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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE AZOTOBACTER VINELANDII BACTERIOFERR 2.6 A RESOLUTION
Keywords BACTERIOFERRITIN, ACTIVE AS 24-MER, FOUR-HELIX BUNDLE, ELECT TRANSPORT
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1SOF     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BACTERIOFERRITIN  A 155 1261 0
2  Protein   BACTERIOFERRITIN  B 155 1261 0
3  Protein   BACTERIOFERRITIN  C 155 1261 0
4  Protein   BACTERIOFERRITIN  D 155 1261 0
5  Protein   BACTERIOFERRITIN  E 155 1261 0
6  Protein   BACTERIOFERRITIN  F 155 1261 0
7  Protein   BACTERIOFERRITIN  G 155 1261 0
8  Protein   BACTERIOFERRITIN  H 155 1261 0
9  Ligand   BACTERIOFERRITIN  A 4 0 4
10  Ligand   BACTERIOFERRITIN  B 4 0 46
11  Ligand   BACTERIOFERRITIN  C 4 0 46
12  Ligand   BACTERIOFERRITIN  D 6 0 6
13  Ligand   BACTERIOFERRITIN  E 3 0 45
14  Ligand   BACTERIOFERRITIN  F 4 0 4
15  Ligand   BACTERIOFERRITIN  G 4 0 46
16  Ligand   BACTERIOFERRITIN  H 3 0 3
17 Water     210 0 210
total       1482 10088 410

Proteins
Unit 1 MET1 LYS2 GLY3 ASP4 LYS5 ILE6 VAL7 ILE8 GLN9 HIS10 LEU11 ASN12 LYS13 ILE14 LEU15 GLY16 ASN17 GLU18 LEU19 ILE20 ALA21 ILE22 ASN23 GLN24 TYR25 PHE26 LEU27 HIS28 ALA29 ARG30 MET31 TYR32 GLU33 ASP34 TRP35 GLY36 LEU37 GLU38 LYS39 LEU40 GLY41 LYS42 HIS43 GLU44 TYR45 HIS46 GLU47 SER48 ILE49 ASP50 GLU51 MET52 LYS53 HIS54 ALA55 ASP56 LYS57 LEU58 ILE59 LYS60 ARG61 ILE62 LEU63 PHE64 LEU65 GLU66 GLY67 LEU68 PRO69 ASN70 LEU71 GLN72 GLU73 LEU74 GLY75 LYS76 LEU77 LEU78 ILE79 GLY80 GLU81 HIS82 THR83 LYS84 GLU85 MET86 LEU87 GLU88 CYS89 ASP90 LEU91 LYS92 LEU93 GLU94 GLN95 ALA96 GLY97 LEU98 PRO99 ASP100 LEU101 LYS102 ALA103 ALA104 ILE105 ALA106 TYR107 CYS108 GLU109 SER110 VAL111 GLY112 ASP113 TYR114 ALA115 SER116 ARG117 GLU118 LEU119 LEU120 GLU121 ASP122 ILE123 LEU124 GLU125 SER126 GLU127 GLU128 ASP129 HIS130 ILE131 ASP132 TRP133 LEU134 GLU135 THR136 GLN137 LEU138 ASP139 LEU140 ILE141 ASP142 LYS143 ILE144 GLY145 LEU146 GLU147 ASN148 TYR149 LEU150 GLN151 SER152 GLN153 MET154 ASP155
Unit 2 MET1 LYS2 GLY3 ASP4 LYS5 ILE6 VAL7 ILE8 GLN9 HIS10 LEU11 ASN12 LYS13 ILE14 LEU15 GLY16 ASN17 GLU18 LEU19 ILE20 ALA21 ILE22 ASN23 GLN24 TYR25 PHE26 LEU27 HIS28 ALA29 ARG30 MET31 TYR32 GLU33 ASP34 TRP35 GLY36 LEU37 GLU38 LYS39 LEU40 GLY41 LYS42 HIS43 GLU44 TYR45 HIS46 GLU47 SER48 ILE49 ASP50 GLU51 MET52 LYS53 HIS54 ALA55 ASP56 LYS57 LEU58 ILE59 LYS60 ARG61 ILE62 LEU63 PHE64 LEU65 GLU66 GLY67 LEU68 PRO69 ASN70 LEU71 GLN72 GLU73 LEU74 GLY75 LYS76 LEU77 LEU78 ILE79 GLY80 GLU81 HIS82 THR83 LYS84 GLU85 MET86 LEU87 GLU88 CYS89 ASP90 LEU91 LYS92 LEU93 GLU94 GLN95 ALA96 GLY97 LEU98 PRO99 ASP100 LEU101 LYS102 ALA103 ALA104 ILE105 ALA106 TYR107 CYS108 GLU109 SER110 VAL111 GLY112 ASP113 TYR114 ALA115 SER116 ARG117 GLU118 LEU119 LEU120 GLU121 ASP122 ILE123 LEU124 GLU125 SER126 GLU127 GLU128 ASP129 HIS130 ILE131 ASP132 TRP133 LEU134 GLU135 THR136 GLN137 LEU138 ASP139 LEU140 ILE141 ASP142 LYS143 ILE144 GLY145 LEU146 GLU147 ASN148 TYR149 LEU150 GLN151 SER152 GLN153 MET154 ASP155
Unit 3 MET1 LYS2 GLY3 ASP4 LYS5 ILE6 VAL7 ILE8 GLN9 HIS10 LEU11 ASN12 LYS13 ILE14 LEU15 GLY16 ASN17 GLU18 LEU19 ILE20 ALA21 ILE22 ASN23 GLN24 TYR25 PHE26 LEU27 HIS28 ALA29 ARG30 MET31 TYR32 GLU33 ASP34 TRP35 GLY36 LEU37 GLU38 LYS39 LEU40 GLY41 LYS42 HIS43 GLU44 TYR45 HIS46 GLU47 SER48 ILE49 ASP50 GLU51 MET52 LYS53 HIS54 ALA55 ASP56 LYS57 LEU58 ILE59 LYS60 ARG61 ILE62 LEU63 PHE64 LEU65 GLU66 GLY67 LEU68 PRO69 ASN70 LEU71 GLN72 GLU73 LEU74 GLY75 LYS76 LEU77 LEU78 ILE79 GLY80 GLU81 HIS82 THR83 LYS84 GLU85 MET86 LEU87 GLU88 CYS89 ASP90 LEU91 LYS92 LEU93 GLU94 GLN95 ALA96 GLY97 LEU98 PRO99 ASP100 LEU101 LYS102 ALA103 ALA104 ILE105 ALA106 TYR107 CYS108 GLU109 SER110 VAL111 GLY112 ASP113 TYR114 ALA115 SER116 ARG117 GLU118 LEU119 LEU120 GLU121 ASP122 ILE123 LEU124 GLU125 SER126 GLU127 GLU128 ASP129 HIS130 ILE131 ASP132 TRP133 LEU134 GLU135 THR136 GLN137 LEU138 ASP139 LEU140 ILE141 ASP142 LYS143 ILE144 GLY145 LEU146 GLU147 ASN148 TYR149 LEU150 GLN151 SER152 GLN153 MET154 ASP155
Unit 4 MET1 LYS2 GLY3 ASP4 LYS5 ILE6 VAL7 ILE8 GLN9 HIS10 LEU11 ASN12 LYS13 ILE14 LEU15 GLY16 ASN17 GLU18 LEU19 ILE20 ALA21 ILE22 ASN23 GLN24 TYR25 PHE26 LEU27 HIS28 ALA29 ARG30 MET31 TYR32 GLU33 ASP34 TRP35 GLY36 LEU37 GLU38 LYS39 LEU40 GLY41 LYS42 HIS43 GLU44 TYR45 HIS46 GLU47 SER48 ILE49 ASP50 GLU51 MET52 LYS53 HIS54 ALA55 ASP56 LYS57 LEU58 ILE59 LYS60 ARG61 ILE62 LEU63 PHE64 LEU65 GLU66 GLY67 LEU68 PRO69 ASN70 LEU71 GLN72 GLU73 LEU74 GLY75 LYS76 LEU77 LEU78 ILE79 GLY80 GLU81 HIS82 THR83 LYS84 GLU85 MET86 LEU87 GLU88 CYS89 ASP90 LEU91 LYS92 LEU93 GLU94 GLN95 ALA96 GLY97 LEU98 PRO99 ASP100 LEU101 LYS102 ALA103 ALA104 ILE105 ALA106 TYR107 CYS108 GLU109 SER110 VAL111 GLY112 ASP113 TYR114 ALA115 SER116 ARG117 GLU118 LEU119 LEU120 GLU121 ASP122 ILE123 LEU124 GLU125 SER126 GLU127 GLU128 ASP129 HIS130 ILE131 ASP132 TRP133 LEU134 GLU135 THR136 GLN137 LEU138 ASP139 LEU140 ILE141 ASP142 LYS143 ILE144 GLY145 LEU146 GLU147 ASN148 TYR149 LEU150 GLN151 SER152 GLN153 MET154 ASP155
Unit 5 MET1 LYS2 GLY3 ASP4 LYS5 ILE6 VAL7 ILE8 GLN9 HIS10 LEU11 ASN12 LYS13 ILE14 LEU15 GLY16 ASN17 GLU18 LEU19 ILE20 ALA21 ILE22 ASN23 GLN24 TYR25 PHE26 LEU27 HIS28 ALA29 ARG30 MET31 TYR32 GLU33 ASP34 TRP35 GLY36 LEU37 GLU38 LYS39 LEU40 GLY41 LYS42 HIS43 GLU44 TYR45 HIS46 GLU47 SER48 ILE49 ASP50 GLU51 MET52 LYS53 HIS54 ALA55 ASP56 LYS57 LEU58 ILE59 LYS60 ARG61 ILE62 LEU63 PHE64 LEU65 GLU66 GLY67 LEU68 PRO69 ASN70 LEU71 GLN72 GLU73 LEU74 GLY75 LYS76 LEU77 LEU78 ILE79 GLY80 GLU81 HIS82 THR83 LYS84 GLU85 MET86 LEU87 GLU88 CYS89 ASP90 LEU91 LYS92 LEU93 GLU94 GLN95 ALA96 GLY97 LEU98 PRO99 ASP100 LEU101 LYS102 ALA103 ALA104 ILE105 ALA106 TYR107 CYS108 GLU109 SER110 VAL111 GLY112 ASP113 TYR114 ALA115 SER116 ARG117 GLU118 LEU119 LEU120 GLU121 ASP122 ILE123 LEU124 GLU125 SER126 GLU127 GLU128 ASP129 HIS130 ILE131 ASP132 TRP133 LEU134 GLU135 THR136 GLN137 LEU138 ASP139 LEU140 ILE141 ASP142 LYS143 ILE144 GLY145 LEU146 GLU147 ASN148 TYR149 LEU150 GLN151 SER152 GLN153 MET154 ASP155
Unit 6 MET1 LYS2 GLY3 ASP4 LYS5 ILE6 VAL7 ILE8 GLN9 HIS10 LEU11 ASN12 LYS13 ILE14 LEU15 GLY16 ASN17 GLU18 LEU19 ILE20 ALA21 ILE22 ASN23 GLN24 TYR25 PHE26 LEU27 HIS28 ALA29 ARG30 MET31 TYR32 GLU33 ASP34 TRP35 GLY36 LEU37 GLU38 LYS39 LEU40 GLY41 LYS42 HIS43 GLU44 TYR45 HIS46 GLU47 SER48 ILE49 ASP50 GLU51 MET52 LYS53 HIS54 ALA55 ASP56 LYS57 LEU58 ILE59 LYS60 ARG61 ILE62 LEU63 PHE64 LEU65 GLU66 GLY67 LEU68 PRO69 ASN70 LEU71 GLN72 GLU73 LEU74 GLY75 LYS76 LEU77 LEU78 ILE79 GLY80 GLU81 HIS82 THR83 LYS84 GLU85 MET86 LEU87 GLU88 CYS89 ASP90 LEU91 LYS92 LEU93 GLU94 GLN95 ALA96 GLY97 LEU98 PRO99 ASP100 LEU101 LYS102 ALA103 ALA104 ILE105 ALA106 TYR107 CYS108 GLU109 SER110 VAL111 GLY112 ASP113 TYR114 ALA115 SER116 ARG117 GLU118 LEU119 LEU120 GLU121 ASP122 ILE123 LEU124 GLU125 SER126 GLU127 GLU128 ASP129 HIS130 ILE131 ASP132 TRP133 LEU134 GLU135 THR136 GLN137 LEU138 ASP139 LEU140 ILE141 ASP142 LYS143 ILE144 GLY145 LEU146 GLU147 ASN148 TYR149 LEU150 GLN151 SER152 GLN153 MET154 ASP155
Unit 7 MET1 LYS2 GLY3 ASP4 LYS5 ILE6 VAL7 ILE8 GLN9 HIS10 LEU11 ASN12 LYS13 ILE14 LEU15 GLY16 ASN17 GLU18 LEU19 ILE20 ALA21 ILE22 ASN23 GLN24 TYR25 PHE26 LEU27 HIS28 ALA29 ARG30 MET31 TYR32 GLU33 ASP34 TRP35 GLY36 LEU37 GLU38 LYS39 LEU40 GLY41 LYS42 HIS43 GLU44 TYR45 HIS46 GLU47 SER48 ILE49 ASP50 GLU51 MET52 LYS53 HIS54 ALA55 ASP56 LYS57 LEU58 ILE59 LYS60 ARG61 ILE62 LEU63 PHE64 LEU65 GLU66 GLY67 LEU68 PRO69 ASN70 LEU71 GLN72 GLU73 LEU74 GLY75 LYS76 LEU77 LEU78 ILE79 GLY80 GLU81 HIS82 THR83 LYS84 GLU85 MET86 LEU87 GLU88 CYS89 ASP90 LEU91 LYS92 LEU93 GLU94 GLN95 ALA96 GLY97 LEU98 PRO99 ASP100 LEU101 LYS102 ALA103 ALA104 ILE105 ALA106 TYR107 CYS108 GLU109 SER110 VAL111 GLY112 ASP113 TYR114 ALA115 SER116 ARG117 GLU118 LEU119 LEU120 GLU121 ASP122 ILE123 LEU124 GLU125 SER126 GLU127 GLU128 ASP129 HIS130 ILE131 ASP132 TRP133 LEU134 GLU135 THR136 GLN137 LEU138 ASP139 LEU140 ILE141 ASP142 LYS143 ILE144 GLY145 LEU146 GLU147 ASN148 TYR149 LEU150 GLN151 SER152 GLN153 MET154 ASP155
Unit 8 MET1 LYS2 GLY3 ASP4 LYS5 ILE6 VAL7 ILE8 GLN9 HIS10 LEU11 ASN12 LYS13 ILE14 LEU15 GLY16 ASN17 GLU18 LEU19 ILE20 ALA21 ILE22 ASN23 GLN24 TYR25 PHE26 LEU27 HIS28 ALA29 ARG30 MET31 TYR32 GLU33 ASP34 TRP35 GLY36 LEU37 GLU38 LYS39 LEU40 GLY41 LYS42 HIS43 GLU44 TYR45 HIS46 GLU47 SER48 ILE49 ASP50 GLU51 MET52 LYS53 HIS54 ALA55 ASP56 LYS57 LEU58 ILE59 LYS60 ARG61 ILE62 LEU63 PHE64 LEU65 GLU66 GLY67 LEU68 PRO69 ASN70 LEU71 GLN72 GLU73 LEU74 GLY75 LYS76 LEU77 LEU78 ILE79 GLY80 GLU81 HIS82 THR83 LYS84 GLU85 MET86 LEU87 GLU88 CYS89 ASP90 LEU91 LYS92 LEU93 GLU94 GLN95 ALA96 GLY97 LEU98 PRO99 ASP100 LEU101 LYS102 ALA103 ALA104 ILE105 ALA106 TYR107 CYS108 GLU109 SER110 VAL111 GLY112 ASP113 TYR114 ALA115 SER116 ARG117 GLU118 LEU119 LEU120 GLU121 ASP122 ILE123 LEU124 GLU125 SER126 GLU127 GLU128 ASP129 HIS130 ILE131 ASP132 TRP133 LEU134 GLU135 THR136 GLN137 LEU138 ASP139 LEU140 ILE141 ASP142 LYS143 ILE144 GLY145 LEU146 GLU147 ASN148 TYR149 LEU150 GLN151 SER152 GLN153 MET154 ASP155

Ligands
Unit 9 FE2201 FE2202 MG301 BA402
Unit 10 FE2201 FE2202 MG305 HEM1200
Unit 11 FE2201 FE2202 MG303 HEM2200
Unit 12 FE2201 FE2202 MG302 MG304 BA401 MG501
Unit 13 FE2201 FE2202 HEM3200
Unit 14 FE2201 FE2202 MG306 MG307
Unit 15 FE2201 FE2202 MG502 HEM4200
Unit 16 FE2201 FE2202 MG308

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany