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(-) Description

Title :  SOLUTION STRUCTURE OF APOCOX11, 30 STRUCTURES
 
Authors :  L. Banci, I. Bertini, F. Cantini, S. Ciofi-Baffoni, L. Gonnelli, S. Mangani, Structural Proteomics In Europe (Spine)
Date :  13 Mar 04  (Deposition) - 10 Aug 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (30x)
Keywords :  Immunoglobulin-Like Fold, Copper Protein, Cytochrome C Oxidase Assembly, Structural Proteomics In Europe, Spine, Structural Genomics, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Banci, I. Bertini, F. Cantini, S. Ciofi-Baffoni, L. Gonnelli, S. Mangani
Solution Structure Of Cox11, A Novel Type Of {Beta}-Immunoglobulin-Like Fold Involved In Cub Site Formation Of Cytochrome C Oxidase.
J. Biol. Chem. V. 279 34833 2004
PubMed-ID: 15181013  |  Reference-DOI: 10.1074/JBC.M403655200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CYTOCHROME C OXIDASE ASSEMBLY PROTEIN CTAG
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET21A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL SOLUBLE DOMAIN
    Gene: CTAG, R00908, SMC00012
    Organism Scientific: SINORHIZOBIUM MELILOTI
    Organism Taxid: 382

 Structural Features

(-) Chains, Units

  
NMR Structure (30x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1SO9)

(-) Sites  (0, 0)

(no "Site" information available for 1SO9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SO9)

(-) Cis Peptide Bonds  (1, 1)

NMR Structure
No.Residues
1Ala A:24 -Ser A:25

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SO9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1SO9)

(-) Exons   (0, 0)

(no "Exon" information available for 1SO9)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:131
 aligned with COXZ_RHIME | Q92RG6 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:131
                                    64        74        84        94       104       114       124       134       144       154       164       174       184 
           COXZ_RHIME    55 VEQASDLILDEKIKVTFDANVAAGLPWEFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIVKPVETQGIKTLTLSYTFYPREPSK 185
               SCOP domains d1so9a_ A: Cytochrome C oxidase assembly protein CtaG                                                                               SCOP domains
               CATH domains 1so9A00 A:21-151 Ctag/Cox11 (Pfam 04442)                                                                                            CATH domains
               Pfam domains CtaG_Cox11-1so9A01 A:21-147                                                                                                    ---- Pfam domains
         Sec.struct. author ............eeeeeeeee.....eeee....eeee.......eeeeeee.....ee...eeee....................ee....eeeeee....hhhhhh...........eeeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1so9 A  21 VEQASDLILDEKIKVTFDANVAAGLPWEFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIVKPVETQGIKTLTLSYTFYPREPSK 151
                                    30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: CtaG_Cox11] (2)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (COXZ_RHIME | Q92RG6)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
biological process
    GO:0008535    respiratory chain complex IV assembly    The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  Cis Peptide Bonds
    Ala A:24 - Ser A:25   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COXZ_RHIME | Q92RG6: 1sp0

(-) Related Entries Specified in the PDB File

1sp0 SOLUTION STRUCTURE OF APOCOX11, MINIMIZED AVERAGE STRUCTURE RELATED ID: CIRMMP18 RELATED DB: TARGETDB