Chain H from PDB Type:PROTEIN Length:324
aligned with Q82500_9INFA | Q82500 from UniProtKB/TrEMBL Length:566
Alignment length:327
27 37 47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247 257 267 277 287 297 307 317 327 337
Q82500_9INFA 18 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGWLLGNPECDLLLTVSSWSYIVETSNSDNGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTRGVTAACPYAGASSFYRNLLWLVKKEXSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQSLYQNADAYVSVGSSKYDRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSESGIITSDAPVHDCDTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMVTGLRNIPSIQSR 344
SCOP domains d1rv0h_ H: Hemagglutinin SCOP domains
CATH domains 1rv0H01 H:5-46,H:277-327 1rv0H02 H:47-276 [code=3.90.209.20, no name defined] 1rv0H01 H:5-46,H:277-327 CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeee.......ee.......ee...eee.ee......eee......ee....hhhhhhhh...hhhhhhh.....eee...............hhhhhhhhhh.eeeeeee...hhhhhh.........eeeeee..eee....eee..........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee..eeeeee.....eee....eeeee..ee....ee.....ee......ee...ee......eee.......---.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1rv0 H 5 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGWLLGNPECDLLLTVSSWSYIVETSNSDNGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTRGVTAACPYAGASSFYRNLLWLVKKGNSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQSLYQNADAYVSVGSSKYDRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSGSGIITSDAPVHDCDTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIP---AR 327
14 24 34 |45 | 54 64 74 84 94 104 114 124 133A 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 | |
42| 49A 133A 325 326
44
Chain I from PDB Type:PROTEIN Length:160
aligned with Q82500_9INFA | Q82500 from UniProtKB/TrEMBL Length:566
Alignment length:160
354 364 374 384 394 404 414 424 434 444 454 464 474 484 494 504
Q82500_9INFA 345 GLFGAIAGFIEGGWTGLIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTVVGKEFNNLERRIKNLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKARSQLRNNAKEIGNGCFEFYHKCDDACMESVRNGTYDYP 504
SCOP domains d1rv0i_ I: Influenza hemagglutinin (stalk) SCOP domains
CATH domains 1rv0I00 I:501-660 [code=3.90.20.10, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....................eee..ee..ee..eehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..eeee....hhhhhhhhhh...... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1rv0 I 501 GLFGAIAGFIEGGWTGLIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIKNLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKARSQLRNNAKEIGNGCFEFYHKCDDACMESVRNGTYDYP 660
510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660
Chain J from PDB Type:PROTEIN Length:324
aligned with Q82500_9INFA | Q82500 from UniProtKB/TrEMBL Length:566
Alignment length:327
27 37 47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247 257 267 277 287 297 307 317 327 337
Q82500_9INFA 18 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGWLLGNPECDLLLTVSSWSYIVETSNSDNGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTRGVTAACPYAGASSFYRNLLWLVKKEXSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQSLYQNADAYVSVGSSKYDRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSESGIITSDAPVHDCDTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMVTGLRNIPSIQSR 344
SCOP domains d1rv0j_ J: Hemagglutinin SCOP domains
CATH domains 1rv0J01 J:5-46,J:277-327 1rv0J02 J:47-276 [code=3.90.209.20, no name defined] 1rv0J01 J:5-46,J:277-327 CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeee.......ee.......ee...eee.ee......eeee.....eeee..hhhhhhhhhhhhhhhhhh.....eee...............hhhhhhhhh..eeeeeee..................eeeeee..eee....eee..........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee..eeeeee.....eee....eeeeee.ee....ee.....ee......ee...ee......eee.......---.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1rv0 J 5 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGWLLGNPECDLLLTVSSWSYIVETSNSDNGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTRGVTAACPYAGASSFYRNLLWLVKKGNSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQSLYQNADAYVSVGSSKYDRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSGSGIITSDAPVHDCDTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIP---AR 327
14 24 34 |45 | 54 64 74 84 94 104 114 124 133A 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 | |
42| 49A 133A 325 326
44
Chain K from PDB Type:PROTEIN Length:160
aligned with Q82500_9INFA | Q82500 from UniProtKB/TrEMBL Length:566
Alignment length:160
354 364 374 384 394 404 414 424 434 444 454 464 474 484 494 504
Q82500_9INFA 345 GLFGAIAGFIEGGWTGLIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTVVGKEFNNLERRIKNLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKARSQLRNNAKEIGNGCFEFYHKCDDACMESVRNGTYDYP 504
SCOP domains d1rv0k_ K: Influenza hemagglutinin (stalk) SCOP domains
CATH domains 1rv0K00 K:501-660 [code=3.90.20.10, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....................eee..........eehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..eeee....hhhhhhhhhh...... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1rv0 K 501 GLFGAIAGFIEGGWTGLIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIKNLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKARSQLRNNAKEIGNGCFEFYHKCDDACMESVRNGTYDYP 660
510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660
Chain L from PDB Type:PROTEIN Length:324
aligned with Q82500_9INFA | Q82500 from UniProtKB/TrEMBL Length:566
Alignment length:327
27 37 47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247 257 267 277 287 297 307 317 327 337
Q82500_9INFA 18 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGWLLGNPECDLLLTVSSWSYIVETSNSDNGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTRGVTAACPYAGASSFYRNLLWLVKKEXSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQSLYQNADAYVSVGSSKYDRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSESGIITSDAPVHDCDTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMVTGLRNIPSIQSR 344
SCOP domains d1rv0l_ L: Hemagglutinin SCOP domains
CATH domains 1rv0L01 L:5-46,L:277-327 1rv0L02 L:47-276 [code=3.90.209.20, no name defined] 1rv0L01 L:5-46,L:277-327 CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeee.......ee.......ee...eee.ee......eee......ee....hhhhhhhhhhhhhhhh.......eee...............hhhhhhhhhh.eeeeeee..................eeeeee..eee....eee..........eeeeee.....eeeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee..eeeeee.....eee....eeeee..ee....ee.....ee......ee...ee......eee.......---.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1rv0 L 5 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGWLLGNPECDLLLTVSSWSYIVETSNSDNGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTRGVTAACPYAGASSFYRNLLWLVKKGNSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQSLYQNADAYVSVGSSKYDRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSGSGIITSDAPVHDCDTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIP---AR 327
14 24 34 |45 | 54 64 74 84 94 104 114 124 133A 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 | |
42| 49A 133A 325 326
44
Chain M from PDB Type:PROTEIN Length:160
aligned with Q82500_9INFA | Q82500 from UniProtKB/TrEMBL Length:566
Alignment length:160
354 364 374 384 394 404 414 424 434 444 454 464 474 484 494 504
Q82500_9INFA 345 GLFGAIAGFIEGGWTGLIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTVVGKEFNNLERRIKNLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKARSQLRNNAKEIGNGCFEFYHKCDDACMESVRNGTYDYP 504
SCOP domains d1rv0m_ M: Influenza hemagglutinin (stalk) SCOP domains
CATH domains 1rv0M00 M:501-660 [code=3.90.20.10, no name defined] CATH domains
Pfam domains (1) Hemagglutinin-1rv0M01 M:501-660 Pfam domains (1)
Pfam domains (2) Hemagglutinin-1rv0M02 M:501-660 Pfam domains (2)
Pfam domains (3) Hemagglutinin-1rv0M03 M:501-660 Pfam domains (3)
Pfam domains (4) Hemagglutinin-1rv0M04 M:501-660 Pfam domains (4)
Pfam domains (5) Hemagglutinin-1rv0M05 M:501-660 Pfam domains (5)
Pfam domains (6) Hemagglutinin-1rv0M06 M:501-660 Pfam domains (6)
Sec.struct. author .....................eee..ee..ee..eehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..eeee....hhhhhhhhhh...... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1rv0 M 501 GLFGAIAGFIEGGWTGLIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIKNLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKARSQLRNNAKEIGNGCFEFYHKCDDACMESVRNGTYDYP 660
510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660
Legend: |
|
→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |