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(-) Description

Title :  CRYSTAL STRUCTURE OF THE AZOTOBACTER VINELANDII BACTERIOFERRITIN AT 2.6 A RESOLUTION
 
Authors :  H. L. Liu, J. F. Huang, R. C. Bi
Date :  14 Mar 04  (Deposition) - 05 Apr 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D,E,F,G,H  (3x)
Keywords :  Bacterioferritin, Active As 24-Mer, Four-Helix Bundle, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. L. Liu, H. N. Zhou, W. M. Xing, J. F. Zhao, S. X. Li, J. F. Huang, R. C. Bi
2. 6 A Resolution Crystal Structure Of The Bacterioferritin From Azotobacter Vinelandii
Febs Lett. V. 573 93 2004
PubMed-ID: 15327981  |  Reference-DOI: 10.1016/J.FEBSLET.2004.07.054

(-) Compounds

Molecule 1 - BACTERIOFERRITIN
    Chains: A, B, C, D, E, F, G, H
    Organism Scientific: AZOTOBACTER VINELANDII
    Organism Taxid: 354
    Strain: UW3
    Synonym: BFR, CYTOCHROME B-557.5

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (3x): ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 32)

Asymmetric Unit (4, 32)
No.NameCountTypeFull Name
1BA2Ligand/IonBARIUM ION
2FE216Ligand/IonFE (II) ION
3HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4MG10Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 60)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2FE248Ligand/IonFE (II) ION
3HEM12Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:18 , GLU A:51 , HIS A:54 , GLU A:127BINDING SITE FOR RESIDUE FE2 A 202
02AC2SOFTWAREGLU B:18 , GLU B:51 , HIS B:54 , GLU B:127BINDING SITE FOR RESIDUE FE2 B 202
03AC3SOFTWAREGLU C:18 , GLU C:51 , HIS C:54 , ILE C:123 , GLU C:127BINDING SITE FOR RESIDUE FE2 C 202
04AC4SOFTWAREGLU D:18 , GLU D:51 , HIS D:54 , GLU D:127BINDING SITE FOR RESIDUE FE2 D 202
05AC5SOFTWAREGLU E:18 , GLU E:51 , HIS E:54 , GLU E:127BINDING SITE FOR RESIDUE FE2 E 202
06AC6SOFTWAREGLU F:18 , GLU F:51 , HIS F:54 , GLU F:127BINDING SITE FOR RESIDUE FE2 F 202
07AC7SOFTWAREGLU G:18 , GLU G:51 , HIS G:54 , GLU G:127BINDING SITE FOR RESIDUE FE2 G 202
08AC8SOFTWAREGLU H:18 , GLU H:51 , HIS H:54 , GLU H:127BINDING SITE FOR RESIDUE FE2 H 202
09AC9SOFTWAREGLU A:51 , GLU A:94 , GLU A:127 , HIS A:130 , HOH A:421BINDING SITE FOR RESIDUE FE2 A 201
10BC1SOFTWAREGLU B:51 , GLU B:94 , GLU B:127 , HOH B:1203 , HOH B:1204BINDING SITE FOR RESIDUE FE2 B 201
11BC2SOFTWAREGLU C:51 , GLU C:94 , GLU C:127 , HIS C:130BINDING SITE FOR RESIDUE FE2 C 201
12BC3SOFTWAREGLU D:51 , GLU D:94 , GLU D:127 , HIS D:130 , HOH D:512 , HOH D:514BINDING SITE FOR RESIDUE FE2 D 201
13BC4SOFTWAREGLU E:51 , GLU E:94 , GLU E:127 , HIS E:130 , HOH E:3208BINDING SITE FOR RESIDUE FE2 E 201
14BC5SOFTWAREGLU F:51 , GLU F:94 , GLU F:127 , HOH F:318BINDING SITE FOR RESIDUE FE2 F 201
15BC6SOFTWAREGLU G:51 , GLU G:94 , GLU G:127 , HOH G:4213 , HOH G:4229BINDING SITE FOR RESIDUE FE2 G 201
16BC7SOFTWAREGLU H:51 , GLU H:94 , GLU H:127 , HIS H:130 , HOH H:312 , HOH H:330BINDING SITE FOR RESIDUE FE2 H 201
17BC8SOFTWAREGLU D:81 , GLU D:85 , HOH D:524 , GLU H:85BINDING SITE FOR RESIDUE MG D 501
18BC9SOFTWAREGLU C:85 , GLU G:81 , GLU G:85 , HOH G:4233BINDING SITE FOR RESIDUE MG G 502
19CC1SOFTWAREASP A:132 , GLU A:135 , HOH A:409 , HOH A:411 , HOH A:419 , HOH A:423BINDING SITE FOR RESIDUE MG A 301
20CC2SOFTWAREHOH B:1217 , HOH B:1218 , HOH B:1220 , ASP D:34BINDING SITE FOR RESIDUE MG D 302
21CC3SOFTWAREHOH C:2203 , HOH C:2229 , ASP E:34BINDING SITE FOR RESIDUE MG C 303
22CC4SOFTWAREHOH D:507 , HOH D:516 , HOH D:523 , HOH D:528BINDING SITE FOR RESIDUE MG D 304
23CC5SOFTWAREASP B:34 , HOH B:1201 , HOH E:3220BINDING SITE FOR RESIDUE MG B 305
24CC6SOFTWAREHOH A:424 , HOH B:1216 , HOH F:316BINDING SITE FOR RESIDUE MG F 306
25CC7SOFTWAREASP F:34 , HOH F:308 , ASP G:132 , HOH G:4204 , HOH G:4214BINDING SITE FOR RESIDUE MG F 307
26CC8SOFTWAREHOH G:4206 , HOH G:4210 , HOH G:4216 , HOH G:4226 , HOH G:4232 , HOH H:322BINDING SITE FOR RESIDUE MG H 308
27CC9SOFTWAREASN B:148 , GLN B:151 , ASN C:148 , GLN C:151 , ASN D:148 , GLN D:151 , ASN E:148 , GLN E:151BINDING SITE FOR RESIDUE BA D 401
28DC1SOFTWAREASN A:148 , GLN A:151 , ASN F:148 , GLN F:151 , ASN G:148 , GLN G:151 , ASN H:148 , GLN H:151BINDING SITE FOR RESIDUE BA A 402
29DC2SOFTWAREASN A:23 , PHE A:26 , TYR A:45 , ILE A:49 , MET A:52 , LYS A:53 , ALA A:55 , ASP A:56 , LEU B:19 , ILE B:22 , ASN B:23 , PHE B:26 , TYR B:45 , MET B:52BINDING SITE FOR RESIDUE HEM B 1200
30DC3SOFTWAREASN C:23 , PHE C:26 , TYR C:45 , MET C:52 , LYS C:53 , ASP C:56 , ASN D:23 , PHE D:26 , TYR D:45 , MET D:52 , LYS D:53BINDING SITE FOR RESIDUE HEM C 2200
31DC4SOFTWAREASN E:23 , PHE E:26 , TYR E:45 , MET E:52 , LYS E:53 , ILE E:59 , PHE F:26 , TYR F:45 , MET F:52 , LYS F:53BINDING SITE FOR RESIDUE HEM E 3200
32DC5SOFTWAREASN G:23 , PHE G:26 , TYR G:45 , MET G:52 , ALA G:55 , PHE H:26 , TYR H:45 , MET H:52 , LYS H:53BINDING SITE FOR RESIDUE HEM G 4200

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SOF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SOF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SOF)

(-) PROSITE Motifs  (2, 16)

Asymmetric Unit (2, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BACTERIOFERRITINPS00549 Bacterioferritin signature.BFR_AZOVI1-19
 
 
 
 
 
 
 		  8A:1-19
B:1-19
C:1-19
D:1-19
E:1-19
F:1-19
G:1-19
H:1-19
2FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_AZOVI1-145
 
 
 
 
 
 
 		  8A:1-145
B:1-145
C:1-145
D:1-145
E:1-145
F:1-145
G:1-145
H:1-145
Biological Unit 1 (2, 48)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BACTERIOFERRITINPS00549 Bacterioferritin signature.BFR_AZOVI1-19
 
 
 
 
 
 
 		  24A:1-19
B:1-19
C:1-19
D:1-19
E:1-19
F:1-19
G:1-19
H:1-19
2FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_AZOVI1-145
 
 
 
 
 
 
 		  24A:1-145
B:1-145
C:1-145
D:1-145
E:1-145
F:1-145
G:1-145
H:1-145

(-) Exons   (0, 0)

(no "Exon" information available for 1SOF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
 aligned with BFR_AZOVI | P22759 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     
            BFR_AZOVI     1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
               SCOP domains d1sofa1 A:1-154 Bacterioferritin (cytochrome b1)                                                                                                          - SCOP domains
               CATH domains 1sofA00 A:1-155  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: A:1-145 UniProt: 1-145                                                                                                       ---------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sof A   1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     


Chain B from PDB  Type:PROTEIN  Length:155
 aligned with BFR_AZOVI | P22759 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     
            BFR_AZOVI     1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
               SCOP domains d1sofb_ B: automated matches                                                                                                                                SCOP domains
               CATH domains 1sofB00 B:1-155  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: B:1-145 UniProt: 1-145                                                                                                       ---------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sof B   1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     


Chain C from PDB  Type:PROTEIN  Length:155
 aligned with BFR_AZOVI | P22759 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     
            BFR_AZOVI     1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
               SCOP domains d1sofc_ C: automated matches                                                                                                                                SCOP domains
               CATH domains 1sofC00 C:1-155  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: C:1-145 UniProt: 1-145                                                                                                       ---------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sof C   1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     


Chain D from PDB  Type:PROTEIN  Length:155
 aligned with BFR_AZOVI | P22759 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     
            BFR_AZOVI     1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
               SCOP domains d1sofd_ D: automated matches                                                                                                                                SCOP domains
               CATH domains 1sofD00 D:1-155  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: D:1-145 UniProt: 1-145                                                                                                       ---------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sof D   1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     


Chain E from PDB  Type:PROTEIN  Length:155
 aligned with BFR_AZOVI | P22759 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     
            BFR_AZOVI     1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
               SCOP domains d1sofe_ E: automated matches                                                                                                                                SCOP domains
               CATH domains 1sofE00 E:1-155  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: E:1-145 UniProt: 1-145                                                                                                       ---------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sof E   1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     


Chain F from PDB  Type:PROTEIN  Length:155
 aligned with BFR_AZOVI | P22759 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     
            BFR_AZOVI     1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
               SCOP domains d1soff_ F: automated matches                                                                                                                                SCOP domains
               CATH domains 1sofF00 F:1-155  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: F:1-145 UniProt: 1-145                                                                                                       ---------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sof F   1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     


Chain G from PDB  Type:PROTEIN  Length:155
 aligned with BFR_AZOVI | P22759 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     
            BFR_AZOVI     1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
               SCOP domains d1sofg_ G: automated matches                                                                                                                                SCOP domains
               CATH domains 1sofG00 G:1-155  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: G:1-145 UniProt: 1-145                                                                                                       ---------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sof G   1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     


Chain H from PDB  Type:PROTEIN  Length:155
 aligned with BFR_AZOVI | P22759 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     
            BFR_AZOVI     1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
               SCOP domains d1sofh_ H: automated matches                                                                                                                                SCOP domains
               CATH domains 1sofH00 H:1-155  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
           Pfam domains (1) -------Ferritin-1sofH01 H:8-144                                                                                                                 ----------- Pfam domains (1)
           Pfam domains (2) -------Ferritin-1sofH02 H:8-144                                                                                                                 ----------- Pfam domains (2)
           Pfam domains (3) -------Ferritin-1sofH03 H:8-144                                                                                                                 ----------- Pfam domains (3)
           Pfam domains (4) -------Ferritin-1sofH04 H:8-144                                                                                                                 ----------- Pfam domains (4)
           Pfam domains (5) -------Ferritin-1sofH05 H:8-144                                                                                                                 ----------- Pfam domains (5)
           Pfam domains (6) -------Ferritin-1sofH06 H:8-144                                                                                                                 ----------- Pfam domains (6)
           Pfam domains (7) -------Ferritin-1sofH07 H:8-144                                                                                                                 ----------- Pfam domains (7)
           Pfam domains (8) -------Ferritin-1sofH08 H:8-144                                                                                                                 ----------- Pfam domains (8)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: H:1-145 UniProt: 1-145                                                                                                       ---------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sof H   1 MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQSQMD 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 8)

Asymmetric Unit
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Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
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Clan: Ferritin (185)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (BFR_AZOVI | P22759)
molecular function
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0004322    ferroxidase activity    Catalysis of the reaction: 4 Fe2+ + 4 H+ + O2 = 4 Fe3+ + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0006826    iron ion transport    The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005623    cell    The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BFR_AZOVI | P22759: 2fkz 2fl0

(-) Related Entries Specified in the PDB File

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