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(-) Description

Title :  SOLUTION STRUCTURE OF THE ESCHERICHIA COLI TOLA C-TERMINAL DOMAIN
 
Authors :  C. Deprez, L. Blanchard, J. -P. Simorre, M. Gavioli, F. Guerlesquin, C. Lazdunski, R. Lloubes, D. Marion
Date :  22 Jan 04  (Deposition) - 15 Feb 05  (Release) - 28 Apr 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (16x)
Keywords :  Tol G3P Interaction, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Deprez, R. Lloubes, M. Gavioli, D. Marion, F. Guerlesquin, L. Blanchard
Solution Structure Of The E. Coli Tola C-Terminal Domain Reveals Conformational Changes Upon Binding To The Phage G3P N-Terminal Domain.
J. Mol. Biol. V. 346 1047 2005
PubMed-ID: 15701516  |  Reference-DOI: 10.1016/J.JMB.2004.12.028
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TOLA PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI STR. K12 SUBSTR. W3110
    Expression System PlasmidPTOLAIII3
    Expression System StrainW3110
    Expression System Taxid316407
    Expression System Vector TypePLASMID
    FragmentC-TERMINAL DOMAIN (RESIDUES 325-421)
    GeneTOLA, CIM, EXCC, LKY, B0739
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562

 Structural Features

(-) Chains, Units

  
NMR Structure (16x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1S62)

(-) Sites  (0, 0)

(no "Site" information available for 1S62)

(-) SS Bonds  (1, 1)

NMR Structure
No.Residues
1A:42 -A:67

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1S62)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1S62)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1S62)

(-) Exons   (0, 0)

(no "Exon" information available for 1S62)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:102
 aligned with TOLA_ECOLI | P19934 from UniProtKB/Swiss-Prot  Length:421

    Alignment length:102
                                                                                                                             421  
                                   331       341       351       361       371       381       391       401       411       421  
           TOLA_ECOLI   322 AGSGNTKNNGASGADINNYAGQIKSAIESKFYDASSYAGKTCTLRIKLAPDGMLLDIKPEGGDPALCQAALAAAKLAKIPKPPSQAVYEVFKNAPLDFKP--   -
               SCOP domains d1s62a_ A: TolA                                                                                        SCOP domains
               CATH domains 1s62A00 A:1-102  [code=3.30.1150.10, no name defined]                                                  CATH domains
               Pfam domains ---TolA-1s62A01 A:4-98                                                                            ---- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhh..............eeeee.....eeeeee...hhhhhhhhhhhhhh.......hhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1s62 A   1 AEFGNTKNNGASGADINNYAGQIKSAIESKFYDASSYAGKTCTLRIKLAPDGMLLDIKPEGGDPALCQAALAAAKLAKIPKPPSQAVYEVFKNAPLDFKPHH 102
                                    10        20        30        40        50        60        70        80        90       100  

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

NMR Structure

(-) Gene Ontology  (14, 14)

NMR Structure(hide GO term definitions)
Chain A   (TOLA_ECOLI | P19934)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0043213    bacteriocin transport    The directed movement of a bacteriocin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Bacteriocins are a group of antibiotics produced by bacteria and are encoded by a group of naturally occurring plasmids, e.g. Col E1. Bacteriocins are toxic to bacteria closely related to the bacteriocin producing strain.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0071237    cellular response to bacteriocin    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bacteriocin stimulus. A bacteriocin is a protein substance released by certain bacteria that kills but does not lyse closely related strains of bacteria. Specific bacteriocins attach to specific receptors on cell walls and induce specific metabolic block, e.g. cessation of nucleic acid or protein synthesis of oxidative phosphorylation.
    GO:0017038    protein import    The targeting and directed movement of proteins into a cell or organelle. Not all import involves an initial targeting event.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
cellular component
    GO:0032153    cell division site    The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TOLA_ECOLI | P199341tol 3qdp 3qdr

(-) Related Entries Specified in the PDB File

4771 ASSIGNMENT OF THE 1H, 15N AND 13C RESONANCES OF THE SAME PROTEIN, USED TO CALCULATE ITS STRUCTURE