1RP1 - JenaLib

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Title :   DOG PANCREATIC LIPASE RELATED PROTEIN 1

Authors :   A. Roussel, C. Cambillau

Date :   02 Apr 98 (Deposition) - 17 Jun 98 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A

Keywords :   Hydrolase, Lipid Degradation, Pancreatic Lipase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Roussel, J. De Caro, S. Bezzine, L. Gastinel, A. De Caro, F. Carriere, S. Leydier, R. Verger, C. Cambillau
Reactivation Of The Totally Inactive Pancreatic Lipase Rp1 By Structure-Predicted Point Mutations.
Proteins V. 32 523 1998
PubMed-ID: 9726421 | Reference-DOI: 10.1002/(SICI)1097-0134(19980901)32:4<523::AID-PROT 10>3.3.CO;2-9

Molecule 1 - PANCREATIC LIPASE RELATED PROTEIN 1
	Chains	:	A
	EC Number	:	3.1.1.3
	Organ	:	PANCREAS
	Organism Common	:	DOG
	Organism Scientific	:	CANIS LUPUS FAMILIARIS
	Organism Taxid	:	9615
	Secretion	:	PANCREATIC JUICE
	Strain	:	FAMILIARIS

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 2)

No.	Name	Count	Type	Full Name
1	CA	1	Ligand/Ion	CALCIUM ION
2	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:138 , ILE A:375 , HOH A:930	BINDING SITE FOR RESIDUE NAG A 500
2	AC2	SOFTWARE	GLU A:32 , GLU A:187 , ARG A:190 , ASP A:192 , ASP A:195 , HOH A:722	BINDING SITE FOR RESIDUE CA A 501

Asymmetric/Biological Unit

No.	Residues
1	A:4	-	A:10
2	A:90	-	A:101
3	A:237	-	A:261
4	A:285	-	A:296
5	A:299	-	A:304
6	A:433	-	A:449

Asymmetric/Biological Unit

No.	Residues
1	Glu A:15	-	Pro A:16
2	Ile A:210	-	Pro A:211
3	Phe A:297	-	Pro A:298

(no "SAP(SNP)/Variant" information available for 1RP1)

Asymmetric/Biological Unit (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LIPASE_SER	PS00120	Lipases, serine active site.	LIPR1_CANLF	165-174	1	A:146-155
2	PLAT	PS50095	PLAT domain profile.	LIPR1_CANLF	356-467	1	A:338-449

Asymmetric/Biological Unit (11, 11)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENSCAFT00000018834	1a	ENSCAFE00000129594	chr28:30168805-30168837	33	LIPR1_CANLF	-	0	0	-	-
1.2	ENSCAFT00000018834	2	ENSCAFE00000129597	chr28:30168955-30169003	49	LIPR1_CANLF	1-17	17	0	-	-
1.3	ENSCAFT00000018834	3	ENSCAFE00000129603	chr28:30169588-30169742	155	LIPR1_CANLF	17-68	52	1	A:1-50	51
1.4	ENSCAFT00000018834	4	ENSCAFE00000129612	chr28:30170267-30170392	126	LIPR1_CANLF	69-110	42	1	A:51-91 (gaps)	44
1.5	ENSCAFT00000018834	5	ENSCAFE00000129624	chr28:30172229-30172363	135	LIPR1_CANLF	111-155	45	1	A:92-136	45
1.6	ENSCAFT00000018834	6	ENSCAFE00000129634	chr28:30173399-30173507	109	LIPR1_CANLF	156-192	37	1	A:137-174 (gaps)	38
1.7	ENSCAFT00000018834	7	ENSCAFE00000129641	chr28:30175156-30175275	120	LIPR1_CANLF	192-232	41	1	A:174-214	41
1.8	ENSCAFT00000018834	8	ENSCAFE00000129648	chr28:30175375-30175494	120	LIPR1_CANLF	232-272	41	1	A:214-254	41
1.9	ENSCAFT00000018834	9	ENSCAFE00000129658	chr28:30176950-30177068	119	LIPR1_CANLF	272-311	40	1	A:254-293	40
1.10	ENSCAFT00000018834	10	ENSCAFE00000129667	chr28:30177825-30177954	130	LIPR1_CANLF	312-355	44	1	A:294-337 (gaps)	44
1.11	ENSCAFT00000018834	11	ENSCAFE00000129678	chr28:30179908-30180016	109	LIPR1_CANLF	355-391	37	1	A:337-373	37
1.12	ENSCAFT00000018834	12	ENSCAFE00000129690	chr28:30180852-30181019	168	LIPR1_CANLF	391-447	57	1	A:373-430 (gaps)	58
1.13b	ENSCAFT00000018834	13b	ENSCAFE00000129697	chr28:30184038-30184157	120	LIPR1_CANLF	447-467	21	1	A:430-449 (gaps)	23

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:441
 aligned with LIPR1_CANLF | P06857 from UniProtKB/Swiss-Prot  Length:467

    Alignment length:450
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467
          LIPR1_CANLF    18 KEVCYEQIGCFSDAEPWAGTAIRPLKVLPWSPERIGTRFLLYTNKNPNNFQTLLPSDPSTIEASNFQTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQTSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRTPGLGRITGLDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGEEMPGCKKNALSQIVDLDGIWEGTRDFVACNHLRSYKYYSESILNPDGFASYPCASYRAFESNKCFPCPDQGCPQMGHYADKFAVKTSDETQKYFLNTGDSSNFARWRYGVSITLSGKRATGQAKVALFGSKGNTHQFNIFKGILKPGSTHSNEFDAKLDVGTIEKVKFLWNNNVVNPTFPKVGAAKITVQKGEEKTVHSFCSESTVREDVLLTLTPC 467
               SCOP domains d1rp1a2 A:1-336 Pancreatic lipase, N-terminal domain                                                                                                                                                                                                                                                                                             d1rp1a1 A:337-449 Pancreatic lipase, C-terminal domain                                                            SCOP domains
               CATH domains 1rp1A01 A:1-337  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                                                                                             1rp1A02 A:338-447 Lipoxygenase-1                                                                              -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee...eeee.........................eeeeee.......eee....hhhhh........eeeeee..........hhhhhhhhhhh...eeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhh......eeeee......................eeeee.....................eeeee...................hhhhh........hhhhhhhhhhhhhhh............hhhhh.......................-------.eeee..........eeeeeeeeeee..eeeeeeeeeee.......eeeeeeee....eeeeeeee......eeeeeeeeee.--......eeeeeeeeee......eeee..........eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------LIPASE_SER-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLAT  PDB: A:338-449 UniProt: 356-467                                                                            PROSITE
           Transcript 1 (1) Exon 1.3  PDB: A:1-50 UniProt: 17-68 [INCOMPLETE]  Exon 1.4  PDB: A:51-91 (gaps)             Exon 1.5  PDB: A:92-136 UniProt: 111-155     Exon 1.6  PDB: A:137-174 (gaps)      ---------------------------------------Exon 1.8  PDB: A:214-254 UniProt: 232-272---------------------------------------Exon 1.10  PDB: A:294-337 (gaps)            -----------------------------------Exon 1.12  PDB: A:373-430 (gaps) UniProt: 391-447        -------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.7  PDB: A:174-214 UniProt: 192-232---------------------------------------Exon 1.9  PDB: A:254-293                -------------------------------------------Exon 1.11  PDB: A:337-373            -------------------------------------------------------Exon 1.13b            Transcript 1 (2)
                 1rp1 A   1 KEVCYEQIGCFSDAEPWAGTAIRPLKVLPWSPERIGTRFLLYTNKNPNNFQTLLPSDPSTIGASNFQTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQTSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRTPGLGRITGLDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGEEMPGCKKNALSQIVDLDGIWEGTRDFVACNHLRSYKYYSESILNPDGFASYPCASYRAFESNKCFPCPDQGCPQMGHYADKFA-------QKYFLNTGDSSNFARWRYGVSITLSGKRATGQAKVALFGSKGNTHQFNIFKGILKPGSTHSNEFDAKLDVGTIEKVKFLWNNN--NPTFPKVGAAKITVQKGEEKTVHSFCSESTVREDVLLTLTPC 449
                                    10        20        30|       39        49    ||| 58        68        78        88        98       108       118       128       138       148       158       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309     |   -   |   329       339       349       359       369       379       389       399    || 410       420       430||     439       449
                                                        30A                      54||                                                                                                            166|                                                                                                                                                315     323                                                                              404|  |                  430||                  
                                                                                 700|                                                                                                             168                                                                                                                                                                                                                                          406  |                   701|                  
                                                                                   55                                                                                                                                                                                                                                                                                                                                                             409                    431

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1820, no name defined] (692)

Dog (Canis lupus familiaris) (2)

1rp1A01

A:1-337

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Lipoxygenase-1 (46)

Homologous Superfamily: Lipoxygenase-1 (44)

Dog (Canis lupus familiaris) (1)

1rp1A02

A:338-447

(no "Pfam Domain" information available for 1RP1)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (LIPR1_CANLF | P06857)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0052689	carboxylic ester hydrolase activity	Catalysis of the hydrolysis of a carboxylic ester bond.
	GO:0016298	lipase activity	Catalysis of the hydrolysis of a lipid or phospholipid.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0016042	lipid catabolic process	The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric/Biological Unit
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		Phe A:297 - Pro A:298	[ RasMol ]

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	1rp1
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 2)

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SS Bonds (6, 6)

Cis Peptide Bonds (3, 3)

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Exons (11, 11)

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