	Pro I:81
10	Met J:80	-	Pro J:81
11	Met K:80	-	Pro K:81
12	Met L:80	-	Pro L:81

(no "SAP(SNP)/Variant" information available for 1SYR)

Asymmetric Unit (2, 15)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOREDOXIN_2	PS51352	Thioredoxin domain profile.	THIO_PLAF7	1-104	3	A:9-111 C:9-111 H:9-111
2	THIOREDOXIN_1	PS00194	Thioredoxin family active site.	THIO_PLAF7	22-40	12	A:30-48 B:30-48 C:30-48 D:30-48 E:30-48 F:30-48 G:30-48 H:30-48 I:30-48 J:30-48 K:30-48 L:30-48

Biological Unit 1 (2, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOREDOXIN_2	PS51352	Thioredoxin domain profile.	THIO_PLAF7	1-104	1	A:9-111 - -
2	THIOREDOXIN_1	PS00194	Thioredoxin family active site.	THIO_PLAF7	22-40	2	A:30-48 B:30-48 - - - - - - - - - -

Biological Unit 2 (2, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOREDOXIN_2	PS51352	Thioredoxin domain profile.	THIO_PLAF7	1-104	1	- C:9-111 -
2	THIOREDOXIN_1	PS00194	Thioredoxin family active site.	THIO_PLAF7	22-40	2	- - C:30-48 D:30-48 - - - - - - - -

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOREDOXIN_2	PS51352	Thioredoxin domain profile.	THIO_PLAF7	1-104	0	- - -
2	THIOREDOXIN_1	PS00194	Thioredoxin family active site.	THIO_PLAF7	22-40	2	- - - - E:30-48 F:30-48 - - - - - -

Biological Unit 4 (2, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOREDOXIN_2	PS51352	Thioredoxin domain profile.	THIO_PLAF7	1-104	1	- - H:9-111
2	THIOREDOXIN_1	PS00194	Thioredoxin family active site.	THIO_PLAF7	22-40	2	- - - - - - G:30-48 H:30-48 - - - -

Biological Unit 5 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOREDOXIN_2	PS51352	Thioredoxin domain profile.	THIO_PLAF7	1-104	0	- - -
2	THIOREDOXIN_1	PS00194	Thioredoxin family active site.	THIO_PLAF7	22-40	2	- - - - - - - - I:30-48 J:30-48 - -

Biological Unit 6 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOREDOXIN_2	PS51352	Thioredoxin domain profile.	THIO_PLAF7	1-104	0	- - -
2	THIOREDOXIN_1	PS00194	Thioredoxin family active site.	THIO_PLAF7	22-40	2	- - - - - - - - - - K:30-48 -

Biological Unit 7 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOREDOXIN_2	PS51352	Thioredoxin domain profile.	THIO_PLAF7	1-104	0	- - -
2	THIOREDOXIN_1	PS00194	Thioredoxin family active site.	THIO_PLAF7	22-40	2	- - - - - - - - - - - L:30-48

(no "Exon" information available for 1SYR)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:103
 aligned with THIO_PLAF7 | Q7KQL8 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:103
                                    10        20        30        40        50        60        70        80        90       100   
           THIO_PLAF7     1 MVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103
               SCOP domains d1syra_ A: Thioredoxin                                                                                  SCOP domains
               CATH domains 1syrA00 A:9-111 Glutaredoxin                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh......eeeeee..eeeeeee..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) THIOREDOXIN_2  PDB: A:9-111 UniProt: 1-104                                                              PROSITE (1)
                PROSITE (2) ---------------------THIOREDOXIN_1      --------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1syr A   9 MVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111
                                    18        28        38        48        58        68        78        88        98       108

Chain B from PDB  Type:PROTEIN  Length:102
 aligned with THIO_PLAF7 | Q7KQL8 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:102
                                    11        21        31        41        51        61        71        81        91       101  
           THIO_PLAF7     2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103
               SCOP domains d1syrb_ B: Thioredoxin                                                                                 SCOP domains
               CATH domains 1syrB00 B:10-111 Glutaredoxin                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee..hhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhh.....eeeeee..eeeeeee..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) THIOREDOXIN_2  PDB: - UniProt: 1-104                                                                   PROSITE (1)
                PROSITE (2) --------------------THIOREDOXIN_1      --------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1syr B  10 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111
                                    19        29        39        49        59        69        79        89        99       109

Chain C from PDB  Type:PROTEIN  Length:103
 aligned with THIO_PLAF7 | Q7KQL8 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:103
                                    10        20        30        40        50        60        70        80        90       100   
           THIO_PLAF7     1 MVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103
               SCOP domains d1syrc_ C: Thioredoxin                                                                                  SCOP domains
               CATH domains 1syrC00 C:9-111 Glutaredoxin                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh......eeeeee..eeeeeee..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) THIOREDOXIN_2  PDB: C:9-111 UniProt: 1-104                                                              PROSITE (1)
                PROSITE (2) ---------------------THIOREDOXIN_1      --------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1syr C   9 MVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111
                                    18        28        38        48        58        68        78        88        98       108

Chain D from PDB  Type:PROTEIN  Length:102
 aligned with THIO_PLAF7 | Q7KQL8 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:102
                                    11        21        31        41        51        61        71        81        91       101  
           THIO_PLAF7     2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103
               SCOP domains d1syrd_ D: Thioredoxin                                                                                 SCOP domains
               CATH domains 1syrD00 D:10-111 Glutaredoxin                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh......eeeeee..eeeeeee..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) THIOREDOXIN_2  PDB: - UniProt: 1-104                                                                   PROSITE (1)
                PROSITE (2) --------------------THIOREDOXIN_1      --------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1syr D  10 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111
                                    19        29        39        49        59        69        79        89        99       109

Chain E from PDB  Type:PROTEIN  Length:102
 aligned with THIO_PLAF7 | Q7KQL8 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:102
                                    11        21        31        41        51        61        71        81        91       101  
           THIO_PLAF7     2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103
               SCOP domains d1syre_ E: Thioredoxin                                                                                 SCOP domains
               CATH domains 1syrE00 E:10-111 Glutaredoxin                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee..hhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh......eeeeee..eeeeeee..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) THIOREDOXIN_2  PDB: - UniProt: 1-104                                                                   PROSITE (1)
                PROSITE (2) --------------------THIOREDOXIN_1      --------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1syr E  10 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111
                                    19        29        39        49        59        69        79        89        99       109

Chain F from PDB  Type:PROTEIN  Length:102
 aligned with THIO_PLAF7 | Q7KQL8 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:102
                                    11        21        31        41        51        61        71        81        91       101  
           THIO_PLAF7     2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103
               SCOP domains d1syrf_ F: Thioredoxin                                                                                 SCOP domains
               CATH domains 1syrF00 F:10-111 Glutaredoxin                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh......eeeeee..eeeeeee..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) THIOREDOXIN_2  PDB: - UniProt: 1-104                                                                   PROSITE (1)
                PROSITE (2) --------------------THIOREDOXIN_1      --------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1syr F  10 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111
                                    19        29        39        49        59        69        79        89        99       109

Chain G from PDB  Type:PROTEIN  Length:102
 aligned with THIO_PLAF7 | Q7KQL8 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:102
                                    11        21        31        41        51        61        71        81        91       101  
           THIO_PLAF7     2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103
               SCOP domains d1syrg_ G: Thioredoxin                                                                                 SCOP domains
               CATH domains 1syrG00 G:10-111 Glutaredoxin                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh......eeeeee..eeeeeee..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) THIOREDOXIN_2  PDB: - UniProt: 1-104                                                                   PROSITE (1)
                PROSITE (2) --------------------THIOREDOXIN_1      --------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1syr G  10 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111
                                    19        29        39        49        59        69        79        89        99       109

Chain H from PDB  Type:PROTEIN  Length:98
 aligned with THIO_PLAF7 | Q7KQL8 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:103
                                    10        20        30        40        50        60        70        80        90       100   
           THIO_PLAF7     1 MVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103
               SCOP domains d1syrh_ H: Thio     redoxin                                                                             SCOP domains
               CATH domains 1syrH00 H:9-111      Glutaredoxin                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhh-----.eeeee...hhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhh......eeeeee..eeeeeee..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) THIOREDOXIN_2  PDB: H:9-111 UniProt: 1-104                                                              PROSITE (1)
                PROSITE (2) ---------------------THIOREDOXIN_1      --------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1syr H   9 MVKIVTSQAEFDSII-----VIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111
                                    18    |    -|       38        48        58        68        78        88        98       108   
                                         23    29

Chain I from PDB  Type:PROTEIN  Length:102
 aligned with THIO_PLAF7 | Q7KQL8 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:102
                                    11        21        31        41        51        61        71        81        91       101  
           THIO_PLAF7     2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103
               SCOP domains d1syri_ I: Thioredoxin                                                                                 SCOP domains
               CATH domains 1syrI00 I:10-111 Glutaredoxin                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh......eeeeee..eeeeeee..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) THIOREDOXIN_2  PDB: - UniProt: 1-104                                                                   PROSITE (1)
                PROSITE (2) --------------------THIOREDOXIN_1      --------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1syr I  10 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111
                                    19        29        39        49        59        69        79        89        99       109

Chain J from PDB  Type:PROTEIN  Length:102
 aligned with THIO_PLAF7 | Q7KQL8 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:102
                                    11        21        31        41        51        61        71        81        91       101  
           THIO_PLAF7     2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103
               SCOP domains d1syrj_ J: Thioredoxin                                                                                 SCOP domains
               CATH domains 1syrJ00 J:10-111 Glutaredoxin                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee.hhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh......eeeeee..eeeeeee..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) THIOREDOXIN_2  PDB: - UniProt: 1-104                                                                   PROSITE (1)
                PROSITE (2) --------------------THIOREDOXIN_1      --------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1syr J  10 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111
                                    19        29        39        49        59        69        79        89        99       109

Chain K from PDB  Type:PROTEIN  Length:102
 aligned with THIO_PLAF7 | Q7KQL8 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:102
                                    11        21        31        41        51        61        71        81        91       101  
           THIO_PLAF7     2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103
               SCOP domains d1syrk_ K: Thioredoxin                                                                                 SCOP domains
               CATH domains 1syrK00 K:10-111 Glutaredoxin                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh......eeeeee..eeeeeee..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) THIOREDOXIN_2  PDB: - UniProt: 1-104                                                                   PROSITE (1)
                PROSITE (2) --------------------THIOREDOXIN_1      --------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1syr K  10 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111
                                    19        29        39        49        59        69        79        89        99       109

Chain L from PDB  Type:PROTEIN  Length:102
 aligned with THIO_PLAF7 | Q7KQL8 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:102
                                    11        21        31        41        51        61        71        81        91       101  
           THIO_PLAF7     2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103
               SCOP domains d1syrl_ L: Thioredoxin                                                                                 SCOP domains
               CATH domains 1syrL00 L:10-111 Glutaredoxin                                                                          CATH domains
           Pfam domains (1) Thioredoxin-1syrL01 L:10-110                                                                         - Pfam domains (1)
           Pfam domains (2) Thioredoxin-1syrL02 L:10-110                                                                         - Pfam domains (2)
           Pfam domains (3) Thioredoxin-1syrL03 L:10-110                                                                         - Pfam domains (3)
           Pfam domains (4) Thioredoxin-1syrL04 L:10-110                                                                         - Pfam domains (4)
           Pfam domains (5) Thioredoxin-1syrL05 L:10-110                                                                         - Pfam domains (5)
           Pfam domains (6) Thioredoxin-1syrL06 L:10-110                                                                         - Pfam domains (6)
           Pfam domains (7) Thioredoxin-1syrL07 L:10-110                                                                         - Pfam domains (7)
           Pfam domains (8) Thioredoxin-1syrL08 L:10-110                                                                         - Pfam domains (8)
           Pfam domains (9) Thioredoxin-1syrL09 L:10-110                                                                         - Pfam domains (9)
          Pfam domains (10) Thioredoxin-1syrL10 L:10-110                                                                         - Pfam domains (10)
          Pfam domains (11) Thioredoxin-1syrL11 L:10-110                                                                         - Pfam domains (11)
          Pfam domains (12) Thioredoxin-1syrL12 L:10-110                                                                         - Pfam domains (12)
         Sec.struct. author .eee.hhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh......eeeeee..eeeeeee..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) THIOREDOXIN_2  PDB: - UniProt: 1-104                                                                   PROSITE (1)
                PROSITE (2) --------------------THIOREDOXIN_1      --------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1syr L  10 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111
                                    19        29        39        49        59        69        79        89        99       109

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Thioredoxin fold (994)

Superfamily: Thioredoxin-like (992)

Family: Thioltransferase (167)

Protein domain: Thioredoxin (106)

Malaria parasite (Plasmodium falciparum) [TaxId: 5833] (1)

1a	d1syra_	A:
1b	d1syrb_	B:
1c	d1syrk_	K:
1d	d1syrl_	L:
1e	d1syrc_	C:
1f	d1syrd_	D:
1g	d1syre_	E:
1h	d1syrf_	F:
1i	d1syrg_	G:
1j	d1syrh_	H:
1k	d1syri_	I:
1l	d1syrj_	J:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Glutaredoxin (620)

Homologous Superfamily: Glutaredoxin (617)

Plasmodium falciparum 3d7. Organism_taxid: 36329. Strain: 3d7. (1)

1a	1syrA00	A:9-111
1b	1syrC00	C:9-111
1c	1syrL00	L:10-111
1d	1syrH00	H:9-111
1e	1syrB00	B:10-111
1f	1syrD00	D:10-111
1g	1syrE00	E:10-111
1h	1syrF00	F:10-111
1i	1syrG00	G:10-111
1j	1syrI00	I:10-111
1k	1syrJ00	J:10-111
1l	1syrK00	K:10-111

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Thioredoxin (367)

Family: Thioredoxin (82)

Plasmodium falciparum (isolate 3D7) (1)

1a	Thioredoxin-1syrL01	L:10-110
1b	Thioredoxin-1syrL02	L:10-110
1c	Thioredoxin-1syrL03	L:10-110
1d	Thioredoxin-1syrL04	L:10-110
1e	Thioredoxin-1syrL05	L:10-110
1f	Thioredoxin-1syrL06	L:10-110
1g	Thioredoxin-1syrL07	L:10-110
1h	Thioredoxin-1syrL08	L:10-110
1i	Thioredoxin-1syrL09	L:10-110
1j	Thioredoxin-1syrL10	L:10-110
1k	Thioredoxin-1syrL11	L:10-110
1l	Thioredoxin-1syrL12	L:10-110

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J,K,L (THIO_PLAF7 | Q7KQL8)

molecular function
	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces disulfide.
	GO:0015035	protein disulfide oxidoreductase activity	Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds.
biological process
	GO:0045454	cell redox homeostasis	Any process that maintains the redox environment of a cell or compartment within a cell.
	GO:0034599	cellular response to oxidative stress	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
	GO:0006662	glycerol ether metabolic process	The chemical reactions and pathways involving glycerol ethers, any anhydride formed between two organic hydroxy compounds, one of which is glycerol.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
	GO:0000103	sulfate assimilation	The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1syr)

	Sites
(no "Sites" information available for 1syr)

	Cis Peptide Bonds
		Met A:80 - Pro A:81	[ RasMol ]
		Met B:80 - Pro B:81	[ RasMol ]
		Met C:80 - Pro C:81	[ RasMol ]
		Met D:80 - Pro D:81	[ RasMol ]
		Met E:80 - Pro E:81	[ RasMol ]
		Met F:80 - Pro F:81	[ RasMol ]
		Met G:80 - Pro G:81	[ RasMol ]
		Met H:80 - Pro H:81	[ RasMol ]
		Met I:80 - Pro I:81	[ RasMol ]
		Met J:80 - Pro J:81	[ RasMol ]
		Met K:80 - Pro K:81	[ RasMol ]
		Met L:80 - Pro L:81	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]
		Biological Unit 5	[ Jena3D ]
		Biological Unit 6	[ Jena3D ]
		Biological Unit 7	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format \| Biol. Unit 5 PNG format \| Biol. Unit 6 PNG format \| Biol. Unit 7 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1syr
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	THIO_PLAF7 \| Q7KQL8
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	THIO_PLAF7 \| Q7KQL8
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	THIO_PLAF7 \| Q7KQL8	:	2mmn 2mmo 4j56 4j57

(no "Related Entries Specified in the PDB File" available for 1SYR)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (12, 12)

Cis Peptide Bonds (12, 12)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 15)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 12)

CATH Domains (1, 12)

Pfam Domains (1, 12)

Gene Ontology (9, 9)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File