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(-) Description

Title :  1930 SWINE H1 HEMAGGLUTININ
 
Authors :  J. J. Skehel, S. J. Gamblin, L. F. Haire, R. J. Russell, D. J. Stevens, B. X N. Vasisht, D. A. Steinhauer, R. S. Daniels
Date :  12 Dec 03  (Deposition) - 30 Mar 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  H,I,J,K,L,M
Keywords :  Hemagglutinin, Influenza A Virus, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. J. Gamblin, L. F. Haire, R. J. Russell, D. J. Stevens, B. Xiao, Y. Ha, N. Vasisht, D. A. Steinhauer, R. S. Daniels, A. Elliot, D. C. Wiley, J. J. Skehel
The Structure And Receptor Binding Properties Of The 1918 Influenza Hemagglutinin.
Science V. 303 1838 2004
PubMed-ID: 14764886  |  Reference-DOI: 10.1126/SCIENCE.1093155

(-) Compounds

Molecule 1 - HEMAGGLUTININ
    Chains: H, J, L
    Organism Scientific: INFLUENZA A VIRUS (A/SWINE/IOWA/15/30(H1N1))
    Organism Taxid: 260809
    Other Details: HEMAGGLUTININ HA1 CHAIN
    Other Details - Source: BROMELAIN DIGESTION
    Strain: A-SWINE-IOWA-15-30 (H1N1)
 
Molecule 2 - HEMAGGLUTININ
    Chains: I, K, M
    Organism Scientific: INFLUENZA A VIRUS (A/SWINE/IOWA/15/30(H1N1))
    Organism Taxid: 260809
    Other Details: HEMAGGLUTININ HA2 CHAIN
    Other Details - Source: BROMELAIN DIGESTION
    Strain: A-SWINE-IOWA-15-30 (H1N1)

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : HIJKLM

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
2NDG5Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN H:68 , PRO H:69 , GLU H:70 , ASN H:91 , CYS H:94 , ARG H:224 , NAG H:641BINDING SITE FOR RESIDUE NDG H 640
2AC2SOFTWAREARG H:224 , NDG H:640BINDING SITE FOR RESIDUE NAG H 641
3AC3SOFTWAREASN H:279 , ASN H:290BINDING SITE FOR RESIDUE NAG H 642
4AC4SOFTWAREASN J:68 , GLU J:70 , ASN J:91 , CYS J:94 , ARG J:224 , NDG J:644BINDING SITE FOR RESIDUE NDG J 643
5AC5SOFTWARENDG J:643BINDING SITE FOR RESIDUE NDG J 644
6AC6SOFTWAREASN J:279 , ASN J:290BINDING SITE FOR RESIDUE NAG J 645
7AC7SOFTWAREASN L:68 , PRO L:69 , GLU L:70 , ASN L:91 , CYS L:94 , ARG L:224 , NAG L:647BINDING SITE FOR RESIDUE NDG L 646
8AC8SOFTWAREARG L:224 , NDG L:646BINDING SITE FOR RESIDUE NAG L 647
9AC9SOFTWAREASN L:279 , ASN L:290 , HOH L:738BINDING SITE FOR RESIDUE NDG L 648

(-) SS Bonds  (18, 18)

Asymmetric/Biological Unit
No.Residues
1H:8 -I:637
2H:47 -H:278
3H:59 -H:71
4H:94 -H:139
5H:282 -H:306
6I:644 -I:648
7J:8 -K:637
8J:47 -J:278
9J:59 -J:71
10J:94 -J:139
11J:282 -J:306
12K:644 -K:648
13L:8 -M:637
14L:47 -L:278
15L:59 -L:71
16L:94 -L:139
17L:282 -L:306
18M:644 -M:648

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1RUY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1RUY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1RUY)

(-) Exons   (0, 0)

(no "Exon" information available for 1RUY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:324
 aligned with HEMA_I30A0 | Q9WCD9 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:327
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
          HEMA_I30A0     18 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGXXLGNPECDLLLTVSSWSYIVETSNSDNGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTRGVTAACPYAGASSFYRNLLWLVKKENSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQSLYQNADAYVSVGSSKYDRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSESGIITSDAPVHDCDTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMVTGLRNIPSIQSR  344
               SCOP domains d1ruyh_ H: Hemagglutinin                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1ruyH01 H:5-46,H:277-327                 1ruyH02 H:47-276  [code=3.90.209.20, no name defined]                                                                                                                                                                                   1ruyH01 H:5-46,H:277-327                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.......ee.......ee...eee.ee......eee......eeee..hhhhhhhhhhhhhhhhhh.....eee...............hhhhhhhhhh.eeeeeee..................eeeeee..eee....eee..........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee..eeeeee.....eee....eeeee..eee..eee.....ee......ee...ee......eee.......---.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ruy H    5 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGWLLGNPECDLLLTVSSWSYIVETPNSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHNTNKGVTAACPYAGASSFYRNLLWLVKKGNSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQNLYQNADAYVSVGSSKYNRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSGSGIIISNAPVHDCNTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIP---AR  327
                                    14        24        34       |45    |   54        64        74        84        94       104       114       124      133A       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323 |   | 
                                                                42|   49A                                                                                 133A                                                                                                                                                                                             325 326 
                                                                 44                                                                                                                                                                                                                                                                                                


Chain H from PDB  Type:PROTEIN  Length:324
 aligned with Q82500_9INFA | Q82500 from UniProtKB/TrEMBL  Length:566

    Alignment length:327
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
        Q82500_9INFA     18 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGWLLGNPECDLLLTVSSWSYIVETSNSDNGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTRGVTAACPYAGASSFYRNLLWLVKKEXSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQSLYQNADAYVSVGSSKYDRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSESGIITSDAPVHDCDTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMVTGLRNIPSIQSR  344
               SCOP domains d1ruyh_ H: Hemagglutinin                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1ruyH01 H:5-46,H:277-327                 1ruyH02 H:47-276  [code=3.90.209.20, no name defined]                                                                                                                                                                                   1ruyH01 H:5-46,H:277-327                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.......ee.......ee...eee.ee......eee......eeee..hhhhhhhhhhhhhhhhhh.....eee...............hhhhhhhhhh.eeeeeee..................eeeeee..eee....eee..........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee..eeeeee.....eee....eeeee..eee..eee.....ee......ee...ee......eee.......---.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ruy H    5 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGWLLGNPECDLLLTVSSWSYIVETPNSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHNTNKGVTAACPYAGASSFYRNLLWLVKKGNSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQNLYQNADAYVSVGSSKYNRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSGSGIIISNAPVHDCNTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIP---AR  327
                                    14        24        34       |45    |   54        64        74        84        94       104       114       124      133A       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323 |   | 
                                                                42|   49A                                                                                 133A                                                                                                                                                                                             325 326 
                                                                 44                                                                                                                                                                                                                                                                                                


Chain I from PDB  Type:PROTEIN  Length:160
 aligned with HEMA_I79A4 | P18875 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:160
                                   354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
          HEMA_I79A4    345 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAINGITNKVNSVIEKMNTQFTAVGKEFNKLEKRMENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNNECMESVKNGTYDYP  504
               SCOP domains d1ruyi_ I: Influenza hemagglutinin (stalk)                                                                                                                       SCOP domains
               CATH domains 1ruyI00 I:501-660  [code=3.90.20.10, no name defined]                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eee..........eehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..eeee....hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ruy I  501 GLFGAIAGFIEGGWTGLIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNKLEKRIENLNNKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNECMESVRNGTYDYP  660
                                   510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660


Chain I from PDB  Type:PROTEIN  Length:160
 aligned with P88836_9INFA | P88836 from UniProtKB/TrEMBL  Length:566

    Alignment length:160
                                   354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
        P88836_9INFA    345 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNKLEKRMENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNNECMESVKNGTYDYP  504
               SCOP domains d1ruyi_ I: Influenza hemagglutinin (stalk)                                                                                                                       SCOP domains
               CATH domains 1ruyI00 I:501-660  [code=3.90.20.10, no name defined]                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eee..........eehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..eeee....hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ruy I  501 GLFGAIAGFIEGGWTGLIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNKLEKRIENLNNKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNECMESVRNGTYDYP  660
                                   510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660


Chain J from PDB  Type:PROTEIN  Length:324
 aligned with HEMA_I30A0 | Q9WCD9 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:327
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
          HEMA_I30A0     18 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGXXLGNPECDLLLTVSSWSYIVETSNSDNGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTRGVTAACPYAGASSFYRNLLWLVKKENSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQSLYQNADAYVSVGSSKYDRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSESGIITSDAPVHDCDTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMVTGLRNIPSIQSR  344
               SCOP domains d1ruyj_ J: Hemagglutinin                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1ruyJ01 J:5-46,J:277-327                 1ruyJ02 J:47-276  [code=3.90.209.20, no name defined]                                                                                                                                                                                   1ruyJ01 J:5-46,J:277-327                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.......ee.......ee...eee.ee......eee......eeee..hhhhhhhhhhhhhhhhhh.....eee...............hhhhhhhhhh.eeeeeee..................eeeeee..eee....eee..........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee..eeeeee.....eee....eeeee..eee..eee.....ee......ee...ee......eee.......---.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ruy J    5 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGWLLGNPECDLLLTVSSWSYIVETPNSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHNTNKGVTAACPYAGASSFYRNLLWLVKKGNSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQNLYQNADAYVSVGSSKYNRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSGSGIIISNAPVHDCNTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIP---AR  327
                                    14        24        34       |45    |   54        64        74        84        94       104       114       124      133A       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323 |   | 
                                                                42|   49A                                                                                 133A                                                                                                                                                                                             325 326 
                                                                 44                                                                                                                                                                                                                                                                                                


Chain J from PDB  Type:PROTEIN  Length:324
 aligned with Q82500_9INFA | Q82500 from UniProtKB/TrEMBL  Length:566

    Alignment length:327
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
        Q82500_9INFA     18 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGWLLGNPECDLLLTVSSWSYIVETSNSDNGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTRGVTAACPYAGASSFYRNLLWLVKKEXSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQSLYQNADAYVSVGSSKYDRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSESGIITSDAPVHDCDTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMVTGLRNIPSIQSR  344
               SCOP domains d1ruyj_ J: Hemagglutinin                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1ruyJ01 J:5-46,J:277-327                 1ruyJ02 J:47-276  [code=3.90.209.20, no name defined]                                                                                                                                                                                   1ruyJ01 J:5-46,J:277-327                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.......ee.......ee...eee.ee......eee......eeee..hhhhhhhhhhhhhhhhhh.....eee...............hhhhhhhhhh.eeeeeee..................eeeeee..eee....eee..........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee..eeeeee.....eee....eeeee..eee..eee.....ee......ee...ee......eee.......---.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ruy J    5 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGWLLGNPECDLLLTVSSWSYIVETPNSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHNTNKGVTAACPYAGASSFYRNLLWLVKKGNSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQNLYQNADAYVSVGSSKYNRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSGSGIIISNAPVHDCNTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIP---AR  327
                                    14        24        34       |45    |   54        64        74        84        94       104       114       124      133A       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323 |   | 
                                                                42|   49A                                                                                 133A                                                                                                                                                                                             325 326 
                                                                 44                                                                                                                                                                                                                                                                                                


Chain K from PDB  Type:PROTEIN  Length:160
 aligned with HEMA_I79A4 | P18875 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:160
                                   354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
          HEMA_I79A4    345 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAINGITNKVNSVIEKMNTQFTAVGKEFNKLEKRMENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNNECMESVKNGTYDYP  504
               SCOP domains d1ruyk_ K: Influenza hemagglutinin (stalk)                                                                                                                       SCOP domains
               CATH domains 1ruyK00 K:501-660  [code=3.90.20.10, no name defined]                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eee..........eehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..eeee....hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ruy K  501 GLFGAIAGFIEGGWTGLIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNKLEKRIENLNNKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNECMESVRNGTYDYP  660
                                   510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660


Chain K from PDB  Type:PROTEIN  Length:160
 aligned with P88836_9INFA | P88836 from UniProtKB/TrEMBL  Length:566

    Alignment length:160
                                   354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
        P88836_9INFA    345 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNKLEKRMENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNNECMESVKNGTYDYP  504
               SCOP domains d1ruyk_ K: Influenza hemagglutinin (stalk)                                                                                                                       SCOP domains
               CATH domains 1ruyK00 K:501-660  [code=3.90.20.10, no name defined]                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eee..........eehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..eeee....hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ruy K  501 GLFGAIAGFIEGGWTGLIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNKLEKRIENLNNKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNECMESVRNGTYDYP  660
                                   510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660


Chain L from PDB  Type:PROTEIN  Length:324
 aligned with HEMA_I30A0 | Q9WCD9 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:327
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
          HEMA_I30A0     18 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGXXLGNPECDLLLTVSSWSYIVETSNSDNGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTRGVTAACPYAGASSFYRNLLWLVKKENSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQSLYQNADAYVSVGSSKYDRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSESGIITSDAPVHDCDTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMVTGLRNIPSIQSR  344
               SCOP domains d1ruyl_ L: Hemagglutinin                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1ruyL01 L:5-46,L:277-327                 1ruyL02 L:47-276  [code=3.90.209.20, no name defined]                                                                                                                                                                                   1ruyL01 L:5-46,L:277-327                               CATH domains
           Pfam domains (1) --Hemagglutinin-1ruyL01 L:7-325                                                                                                                                                                                                                                                                                                      -- Pfam domains (1)
           Pfam domains (2) --Hemagglutinin-1ruyL02 L:7-325                                                                                                                                                                                                                                                                                                      -- Pfam domains (2)
           Pfam domains (3) --Hemagglutinin-1ruyL03 L:7-325                                                                                                                                                                                                                                                                                                      -- Pfam domains (3)
         Sec.struct. author .eeeeee.......ee.......ee...eee.ee......eee......eeee..hhhhhhhhhhhhhhhh.......eee...............hhhhhhhhhh.eeeeeee..................eeeeee..eee....eee..........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee..eeeeee.....eee....eeeee..eee..eee.....ee......ee...ee......eee.......---.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ruy L    5 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGWLLGNPECDLLLTVSSWSYIVETPNSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHNTNKGVTAACPYAGASSFYRNLLWLVKKGNSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQNLYQNADAYVSVGSSKYNRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSGSGIIISNAPVHDCNTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIP---AR  327
                                    14        24        34       |45    |   54        64        74        84        94       104       114       124      133A       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323 |   | 
                                                                42|   49A                                                                                 133A                                                                                                                                                                                             325 326 
                                                                 44                                                                                                                                                                                                                                                                                                


Chain L from PDB  Type:PROTEIN  Length:324
 aligned with Q82500_9INFA | Q82500 from UniProtKB/TrEMBL  Length:566

    Alignment length:327
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
        Q82500_9INFA     18 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGWLLGNPECDLLLTVSSWSYIVETSNSDNGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTRGVTAACPYAGASSFYRNLLWLVKKEXSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQSLYQNADAYVSVGSSKYDRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSESGIITSDAPVHDCDTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMVTGLRNIPSIQSR  344
               SCOP domains d1ruyl_ L: Hemagglutinin                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1ruyL01 L:5-46,L:277-327                 1ruyL02 L:47-276  [code=3.90.209.20, no name defined]                                                                                                                                                                                   1ruyL01 L:5-46,L:277-327                               CATH domains
           Pfam domains (1) --Hemagglutinin-1ruyL01 L:7-325                                                                                                                                                                                                                                                                                                      -- Pfam domains (1)
           Pfam domains (2) --Hemagglutinin-1ruyL02 L:7-325                                                                                                                                                                                                                                                                                                      -- Pfam domains (2)
           Pfam domains (3) --Hemagglutinin-1ruyL03 L:7-325                                                                                                                                                                                                                                                                                                      -- Pfam domains (3)
         Sec.struct. author .eeeeee.......ee.......ee...eee.ee......eee......eeee..hhhhhhhhhhhhhhhh.......eee...............hhhhhhhhhh.eeeeeee..................eeeeee..eee....eee..........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee..eeeeee.....eee....eeeee..eee..eee.....ee......ee...ee......eee.......---.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ruy L    5 DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLGKCNIAGWLLGNPECDLLLTVSSWSYIVETPNSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHNTNKGVTAACPYAGASSFYRNLLWLVKKGNSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQNLYQNADAYVSVGSSKYNRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSGSGIIISNAPVHDCNTKCQTPHGAINSSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIP---AR  327
                                    14        24        34       |45    |   54        64        74        84        94       104       114       124      133A       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323 |   | 
                                                                42|   49A                                                                                 133A                                                                                                                                                                                             325 326 
                                                                 44                                                                                                                                                                                                                                                                                                


Chain M from PDB  Type:PROTEIN  Length:160
 aligned with HEMA_I79A4 | P18875 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:160
                                   354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
          HEMA_I79A4    345 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAINGITNKVNSVIEKMNTQFTAVGKEFNKLEKRMENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNNECMESVKNGTYDYP  504
               SCOP domains d1ruym_ M: Influenza hemagglutinin (stalk)                                                                                                                       SCOP domains
               CATH domains 1ruyM00 M:501-660  [code=3.90.20.10, no name defined]                                                                                                            CATH domains
           Pfam domains (1) Hemagglutinin-1ruyM01 M:501-660                                                                                                                                  Pfam domains (1)
           Pfam domains (2) Hemagglutinin-1ruyM02 M:501-660                                                                                                                                  Pfam domains (2)
           Pfam domains (3) Hemagglutinin-1ruyM03 M:501-660                                                                                                                                  Pfam domains (3)
         Sec.struct. author .....................eee..........eehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..eeee....hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ruy M  501 GLFGAIAGFIEGGWTGLIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNKLEKRIENLNNKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNECMESVRNGTYDYP  660
                                   510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660


Chain M from PDB  Type:PROTEIN  Length:160
 aligned with P88836_9INFA | P88836 from UniProtKB/TrEMBL  Length:566

    Alignment length:160
                                   354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
        P88836_9INFA    345 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNKLEKRMENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNNECMESVKNGTYDYP  504
               SCOP domains d1ruym_ M: Influenza hemagglutinin (stalk)                                                                                                                       SCOP domains
               CATH domains 1ruyM00 M:501-660  [code=3.90.20.10, no name defined]                                                                                                            CATH domains
           Pfam domains (1) Hemagglutinin-1ruyM01 M:501-660                                                                                                                                  Pfam domains (1)
           Pfam domains (2) Hemagglutinin-1ruyM02 M:501-660                                                                                                                                  Pfam domains (2)
           Pfam domains (3) Hemagglutinin-1ruyM03 M:501-660                                                                                                                                  Pfam domains (3)
         Sec.struct. author .....................eee..........eehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..eeee....hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ruy M  501 GLFGAIAGFIEGGWTGLIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNKLEKRIENLNNKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNECMESVRNGTYDYP  660
                                   510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Coiled coil proteins (689)

(-) CATH Domains  (3, 9)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Hemagglutinin] (58)

(-) Gene Ontology  (17, 68)

Asymmetric/Biological Unit(hide GO term definitions)
Chain H,J,L   (HEMA_I30A0 | Q9WCD9)
molecular function
    GO:0046789    host cell surface receptor binding    Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
    GO:0075512    clathrin-dependent endocytosis of virus by host cell    Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0039654    fusion of virus membrane with host endosome membrane    Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
    GO:0019064    fusion of virus membrane with host plasma membrane    Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0019065    receptor-mediated endocytosis of virus by host cell    Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

Chain H,J,L   (Q82500_9INFA | Q82500)
molecular function
    GO:0046789    host cell surface receptor binding    Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
    GO:0075512    clathrin-dependent endocytosis of virus by host cell    Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0039654    fusion of virus membrane with host endosome membrane    Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
    GO:0019064    fusion of virus membrane with host plasma membrane    Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0019065    receptor-mediated endocytosis of virus by host cell    Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

Chain I,K,M   (HEMA_I79A4 | P18875)
molecular function
    GO:0046789    host cell surface receptor binding    Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
    GO:0075512    clathrin-dependent endocytosis of virus by host cell    Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0039654    fusion of virus membrane with host endosome membrane    Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
    GO:0019064    fusion of virus membrane with host plasma membrane    Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0019065    receptor-mediated endocytosis of virus by host cell    Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

Chain I,K,M   (P88836_9INFA | P88836)
molecular function
    GO:0046789    host cell surface receptor binding    Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
    GO:0075512    clathrin-dependent endocytosis of virus by host cell    Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0039654    fusion of virus membrane with host endosome membrane    Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
    GO:0019064    fusion of virus membrane with host plasma membrane    Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0019065    receptor-mediated endocytosis of virus by host cell    Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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  1ruy
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  HEMA_I79A4 | P18875
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  P88836_9INFA | P88836
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  Q82500_9INFA | Q82500
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    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  P88836_9INFA | P88836
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q82500_9INFA | Q82500
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q82500_9INFA | Q82500: 1rv0 1rvt

(-) Related Entries Specified in the PDB File

1ru7 1934 HUMAN H1 HEMAGGLUTININ
1ruz 1918 H1 HEMAGGLUTININ
1rv0 1930 SWINE H1 HEMAGGLUTININ COMPLEXED WITH LSTA
1rvt 1930 H1 HEMAGGLUTININ IN COMPLEX WITH LSTC
1rvx 1934 H1 HEMAGGLUTININ IN COMPLEX WITH LSTA
1rvz 1934 H1 HEMAGGLUTININ IN COMPLEX WITH LSTC