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1RZI
Biol. Unit 5
Info
Asym.Unit (539 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (75 KB)
Biol.Unit 3 (75 KB)
Biol.Unit 4 (74 KB)
Biol.Unit 5 (74 KB)
Biol.Unit 6 (74 KB)
Biol.Unit 7 (75 KB)
Biol.Unit 8 (75 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN ANTI-HIV-1 GP120-REACTIVE ANTIBODY 47E FAB
Authors
:
C. C. Huang, M. Venturi, S. Majeed, M. J. Moore, S. Phogat, M. -Y. Zhang, D. S. Dimitrov, W. A. Hendrickson, J. Robinson, J. Sodroski, R. Wyatt, H. Choe, M. Farzan, P. D. Kwong
Date
:
24 Dec 03 (Deposition) - 03 Feb 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Biol. Unit 7: M,N (1x)
Biol. Unit 8: O,P (1x)
Keywords
:
Hiv-1; Gp120; Cd4I; Antibodies; Tyrosine Sulfation; Vh-Gene Usage, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. C. Huang, M. Venturi, S. Majeed, M. J. Moore, S. Phogat, M. -Y. Zhang, D. S. Dimitrov, W. A. Hendrickson, J. Robinson, J. Sodroski, R. Wyatt, H. Choe, M. Farzan, P. D. Kwong
Structural Basis Of Tyrosine Sulfation And Vh-Gene Usage In Antibodies That Recognize The Hiv Type 1 Coreceptor-Binding Site On Gp120
Proc. Natl. Acad. Sci. Usa V. 101 2706 2004
(for further references see the
PDB file header
)
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Hetero Components
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(4, 32)
Info
All SCOP Domains
1a: SCOP_d1rzib2 (B:114-213)
1b: SCOP_d1rzid2 (D:114-213)
1c: SCOP_d1rzif2 (F:114-214)
1d: SCOP_d1rzih2 (H:114-213)
1e: SCOP_d1rzij2 (J:114-213)
1f: SCOP_d1rzil2 (L:114-213)
1g: SCOP_d1rzin2 (N:114-213)
1h: SCOP_d1rzip2 (P:114-213)
2a: SCOP_d1rzia2 (A:108-213)
2b: SCOP_d1rzic2 (C:108-213)
2c: SCOP_d1rzie2 (E:108-213)
2d: SCOP_d1rzig2 (G:108-213)
2e: SCOP_d1rzii2 (I:108-213)
2f: SCOP_d1rzik2 (K:108-213)
2g: SCOP_d1rzim2 (M:108-213)
2h: SCOP_d1rzio2 (O:108-213)
3a: SCOP_d1rzib1 (B:1-113)
3b: SCOP_d1rzid1 (D:1-113)
3c: SCOP_d1rzif1 (F:1-113)
3d: SCOP_d1rzih1 (H:1-113)
3e: SCOP_d1rzij1 (J:1-113)
3f: SCOP_d1rzil1 (L:1-113)
3g: SCOP_d1rzin1 (N:1-113)
3h: SCOP_d1rzip1 (P:1-113)
4a: SCOP_d1rzia1 (A:2-107)
4b: SCOP_d1rzic1 (C:1-107)
4c: SCOP_d1rzie1 (E:2-107)
4d: SCOP_d1rzig1 (G:2-107)
4e: SCOP_d1rzii1 (I:2-107)
4f: SCOP_d1rzik1 (K:2-107)
4g: SCOP_d1rzim1 (M:2-107)
4h: SCOP_d1rzio1 (O:2-107)
View:
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Classes
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)
(
)
Folds
(
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(
)
Superfamilies
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
1a
d1rzib2
B:114-213
1b
d1rzid2
D:114-213
1c
d1rzif2
F:114-214
1d
d1rzih2
H:114-213
1e
d1rzij2
J:114-213
1f
d1rzil2
L:114-213
1g
d1rzin2
N:114-213
1h
d1rzip2
P:114-213
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Human (Homo sapiens) [TaxId: 9606]
(144)
2a
d1rzia2
A:108-213
2b
d1rzic2
C:108-213
2c
d1rzie2
E:108-213
2d
d1rzig2
G:108-213
2e
d1rzii2
I:108-213
2f
d1rzik2
K:108-213
2g
d1rzim2
M:108-213
2h
d1rzio2
O:108-213
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Human (Homo sapiens), cluster 1 [TaxId: 9606]
(37)
3a
d1rzib1
B:1-113
3b
d1rzid1
D:1-113
3c
d1rzif1
F:1-113
3d
d1rzih1
H:1-113
3e
d1rzij1
J:1-113
3f
d1rzil1
L:1-113
3g
d1rzin1
N:1-113
3h
d1rzip1
P:1-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Human (Homo sapiens), cluster 1 [TaxId: 9606]
(19)
4a
d1rzia1
A:2-107
4b
d1rzic1
C:1-107
4c
d1rzie1
E:2-107
4d
d1rzig1
G:2-107
4e
d1rzii1
I:2-107
4f
d1rzik1
K:2-107
4g
d1rzim1
M:2-107
4h
d1rzio1
O:2-107
[
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CATH Domains
(1, 32)
Info
all CATH domains
1a: CATH_1rziA02 (A:108-211)
1b: CATH_1rziF02 (F:114-214)
1c: CATH_1rziB02 (B:114-213)
1d: CATH_1rziD02 (D:114-213)
1e: CATH_1rziH02 (H:114-213)
1f: CATH_1rziJ02 (J:114-213)
1g: CATH_1rziL02 (L:114-213)
1h: CATH_1rziN02 (N:114-213)
1i: CATH_1rziP02 (P:114-213)
1j: CATH_1rziL01 (L:1-113)
1k: CATH_1rziB01 (B:1-113)
1l: CATH_1rziD01 (D:1-113)
1m: CATH_1rziF01 (F:1-113)
1n: CATH_1rziH01 (H:1-113)
1o: CATH_1rziJ01 (J:1-113)
1p: CATH_1rziN01 (N:1-113)
1q: CATH_1rziP01 (P:1-113)
1r: CATH_1rziC02 (C:108-211)
1s: CATH_1rziE02 (E:108-211)
1t: CATH_1rziG02 (G:108-211)
1u: CATH_1rziI02 (I:108-211)
1v: CATH_1rziK02 (K:108-211)
1w: CATH_1rziM02 (M:108-211)
1x: CATH_1rziO02 (O:108-211)
1y: CATH_1rziA01 (A:2-107)
1z: CATH_1rziE01 (E:2-107)
1aa: CATH_1rziG01 (G:2-107)
1ab: CATH_1rziI01 (I:2-107)
1ac: CATH_1rziK01 (K:2-107)
1ad: CATH_1rziM01 (M:2-107)
1ae: CATH_1rziO01 (O:2-107)
1af: CATH_1rziC01 (C:1-107)
View:
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)
(
)
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(
)
(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1rziA02
A:108-211
1b
1rziF02
F:114-214
1c
1rziB02
B:114-213
1d
1rziD02
D:114-213
1e
1rziH02
H:114-213
1f
1rziJ02
J:114-213
1g
1rziL02
L:114-213
1h
1rziN02
N:114-213
1i
1rziP02
P:114-213
1j
1rziL01
L:1-113
1k
1rziB01
B:1-113
1l
1rziD01
D:1-113
1m
1rziF01
F:1-113
1n
1rziH01
H:1-113
1o
1rziJ01
J:1-113
1p
1rziN01
N:1-113
1q
1rziP01
P:1-113
1r
1rziC02
C:108-211
1s
1rziE02
E:108-211
1t
1rziG02
G:108-211
1u
1rziI02
I:108-211
1v
1rziK02
K:108-211
1w
1rziM02
M:108-211
1x
1rziO02
O:108-211
1y
1rziA01
A:2-107
1z
1rziE01
E:2-107
1aa
1rziG01
G:2-107
1ab
1rziI01
I:2-107
1ac
1rziK01
K:2-107
1ad
1rziM01
M:2-107
1ae
1rziO01
O:2-107
1af
1rziC01
C:1-107
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Pfam Domains
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Asym.Unit (539 KB)
Header - Asym.Unit
Biol.Unit 1 (75 KB)
Header - Biol.Unit 1
Biol.Unit 2 (75 KB)
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Biol.Unit 3 (75 KB)
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Biol.Unit 4 (74 KB)
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