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(-) Description

Title :  STRUCTURAL BASIS FOR THE MECHANISM AND REGULATION OF SIR2 ENZYMES
 
Authors :  J. L. Avalos, J. D. Boeke, C. Wolberger
Date :  29 Jan 04  (Deposition) - 23 Mar 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Enzyme, Sirtuin, Sir2, Nad+, Adp-Ribose, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Avalos, J. D. Boeke, C. Wolberger
Structural Basis For The Mechanism And Regulation Of Sir2 Enzymes
Mol. Cell V. 13 639 2004
PubMed-ID: 15023335  |  Reference-DOI: 10.1016/S1097-2765(04)00082-6
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NAD-DEPENDENT DEACETYLASE 2
    Chains: A, B, C, D, E
    EC Number: 3.5.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21 (DE3) PLYS S
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NPDA2, AF0112
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234
    Synonym: REGULATORY PROTEIN SIR2 HOMOLOG 2, SIR2-AF2

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (9, 33)

Asymmetric/Biological Unit (9, 33)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
22PE1Ligand/IonNONAETHYLENE GLYCOL
3APR1Ligand/IonADENOSINE-5-DIPHOSPHORIBOSE
4EDO3Ligand/Ion1,2-ETHANEDIOL
5NAD3Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
6P6G1Ligand/IonHEXAETHYLENE GLYCOL
7PG42Ligand/IonTETRAETHYLENE GLYCOL
8SO412Ligand/IonSULFATE ION
9ZN9Ligand/IonZINC ION

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:126 , CYS A:129 , CYS A:150 , CYS A:153BINDING SITE FOR RESIDUE ZN A 601
02AC2SOFTWAREHIS A:17 , GLU A:180 , HIS A:183 , HIS C:130BINDING SITE FOR RESIDUE ZN A 602
03AC3SOFTWARECYS B:126 , CYS B:129 , CYS B:150 , CYS B:153BINDING SITE FOR RESIDUE ZN B 603
04AC4SOFTWAREHIS B:17 , GLU B:180 , HIS B:183 , HIS D:130BINDING SITE FOR RESIDUE ZN B 604
05AC5SOFTWARECYS C:126 , CYS C:129 , CYS C:150 , CYS C:153BINDING SITE FOR RESIDUE ZN C 605
06AC6SOFTWAREHIS A:130 , HIS C:17 , GLU C:180 , HIS C:183BINDING SITE FOR RESIDUE ZN C 606
07AC7SOFTWARECYS D:126 , CYS D:129 , CYS D:150 , CYS D:153BINDING SITE FOR RESIDUE ZN D 607
08AC8SOFTWAREHIS B:130 , HIS D:17 , GLU D:180 , HIS D:183BINDING SITE FOR RESIDUE ZN D 608
09AC9SOFTWARECYS E:126 , CYS E:129 , CYS E:150 , CYS E:153BINDING SITE FOR RESIDUE ZN E 609
10BC1SOFTWAREPRO A:170 , GLN A:171 , ARG A:172 , THR A:173 , HOH A:757 , LEU C:169 , PRO C:170 , GLN C:171 , ARG C:172BINDING SITE FOR RESIDUE SO4 A 401
11BC2SOFTWAREPRO B:170 , GLN B:171 , ARG B:172 , THR B:173 , HOH B:711 , HOH B:723 , PRO D:170 , GLN D:171 , ARG D:172BINDING SITE FOR RESIDUE SO4 B 402
12BC3SOFTWAREARG D:161BINDING SITE FOR RESIDUE SO4 D 403
13BC4SOFTWARELYS B:123 , THR B:132 , ARG B:161BINDING SITE FOR RESIDUE SO4 B 404
14BC5SOFTWARELYS A:123 , ARG A:161BINDING SITE FOR RESIDUE SO4 A 405
15BC6SOFTWARELYS C:123 , THR C:132 , ARG C:161BINDING SITE FOR RESIDUE SO4 C 406
16BC7SOFTWAREMET A:91 , LYS A:247 , ARG A:250 , ARG D:90BINDING SITE FOR RESIDUE SO4 A 407
17BC8SOFTWAREALA D:24 , GLY D:25 , GLY D:191 , SER D:192 , SER D:193BINDING SITE FOR RESIDUE SO4 D 408
18BC9SOFTWAREARG B:6 , LYS B:7BINDING SITE FOR RESIDUE SO4 B 409
19CC1SOFTWAREARG B:149BINDING SITE FOR RESIDUE SO4 B 410
20CC2SOFTWARELYS C:144 , ARG C:149BINDING SITE FOR RESIDUE SO4 C 411
21CC3SOFTWARELYS A:57 , LYS C:182BINDING SITE FOR RESIDUE SO4 A 412
22CC4SOFTWAREGLY B:23 , ALA B:24 , GLY B:25 , GLU B:29 , ILE B:32 , THR B:34 , PHE B:35 , ARG B:36 , GLN B:100 , ASN B:101 , ILE B:102 , ASP B:103 , HIS B:118 , GLY B:191 , SER B:193 , ASN B:217 , ALA B:218 , GLU B:219 , GLY B:233 , LYS B:234 , ALA B:235 , HOH B:705 , HOH B:728 , HOH B:741 , HOH B:749BINDING SITE FOR RESIDUE NAD B 701
23CC5SOFTWAREGLY C:23 , ALA C:24 , GLY C:25 , ALA C:28 , GLU C:29 , ILE C:32 , PRO C:33 , THR C:34 , PHE C:35 , ARG C:36 , GLN C:100 , ASN C:101 , ILE C:102 , ASP C:103 , HIS C:118 , GLY C:191 , SER C:192 , SER C:193 , ASN C:217 , ALA C:218 , GLU C:219 , GLY C:233 , LYS C:234 , ALA C:235 , HOH C:703 , HOH C:707 , HOH C:738BINDING SITE FOR RESIDUE NAD C 702
24CC6SOFTWAREGLY A:23 , ALA A:24 , GLY A:25 , GLU A:29 , THR A:34 , GLN A:100 , GLY A:191 , SER A:192 , SER A:193 , ASN A:217 , ALA A:218 , GLU A:219 , GLY A:233 , LYS A:234 , ALA A:235 , HOH A:743 , HOH A:755 , HOH A:760 , HOH A:762BINDING SITE FOR RESIDUE NAD A 703
25CC7SOFTWAREGLY E:23 , ALA E:24 , GLY E:25 , ALA E:28 , GLU E:29 , THR E:34 , PHE E:35 , ARG E:36 , TRP E:42 , GLN E:100 , HIS E:118 , PHE E:165 , GLY E:191 , SER E:192 , SER E:193 , ASN E:217 , ALA E:218 , GLU E:219 , LYS E:234 , ALA E:235BINDING SITE FOR RESIDUE APR E 704
26CC8SOFTWAREALA B:51 , PHE B:66 , SER B:67 , ILE B:102 , MET B:104 , ARG B:108 , HIS B:118 , VAL B:163 , PHE B:165 , LEU B:169 , VAL B:196 , TYR B:197 , HOH B:760BINDING SITE FOR RESIDUE 2PE B 501
27CC9SOFTWARESER C:67 , ILE C:102 , HIS C:118 , VAL C:163 , HOH C:751BINDING SITE FOR RESIDUE P6G C 502
28DC1SOFTWAREPHE D:66 , VAL D:163BINDING SITE FOR RESIDUE PG4 D 503
29DC2SOFTWAREPHE A:63 , SER A:67 , LEU A:74 , MET A:121 , EDO A:505BINDING SITE FOR RESIDUE 1PE A 504
30DC3SOFTWARE1PE A:504BINDING SITE FOR RESIDUE EDO A 505
31DC4SOFTWAREARG C:61 , LYS C:144 , TYR C:156 , HOH C:724BINDING SITE FOR RESIDUE PG4 C 506
32DC5SOFTWAREVAL B:162 , VAL B:163 , GLU B:167 , PRO B:168 , GLN D:171 , ARG D:172 , HOH D:609BINDING SITE FOR RESIDUE EDO B 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1S7G)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Tyr A:197 -Pro A:198
2Tyr B:197 -Pro B:198
3Tyr C:197 -Pro C:198
4Tyr D:197 -Pro D:198
5Tyr E:197 -Pro E:198

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1S7G)

(-) PROSITE Motifs  (1, 5)

Asymmetric/Biological Unit (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SIRTUINPS50305 Sirtuin catalytic domain profile.NPD2_ARCFU6-251
 
 
 
 		  5A:6-251
B:6-251
C:6-251
D:6-251
E:6-250

(-) Exons   (0, 0)

(no "Exon" information available for 1S7G)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:252
 aligned with NPD2_ARCFU | O30124 from UniProtKB/Swiss-Prot  Length:253

    Alignment length:252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  
           NPD2_ARCFU     1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVKRLRSE 252
               SCOP domains d1s7ga_ A: AF0112, Sir2 homolog (Sir2-AF2)                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...eeeee.hhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh..eeeeee....hhhhhh....eee..eeeeeeee.....eee...hhhhhhh.............eeeee.......hhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhh.eeeeee.....hhhhh.eeee.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----SIRTUIN  PDB: A:6-251 UniProt: 6-251                                                                                                                                                                                                                  - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1s7g A   1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVKRLRSE 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  


Chain B from PDB  Type:PROTEIN  Length:252
 aligned with NPD2_ARCFU | O30124 from UniProtKB/Swiss-Prot  Length:253

    Alignment length:252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  
           NPD2_ARCFU     1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVKRLRSE 252
               SCOP domains d1s7gb_ B: AF0112, Sir2 homolog (Sir2-AF2)                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...eeeee.hhhhhhhh....hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhh..eeeeee....hhhhhhh...eee..eeeeeeee.....eee...hhhhhhh.............eeeee.......hhhhhhhhhhhhhhh.eeeee..........hhhhhhhhh..eeeeee.....hhhhh.eeee.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----SIRTUIN  PDB: B:6-251 UniProt: 6-251                                                                                                                                                                                                                  - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1s7g B   1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVKRLRSE 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  


Chain C from PDB  Type:PROTEIN  Length:252
 aligned with NPD2_ARCFU | O30124 from UniProtKB/Swiss-Prot  Length:253

    Alignment length:252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  
           NPD2_ARCFU     1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVKRLRSE 252
               SCOP domains d1s7gc_ C: AF0112, Sir2 homolog (Sir2-AF2)                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh...eeeee.hhhhhhhh....hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhh..eeeeee....hhhhhh....eee..eeeeeeee.....eee...hhhhhhh.............eeeee.......hhhhhhhhhhhhhhh.eeeee..........hhhhhhhhh..eeeeee.....hhhhh.eeee.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----SIRTUIN  PDB: C:6-251 UniProt: 6-251                                                                                                                                                                                                                  - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1s7g C   1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVKRLRSE 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  


Chain D from PDB  Type:PROTEIN  Length:240
 aligned with NPD2_ARCFU | O30124 from UniProtKB/Swiss-Prot  Length:253

    Alignment length:251
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 
           NPD2_ARCFU     2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVKRLRSE 252
               SCOP domains d1s7gd_ D: AF0112, Sir2 hom           olog (Sir2-AF2)                                                                                                                                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh..eeeee.hhhh.-----------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh..eeeeee....hhhhhhh...eee..eeeeeeee.....eee...hhhhhhh.............eeeee.......hhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhh.eeeeee.....hhhhh.eeee.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----SIRTUIN  PDB: D:6-251 UniProt: 6-251                                                                                                                                                                                                                  - PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s7g D   2 EDEIRKAAEILAKSKHAVVFTGAGISA-----------GLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVKRLRSE 252
                                    11        21      |  -        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 
                                                     28          40                                                                                                                                                                                                                    


Chain E from PDB  Type:PROTEIN  Length:248
 aligned with NPD2_ARCFU | O30124 from UniProtKB/Swiss-Prot  Length:253

    Alignment length:250
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
           NPD2_ARCFU     1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVKRLR 250
               SCOP domains d1s7ge_ E: AF0112, Sir2 homolog (Sir2-AF2)                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------SIR2-1s7gE01 E:23-198                                                                                                                                                           ---------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----------------------SIR2-1s7gE02 E:23-198                                                                                                                                                           ---------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----------------------SIR2-1s7gE03 E:23-198                                                                                                                                                           ---------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----------------------SIR2-1s7gE04 E:23-198                                                                                                                                                           ---------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ----------------------SIR2-1s7gE05 E:23-198                                                                                                                                                           ---------------------------------------------------- Pfam domains (5)
         Sec.struct. author hhhhhhhhhhhhhhh..eeeee.hhhhhhhh........hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..--....hhhhhhhhhhhhh..eeeeee....hhhhhh....eee..eeeeeeee.....eee...hhhhhhh.............eeeee.......hhhhhhhhhhhhhh..eeeee.........hhhhhhhhh...eeeeee.....hhhhh.eeee.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----SIRTUIN  PDB: E:6-250 UniProt: 6-251                                                                                                                                                                                                                  PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s7g E   1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKD--FAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVKRLR 250
                                    10        20        30        40        50        60        70 |  |   80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
                                                                                                  72 75
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1S7G)

(-) Pfam Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Clan: FAD_DHS (82)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E   (NPD2_ARCFU | O30124)
molecular function
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0070403    NAD+ binding    Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0034979    NAD-dependent protein deacetylase activity    Catalysis of the removal of one or more acetyl groups from a protein, requiring NAD.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0036054    protein-malonyllysine demalonylase activity    Catalysis of the reaction: protein-malonyllysine + H2O => protein-lysine + malonate. This reaction is the removal of a malonyl group (CO-CH2-CO) from a malonylated lysine residue of a protein or peptide.
    GO:0036055    protein-succinyllysine desuccinylase activity    Catalysis of the reaction: protein-succinyllysine + H2O => protein-lysine + succinate. This reaction is the removal of a succinyl group (CO-CH2-CH2-CO) from a succinylated lysine residue of a protein or peptide.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0036047    peptidyl-lysine demalonylation    The process of removing a malonyl group (CO-CH2-CO) from an malonylated lysine residue in a peptide or protein.
    GO:0036049    peptidyl-lysine desuccinylation    The removal of a succinyl group (CO-CH2-CH2-CO) from a succinylated lysine residue in a peptide or protein.
    GO:0006476    protein deacetylation    The removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

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  1s7g
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 Related Entries

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        NPD2_ARCFU | O30124: 1ma3 1yc2 4twj

(-) Related Entries Specified in the PDB File

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