Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
(-)Biological Unit 7
(-)Biological Unit 8
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)
Image Biological Unit 7
Biological Unit 7  (Jmol Viewer)
Image Biological Unit 8
Biological Unit 8  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN ANTI-HIV-1 GP120-REACTIVE ANTIBODY 47E FAB
 
Authors :  C. C. Huang, M. Venturi, S. Majeed, M. J. Moore, S. Phogat, M. -Y. Zhang, D. S. Dimitrov, W. A. Hendrickson, J. Robinson, J. Sodroski, R. Wyatt, H. Choe, M. Farzan, P. D. Kwong
Date :  24 Dec 03  (Deposition) - 03 Feb 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  K,L  (1x)
Biol. Unit 7:  M,N  (1x)
Biol. Unit 8:  O,P  (1x)
Keywords :  Hiv-1; Gp120; Cd4I; Antibodies; Tyrosine Sulfation; Vh-Gene Usage, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. C. Huang, M. Venturi, S. Majeed, M. J. Moore, S. Phogat, M. -Y. Zhang, D. S. Dimitrov, W. A. Hendrickson, J. Robinson, J. Sodroski, R. Wyatt, H. Choe, M. Farzan, P. D. Kwong
Structural Basis Of Tyrosine Sulfation And Vh-Gene Usage In Antibodies That Recognize The Hiv Type 1 Coreceptor-Binding Site On Gp120
Proc. Natl. Acad. Sci. Usa V. 101 2706 2004
PubMed-ID: 14981267  |  Reference-DOI: 10.1073/PNAS.0308527100
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FAB 47E LIGHT CHAIN
    ChainsA, C, E, G, I, K, M, O
    EngineeredYES
    Expression SystemHUMAN HERPESVIRUS 4
    Expression System CellIMMORTALIZED B-CELL CLONE FUSED WITH A MURINE B-CELL FUSION PARTNER
    Expression System CommonEPSTEIN-BARR VIRUS
    Expression System Taxid10376
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 2 - FAB 47E HEAVY CHAIN
    ChainsB, D, F, H, J, L, N, P
    EngineeredYES
    Expression SystemHUMAN HERPESVIRUS 4
    Expression System CellIMMORTALIZED B-CELL CLONE FUSED WITH A MURINE B-CELL FUSION PARTNER
    Expression System CommonEPSTEIN-BARR VIRUS
    Expression System Taxid10376
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit ABCDEFGHIJKLMNOP
Biological Unit 1 (1x)AB              
Biological Unit 2 (1x)  CD            
Biological Unit 3 (1x)    EF          
Biological Unit 4 (1x)      GH        
Biological Unit 5 (1x)        IJ      
Biological Unit 6 (1x)          KL    
Biological Unit 7 (1x)            MN  
Biological Unit 8 (1x)              OP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1RZI)

(-) Sites  (0, 0)

(no "Site" information available for 1RZI)

(-) SS Bonds  (32, 32)

Asymmetric Unit
No.Residues
1A:23 -A:88
2A:134 -A:194
3B:22 -B:92
4B:140 -B:196
5C:23 -C:88
6C:134 -C:194
7D:22 -D:92
8D:140 -D:196
9E:23 -E:88
10E:134 -E:194
11F:22 -F:92
12F:140 -F:196
13G:23 -G:88
14G:134 -G:194
15H:22 -H:92
16H:140 -H:196
17I:23 -I:88
18I:134 -I:194
19J:22 -J:92
20J:140 -J:196
21K:23 -K:88
22K:134 -K:194
23L:22 -L:92
24L:140 -L:196
25M:23 -M:88
26M:134 -M:194
27N:22 -N:92
28N:140 -N:196
29O:23 -O:88
30O:134 -O:194
31P:22 -P:92
32P:140 -P:196

(-) Cis Peptide Bonds  (31, 31)

Asymmetric Unit
No.Residues
1Tyr A:140 -Pro A:141
2Phe B:146 -Pro B:147
3Glu B:148 -Pro B:149
4Ser C:7 -Pro C:8
5Tyr C:140 -Pro C:141
6Phe D:146 -Pro D:147
7Glu D:148 -Pro D:149
8Ser E:7 -Pro E:8
9Tyr E:140 -Pro E:141
10Phe F:146 -Pro F:147
11Glu F:148 -Pro F:149
12Ser G:7 -Pro G:8
13Tyr G:140 -Pro G:141
14Phe H:146 -Pro H:147
15Glu H:148 -Pro H:149
16Ser I:7 -Pro I:8
17Tyr I:140 -Pro I:141
18Phe J:146 -Pro J:147
19Glu J:148 -Pro J:149
20Ser K:7 -Pro K:8
21Tyr K:140 -Pro K:141
22Phe L:146 -Pro L:147
23Glu L:148 -Pro L:149
24Ser M:7 -Pro M:8
25Tyr M:140 -Pro M:141
26Phe N:146 -Pro N:147
27Glu N:148 -Pro N:149
28Ser O:7 -Pro O:8
29Tyr O:140 -Pro O:141
30Phe P:146 -Pro P:147
31Glu P:148 -Pro P:149

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1RZI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1RZI)

(-) Exons   (0, 0)

(no "Exon" information available for 1RZI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains d1rzia1 A:2-107 Immunoglobulin light chain kappa variable domain, VL-kappa                               d1rzia2 A:108-213 Immunoglobulin light chain kappa constant domain, CL-kappa                               SCOP domains
               CATH domains 1rziA01 A:2-107 Immunoglobulins                                                                          1rziA02 A:108-211 Immunoglobulins                                                                       -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.....ee....eeeeeeee.......eeeeee......eeeee...ee.......eeee....eeeeee.........eeeeee......ee...ee.ee.......eeeee..........eeeeeeeeeee.....eeeeee..ee....ee............eeeeeeeeeehhhhhh...eeeeeee..eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rzi A    2 IQMTQSPSLSASVGDRVTITCRASQSISSYLNWYQQKPGKVPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTSHTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                  ||12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
                                  8|                                                                                                                                                                                                           
                                  10                                                                                                                                                                                                           

Chain B from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                         
               SCOP domains d1rzib1 B:1-113 Immunoglobulin heavy chain variable domain, VH                                                      d1rzib2 B:114-213 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                      SCOP domains
               CATH domains 1rziB01 B:1-113 Immunoglobulins                                                                                     1rziB02 B:114-213 Immunoglobulins                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee...eee......ee.eee..........eeeee......eeeeee.hhhh.eee.hhhh..eeeeee....eeeeee........eeeeee.............eeee........eeee.......ee..eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhh.....eeeehhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1rzi B    1 QVQLLQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPVFGSANYAQKFQGRVTITADEATSTTYMELSSLRSEDTAVYFCAKGGHGMDVWGQGTTVTVASASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96|||    107       117       127       137       147       157       167       177       187       197       207      
                                                                              52A                            82A||            96|||                                                                                                                 
                                                                                                              82B|           100J||                                                                                                                 
                                                                                                               82C            100K|                                                                                                                 
                                                                                                                               100L                                                                                                                 

Chain C from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains d1rzic1 C:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                d1rzic2 C:108-213 Immunoglobulin light chain kappa constant domain, CL-kappa                               SCOP domains
               CATH domains 1rziC01 C:1-107 Immunoglobulins                                                                           1rziC02 C:108-211 Immunoglobulins                                                                       -- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee..eeee....eeeeeee........eeeeee......eeeee...ee.........ee....eeeeee.........eeeeee...........eeeee........eeee..hhhhhhh.eeeeeeeeeee......eeeee..ee....eeeee.........eeeeeeeeeehhhhhhh.eeeeee........eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rzi C    1 DIQMTQSPSLSASVGDRVTITCRASQSISSYLNWYQQKPGKVPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTSHTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                   |11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
                                   8|                                                                                                                                                                                                           
                                   10                                                                                                                                                                                                           

Chain D from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                         
               SCOP domains d1rzid1 D:1-113 Immunoglobulin heavy chain variable domain, VH                                                      d1rzid2 D:114-213 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                      SCOP domains
               CATH domains 1rziD01 D:1-113 Immunoglobulins                                                                                     1rziD02 D:114-213 Immunoglobulins                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee............eeeeee............eee.....eee.ee.hhhhh..ee.......eeeee.....eeeeee...hhhhheee..ee......ee...eee..........eee............eeeeeeeeeee........hhhhh....eee...ee.....eeeeeeeeee.........eeeeee....eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1rzi D    1 QVQLLQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPVFGSANYAQKFQGRVTITADEATSTTYMELSSLRSEDTAVYFCAKGGHGMDVWGQGTTVTVASASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96|||    107       117       127       137       147       157       167       177       187       197       207      
                                                                              52A                            82A||            96|||                                                                                                                 
                                                                                                              82B|           100J||                                                                                                                 
                                                                                                               82C            100K|                                                                                                                 
                                                                                                                               100L                                                                                                                 

Chain E from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains d1rzie1 E:2-107 Immunoglobulin light chain kappa variable domain, VL-kappa                               d1rzie2 E:108-213 Immunoglobulin light chain kappa constant domain, CL-kappa                               SCOP domains
               CATH domains 1rziE01 E:2-107 Immunoglobulins                                                                          1rziE02 E:108-211 Immunoglobulins                                                                       -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.....eeeeee........eeeeee......eeeee...ee.......ee..ee..eeeeee.........eeeeee......ee...eeeee.......eeeee..hhhhhhhheeeeeeeeeee....eeeeeee..eeee..eeeeee........eeeeeeeeeehhhhhhh.eeeeeeee......eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rzi E    2 IQMTQSPSLSASVGDRVTITCRASQSISSYLNWYQQKPGKVPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTSHTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                  ||12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
                                  8|                                                                                                                                                                                                           
                                  10                                                                                                                                                                                                           

Chain F from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                          
               SCOP domains d1rzif1 F:1-113 Immunoglobulin heavy chain variable domain, VH                                                      d1rzif2 F:114-214 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 1rziF01 F:1-113 Immunoglobulins                                                                                     1rziF02 F:114-214 Immunoglobulins                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................................eeeee.......eeeeeehhhhh..ee.......eeee........eeee..........eeeee......ee................eeeee..........ee..eeeeeee....ee..hhhhh.....ee...ee.....eeeeee..ee.hhhhh...ee..ee........ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rzi F    1 QVQLLQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPVFGSANYAQKFQGRVTITADEATSTTYMELSSLRSEDTAVYFCAKGGHGMDVWGQGTTVTVASASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  214
                                    10        20        30        40        50  |     59        69        79   |||  86        96|||    107       117       127       137       147       157       167       177       187       197       207       
                                                                              52A                            82A||            96|||                                                                                                                  
                                                                                                              82B|           100J||                                                                                                                  
                                                                                                               82C            100K|                                                                                                                  
                                                                                                                               100L                                                                                                                  

Chain G from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains d1rzig1 G:2-107 Immunoglobulin light chain kappa variable domain, VL-kappa                               d1rzig2 G:108-213 Immunoglobulin light chain kappa constant domain, CL-kappa                               SCOP domains
               CATH domains 1rziG01 G:2-107 Immunoglobulins                                                                          1rziG02 G:108-211 Immunoglobulins                                                                       -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....eee....eeeee.ee.......eeeeee......eeeee...ee........eeee....eeeee...hhhhh.eeeeee......ee...eeeee..............hhhhhhh.eeeeeee..........eeeee..eeee..eeeee...........eeeeeeeehhhhhh...eeeee................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rzi G    2 IQMTQSPSLSASVGDRVTITCRASQSISSYLNWYQQKPGKVPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTSHTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                  ||12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
                                  8|                                                                                                                                                                                                           
                                  10                                                                                                                                                                                                           

Chain H from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                         
               SCOP domains d1rzih1 H:1-113 Immunoglobulin heavy chain variable domain, VH                                                      d1rzih2 H:114-213 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                      SCOP domains
               CATH domains 1rziH01 H:1-113 Immunoglobulins                                                                                     1rziH02 H:114-213 Immunoglobulins                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........ee......ee..ee....hhhhh.eeeeee.....eeeeeee.......ee.hhhh..eeeeee....eeeeee........eeeeeee......ee....eee........................eee.........................eee..............eeeeee.hhh........................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1rzi H    1 QVQLLQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPVFGSANYAQKFQGRVTITADEATSTTYMELSSLRSEDTAVYFCAKGGHGMDVWGQGTTVTVASASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96|||    107       117       127       137       147       157       167       177       187       197       207      
                                                                              52A                            82A||            96|||                                                                                                                 
                                                                                                              82B|           100J||                                                                                                                 
                                                                                                               82C            100K|                                                                                                                 
                                                                                                                               100L                                                                                                                 

Chain I from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains d1rzii1 I:2-107 Immunoglobulin light chain kappa variable domain, VL-kappa                               d1rzii2 I:108-213 Immunoglobulin light chain kappa constant domain, CL-kappa                               SCOP domains
               CATH domains 1rziI01 I:2-107 Immunoglobulins                                                                          1rziI02 I:108-211 Immunoglobulins                                                                       -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...eee.....eeeeeee.......eeeeeee..eeeeeeee...ee..........eee..eeeeee...hhhhh.eeeeee...........eeeee.......ee.....hhhhhh..eeeee..eeee.......eeee...eee....eee.........eeeeeeeeeehhhhhh..eeeee.............ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rzi I    2 IQMTQSPSLSASVGDRVTITCRASQSISSYLNWYQQKPGKVPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTSHTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                  ||12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
                                  8|                                                                                                                                                                                                           
                                  10                                                                                                                                                                                                           

Chain J from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                         
               SCOP domains d1rzij1 J:1-113 Immunoglobulin heavy chain variable domain, VH                                                      d1rzij2 J:114-213 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                      SCOP domains
               CATH domains 1rziJ01 J:1-113 Immunoglobulins                                                                                     1rziJ02 J:114-213 Immunoglobulins                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee............eeeee..........eeeeee.....eeeeeee.......ee.........ee.......eeee..........eeeeee......ee................eeeee..........eeeeeeeeeee.......ee........eee..........eeeeeeeeee.hhh....eeee..hhhhh.....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1rzi J    1 QVQLLQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPVFGSANYAQKFQGRVTITADEATSTTYMELSSLRSEDTAVYFCAKGGHGMDVWGQGTTVTVASASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96|||    107       117       127       137       147       157       167       177       187       197       207      
                                                                              52A                            82A||            96|||                                                                                                                 
                                                                                                              82B|           100J||                                                                                                                 
                                                                                                               82C            100K|                                                                                                                 
                                                                                                                               100L                                                                                                                 

Chain K from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains d1rzik1 K:2-107 Immunoglobulin light chain kappa variable domain, VL-kappa                               d1rzik2 K:108-213 Immunoglobulin light chain kappa constant domain, CL-kappa                               SCOP domains
               CATH domains 1rziK01 K:2-107 Immunoglobulins                                                                          1rziK02 K:108-211 Immunoglobulins                                                                       -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...eeee....eeee..ee.......eeeeee......eeee.............eeee......eeee.........eeeeee...........eeeee.........eee..hhhhhhhh.eeeeee........ee..eee..ee....eeeee...........eeeeeeehhhhhh...eeee.eee..eeeee..eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rzi K    2 IQMTQSPSLSASVGDRVTITCRASQSISSYLNWYQQKPGKVPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTSHTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                  ||12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
                                  8|                                                                                                                                                                                                           
                                  10                                                                                                                                                                                                           

Chain L from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                        
               SCOP domains d1rzil1 L:1-113 Immunoglobulin heavy chain variable domain, VH                                                     d1rzil2 L:114-213 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                      SCOP domains
               CATH domains 1rziL01 L:1-113 Immunoglobulins                                                                                    1rziL02 L:114-213 Immunoglobulins                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee...eee....eeeeeee....hhhhh.eeeeee.....eeeeeee.........hhhhh...eee......eeeeeee..hhhhheeeeeee..........eeeee........eeeee..........eeeeeeeeeee........hhhhh....eee..........eeeeeeeeeehhhhh....eeeee......eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rzi L    1 QVQLLQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPVFGSANYAQKFQGRVTITADEATSTTYMELSSLRSEDTAVYFCAKGHGMDVWGQGTTVTVASASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP  213
                                    10        20        30        40        50  |     59        69        79   |||  86      100J||     108       118       128       138       148       158       168       178       188       198       208     
                                                                              52A                            82A||           95|||                                                                                                                 
                                                                                                              82B|          100J||                                                                                                                 
                                                                                                               82C           100K|                                                                                                                 
                                                                                                                              100L                                                                                                                 

Chain M from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains d1rzim1 M:2-107 Immunoglobulin light chain kappa variable domain, VL-kappa                               d1rzim2 M:108-213 Immunoglobulin light chain kappa constant domain, CL-kappa                               SCOP domains
               CATH domains 1rziM01 M:2-107 Immunoglobulins                                                                          1rziM02 M:108-211 Immunoglobulins                                                                       -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...eeee.......eeeee.......eeeeee......eeeee...ee.......ee......eeeeee...hhhhh.eeeeee...........eeeee.......eeeee..hhhhhh...eeeeeeee.......eeeeee..ee.......ee...........eeeeeeehhhhhh...eeeeeeee..eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rzi M    2 IQMTQSPSLSASVGDRVTITCRASQSISSYLNWYQQKPGKVPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTSHTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                  ||12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
                                  8|                                                                                                                                                                                                           
                                  10                                                                                                                                                                                                           

Chain N from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                         
               SCOP domains d1rzin1 N:1-113 Immunoglobulin heavy chain variable domain, VH                                                      d1rzin2 N:114-213 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                      SCOP domains
               CATH domains 1rziN01 N:1-113 Immunoglobulins                                                                                     1rziN02 N:114-213 Immunoglobulins                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eee.....eee.............eeeeee.....eeeeeee......eee.hhhh..eee..........eee........eeeeee............eeeee........eeeee......ee..eeeeeeeeeee.....eeee........eee...ee.....eee.eeeeeehhhhh....eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1rzi N    1 QVQLLQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPVFGSANYAQKFQGRVTITADEATSTTYMELSSLRSEDTAVYFCAKGGHGMDVWGQGTTVTVASASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96|||    107       117       127       137       147       157       167       177       187       197       207      
                                                                              52A                            82A||            96|||                                                                                                                 
                                                                                                              82B|           100J||                                                                                                                 
                                                                                                               82C            100K|                                                                                                                 
                                                                                                                               100L                                                                                                                 

Chain O from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains d1rzio1 O:2-107 Immunoglobulin light chain kappa variable domain, VL-kappa                               d1rzio2 O:108-213 Immunoglobulin light chain kappa constant domain, CL-kappa                               SCOP domains
               CATH domains 1rziO01 O:2-107 Immunoglobulins                                                                          1rziO02 O:108-211 Immunoglobulins                                                                       -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee....eeeeeee........eeeee.......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee...........eeeee.......eeeee..hhhhhh......eeeeeee.....eeeeee..eeee..eeeee.........eeeeeee..hhhhhhh..ee.eeee...........ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rzi O    2 IQMTQSPSLSASVGDRVTITCRASQSISSYLNWYQQKPGKVPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTSHTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                  ||12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
                                  8|                                                                                                                                                                                                           
                                  10                                                                                                                                                                                                           

Chain P from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                         
               SCOP domains d1rzip1 P:1-113 Immunoglobulin heavy chain variable domain, VH                                                      d1rzip2 P:114-213 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                      SCOP domains
               CATH domains 1rziP01 P:1-113 Immunoglobulins                                                                                     1rziP02 P:114-213 Immunoglobulins                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee...eee......ee.eee.........eeeee.......eeeeee.......ee.......eeeeee....eeeeee...hhhhheeeeee............eeeee........eeee...........eeeeeeeeeee.....eeee.hhh....eee..........eeeeeeeeee.hhhhh..eeeeeeehhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1rzi P    1 QVQLLQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPVFGSANYAQKFQGRVTITADEATSTTYMELSSLRSEDTAVYFCAKGGHGMDVWGQGTTVTVASASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96|||    107       117       127       137       147       157       167       177       187       197       207      
                                                                              52A                            82A||            96|||                                                                                                                 
                                                                                                              82B|           100J||                                                                                                                 
                                                                                                               82C            100K|                                                                                                                 
                                                                                                                               100L                                                                                                                 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 32)

Asymmetric Unit

(-) CATH Domains  (1, 32)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
1a1rziA02A:108-211
1b1rziF02F:114-214
1c1rziB02B:114-213
1d1rziD02D:114-213
1e1rziH02H:114-213
1f1rziJ02J:114-213
1g1rziL02L:114-213
1h1rziN02N:114-213
1i1rziP02P:114-213
1j1rziL01L:1-113
1k1rziB01B:1-113
1l1rziD01D:1-113
1m1rziF01F:1-113
1n1rziH01H:1-113
1o1rziJ01J:1-113
1p1rziN01N:1-113
1q1rziP01P:1-113
1r1rziC02C:108-211
1s1rziE02E:108-211
1t1rziG02G:108-211
1u1rziI02I:108-211
1v1rziK02K:108-211
1w1rziM02M:108-211
1x1rziO02O:108-211
1y1rziA01A:2-107
1z1rziE01E:2-107
1aa1rziG01G:2-107
1ab1rziI01I:2-107
1ac1rziK01K:2-107
1ad1rziM01M:2-107
1ae1rziO01O:2-107
1af1rziC01C:1-107

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1RZI)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1RZI)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1rzi)
 
  Sites
(no "Sites" information available for 1rzi)
 
  Cis Peptide Bonds
    Glu B:148 - Pro B:149   [ RasMol ]  
    Glu D:148 - Pro D:149   [ RasMol ]  
    Glu F:148 - Pro F:149   [ RasMol ]  
    Glu H:148 - Pro H:149   [ RasMol ]  
    Glu J:148 - Pro J:149   [ RasMol ]  
    Glu L:148 - Pro L:149   [ RasMol ]  
    Glu N:148 - Pro N:149   [ RasMol ]  
    Glu P:148 - Pro P:149   [ RasMol ]  
    Phe B:146 - Pro B:147   [ RasMol ]  
    Phe D:146 - Pro D:147   [ RasMol ]  
    Phe F:146 - Pro F:147   [ RasMol ]  
    Phe H:146 - Pro H:147   [ RasMol ]  
    Phe J:146 - Pro J:147   [ RasMol ]  
    Phe L:146 - Pro L:147   [ RasMol ]  
    Phe N:146 - Pro N:147   [ RasMol ]  
    Phe P:146 - Pro P:147   [ RasMol ]  
    Ser C:7 - Pro C:8   [ RasMol ]  
    Ser E:7 - Pro E:8   [ RasMol ]  
    Ser G:7 - Pro G:8   [ RasMol ]  
    Ser I:7 - Pro I:8   [ RasMol ]  
    Ser K:7 - Pro K:8   [ RasMol ]  
    Ser M:7 - Pro M:8   [ RasMol ]  
    Ser O:7 - Pro O:8   [ RasMol ]  
    Tyr A:140 - Pro A:141   [ RasMol ]  
    Tyr C:140 - Pro C:141   [ RasMol ]  
    Tyr E:140 - Pro E:141   [ RasMol ]  
    Tyr G:140 - Pro G:141   [ RasMol ]  
    Tyr I:140 - Pro I:141   [ RasMol ]  
    Tyr K:140 - Pro K:141   [ RasMol ]  
    Tyr M:140 - Pro M:141   [ RasMol ]  
    Tyr O:140 - Pro O:141   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]
    Biological Unit 7  [ Jena3D ]
    Biological Unit 8  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1rzi
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1RZI)

(-) Related Entries Specified in the PDB File

1rz7 1rz8 1rzf 1rzg 1rzj 1rzk