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1S7G
Asym. Unit
Info
Asym.Unit (216 KB)
Biol.Unit 1 (207 KB)
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(1)
Title
:
STRUCTURAL BASIS FOR THE MECHANISM AND REGULATION OF SIR2 ENZYMES
Authors
:
J. L. Avalos, J. D. Boeke, C. Wolberger
Date
:
29 Jan 04 (Deposition) - 23 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Enzyme, Sirtuin, Sir2, Nad+, Adp-Ribose, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. L. Avalos, J. D. Boeke, C. Wolberger
Structural Basis For The Mechanism And Regulation Of Sir2 Enzymes
Mol. Cell V. 13 639 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(9, 33)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
2a: NONAETHYLENE GLYCOL (2PEa)
3a: ADENOSINE-5-DIPHOSPHORIBOSE (APRa)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
5a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
5b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
5c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
6a: HEXAETHYLENE GLYCOL (P6Ga)
7a: TETRAETHYLENE GLYCOL (PG4a)
7b: TETRAETHYLENE GLYCOL (PG4b)
8a: SULFATE ION (SO4a)
8b: SULFATE ION (SO4b)
8c: SULFATE ION (SO4c)
8d: SULFATE ION (SO4d)
8e: SULFATE ION (SO4e)
8f: SULFATE ION (SO4f)
8g: SULFATE ION (SO4g)
8h: SULFATE ION (SO4h)
8i: SULFATE ION (SO4i)
8j: SULFATE ION (SO4j)
8k: SULFATE ION (SO4k)
8l: SULFATE ION (SO4l)
9a: ZINC ION (ZNa)
9b: ZINC ION (ZNb)
9c: ZINC ION (ZNc)
9d: ZINC ION (ZNd)
9e: ZINC ION (ZNe)
9f: ZINC ION (ZNf)
9g: ZINC ION (ZNg)
9h: ZINC ION (ZNh)
9i: ZINC ION (ZNi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
2PE
1
Ligand/Ion
NONAETHYLENE GLYCOL
3
APR
1
Ligand/Ion
ADENOSINE-5-DIPHOSPHORIBOSE
4
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
5
NAD
3
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
6
P6G
1
Ligand/Ion
HEXAETHYLENE GLYCOL
7
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
8
SO4
12
Ligand/Ion
SULFATE ION
9
ZN
9
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:126 , CYS A:129 , CYS A:150 , CYS A:153
BINDING SITE FOR RESIDUE ZN A 601
02
AC2
SOFTWARE
HIS A:17 , GLU A:180 , HIS A:183 , HIS C:130
BINDING SITE FOR RESIDUE ZN A 602
03
AC3
SOFTWARE
CYS B:126 , CYS B:129 , CYS B:150 , CYS B:153
BINDING SITE FOR RESIDUE ZN B 603
04
AC4
SOFTWARE
HIS B:17 , GLU B:180 , HIS B:183 , HIS D:130
BINDING SITE FOR RESIDUE ZN B 604
05
AC5
SOFTWARE
CYS C:126 , CYS C:129 , CYS C:150 , CYS C:153
BINDING SITE FOR RESIDUE ZN C 605
06
AC6
SOFTWARE
HIS A:130 , HIS C:17 , GLU C:180 , HIS C:183
BINDING SITE FOR RESIDUE ZN C 606
07
AC7
SOFTWARE
CYS D:126 , CYS D:129 , CYS D:150 , CYS D:153
BINDING SITE FOR RESIDUE ZN D 607
08
AC8
SOFTWARE
HIS B:130 , HIS D:17 , GLU D:180 , HIS D:183
BINDING SITE FOR RESIDUE ZN D 608
09
AC9
SOFTWARE
CYS E:126 , CYS E:129 , CYS E:150 , CYS E:153
BINDING SITE FOR RESIDUE ZN E 609
10
BC1
SOFTWARE
PRO A:170 , GLN A:171 , ARG A:172 , THR A:173 , HOH A:757 , LEU C:169 , PRO C:170 , GLN C:171 , ARG C:172
BINDING SITE FOR RESIDUE SO4 A 401
11
BC2
SOFTWARE
PRO B:170 , GLN B:171 , ARG B:172 , THR B:173 , HOH B:711 , HOH B:723 , PRO D:170 , GLN D:171 , ARG D:172
BINDING SITE FOR RESIDUE SO4 B 402
12
BC3
SOFTWARE
ARG D:161
BINDING SITE FOR RESIDUE SO4 D 403
13
BC4
SOFTWARE
LYS B:123 , THR B:132 , ARG B:161
BINDING SITE FOR RESIDUE SO4 B 404
14
BC5
SOFTWARE
LYS A:123 , ARG A:161
BINDING SITE FOR RESIDUE SO4 A 405
15
BC6
SOFTWARE
LYS C:123 , THR C:132 , ARG C:161
BINDING SITE FOR RESIDUE SO4 C 406
16
BC7
SOFTWARE
MET A:91 , LYS A:247 , ARG A:250 , ARG D:90
BINDING SITE FOR RESIDUE SO4 A 407
17
BC8
SOFTWARE
ALA D:24 , GLY D:25 , GLY D:191 , SER D:192 , SER D:193
BINDING SITE FOR RESIDUE SO4 D 408
18
BC9
SOFTWARE
ARG B:6 , LYS B:7
BINDING SITE FOR RESIDUE SO4 B 409
19
CC1
SOFTWARE
ARG B:149
BINDING SITE FOR RESIDUE SO4 B 410
20
CC2
SOFTWARE
LYS C:144 , ARG C:149
BINDING SITE FOR RESIDUE SO4 C 411
21
CC3
SOFTWARE
LYS A:57 , LYS C:182
BINDING SITE FOR RESIDUE SO4 A 412
22
CC4
SOFTWARE
GLY B:23 , ALA B:24 , GLY B:25 , GLU B:29 , ILE B:32 , THR B:34 , PHE B:35 , ARG B:36 , GLN B:100 , ASN B:101 , ILE B:102 , ASP B:103 , HIS B:118 , GLY B:191 , SER B:193 , ASN B:217 , ALA B:218 , GLU B:219 , GLY B:233 , LYS B:234 , ALA B:235 , HOH B:705 , HOH B:728 , HOH B:741 , HOH B:749
BINDING SITE FOR RESIDUE NAD B 701
23
CC5
SOFTWARE
GLY C:23 , ALA C:24 , GLY C:25 , ALA C:28 , GLU C:29 , ILE C:32 , PRO C:33 , THR C:34 , PHE C:35 , ARG C:36 , GLN C:100 , ASN C:101 , ILE C:102 , ASP C:103 , HIS C:118 , GLY C:191 , SER C:192 , SER C:193 , ASN C:217 , ALA C:218 , GLU C:219 , GLY C:233 , LYS C:234 , ALA C:235 , HOH C:703 , HOH C:707 , HOH C:738
BINDING SITE FOR RESIDUE NAD C 702
24
CC6
SOFTWARE
GLY A:23 , ALA A:24 , GLY A:25 , GLU A:29 , THR A:34 , GLN A:100 , GLY A:191 , SER A:192 , SER A:193 , ASN A:217 , ALA A:218 , GLU A:219 , GLY A:233 , LYS A:234 , ALA A:235 , HOH A:743 , HOH A:755 , HOH A:760 , HOH A:762
BINDING SITE FOR RESIDUE NAD A 703
25
CC7
SOFTWARE
GLY E:23 , ALA E:24 , GLY E:25 , ALA E:28 , GLU E:29 , THR E:34 , PHE E:35 , ARG E:36 , TRP E:42 , GLN E:100 , HIS E:118 , PHE E:165 , GLY E:191 , SER E:192 , SER E:193 , ASN E:217 , ALA E:218 , GLU E:219 , LYS E:234 , ALA E:235
BINDING SITE FOR RESIDUE APR E 704
26
CC8
SOFTWARE
ALA B:51 , PHE B:66 , SER B:67 , ILE B:102 , MET B:104 , ARG B:108 , HIS B:118 , VAL B:163 , PHE B:165 , LEU B:169 , VAL B:196 , TYR B:197 , HOH B:760
BINDING SITE FOR RESIDUE 2PE B 501
27
CC9
SOFTWARE
SER C:67 , ILE C:102 , HIS C:118 , VAL C:163 , HOH C:751
BINDING SITE FOR RESIDUE P6G C 502
28
DC1
SOFTWARE
PHE D:66 , VAL D:163
BINDING SITE FOR RESIDUE PG4 D 503
29
DC2
SOFTWARE
PHE A:63 , SER A:67 , LEU A:74 , MET A:121 , EDO A:505
BINDING SITE FOR RESIDUE 1PE A 504
30
DC3
SOFTWARE
1PE A:504
BINDING SITE FOR RESIDUE EDO A 505
31
DC4
SOFTWARE
ARG C:61 , LYS C:144 , TYR C:156 , HOH C:724
BINDING SITE FOR RESIDUE PG4 C 506
32
DC5
SOFTWARE
VAL B:162 , VAL B:163 , GLU B:167 , PRO B:168 , GLN D:171 , ARG D:172 , HOH D:609
BINDING SITE FOR RESIDUE EDO B 508
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 5)
Info
All PROSITE Patterns/Profiles
1: SIRTUIN (A:6-251,B:6-251,C:6-251,D:6-251,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIRTUIN
PS50305
Sirtuin catalytic domain profile.
NPD2_ARCFU
6-251
5
A:6-251
B:6-251
C:6-251
D:6-251
E:6-250
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d1s7ga_ (A:)
1b: SCOP_d1s7gb_ (B:)
1c: SCOP_d1s7gc_ (C:)
1d: SCOP_d1s7gd_ (D:)
1e: SCOP_d1s7ge_ (E:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DHS-like NAD/FAD-binding domain
(176)
Superfamily
:
DHS-like NAD/FAD-binding domain
(176)
Family
:
Sir2 family of transcriptional regulators
(31)
Protein domain
:
AF0112, Sir2 homolog (Sir2-AF2)
(3)
Archaeoglobus fulgidus [TaxId: 2234]
(3)
1a
d1s7ga_
A:
1b
d1s7gb_
B:
1c
d1s7gc_
C:
1d
d1s7gd_
D:
1e
d1s7ge_
E:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_SIR2_1s7gE01 (E:23-198)
1b: PFAM_SIR2_1s7gE02 (E:23-198)
1c: PFAM_SIR2_1s7gE03 (E:23-198)
1d: PFAM_SIR2_1s7gE04 (E:23-198)
1e: PFAM_SIR2_1s7gE05 (E:23-198)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
FAD_DHS
(82)
Family
:
SIR2
(16)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(5)
1a
SIR2-1s7gE01
E:23-198
1b
SIR2-1s7gE02
E:23-198
1c
SIR2-1s7gE03
E:23-198
1d
SIR2-1s7gE04
E:23-198
1e
SIR2-1s7gE05
E:23-198
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