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Getting 'Exon' information from database.
1RP1
Asym. Unit
Info
Asym.Unit (81 KB)
Biol.Unit 1 (77 KB)
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(1)
Title
:
DOG PANCREATIC LIPASE RELATED PROTEIN 1
Authors
:
A. Roussel, C. Cambillau
Date
:
02 Apr 98 (Deposition) - 17 Jun 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Lipid Degradation, Pancreatic Lipase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Roussel, J. De Caro, S. Bezzine, L. Gastinel, A. De Caro, F. Carriere, S. Leydier, R. Verger, C. Cambillau
Reactivation Of The Totally Inactive Pancreatic Lipase Rp1 By Structure-Predicted Point Mutations.
Proteins V. 32 523 1998
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:138 , ILE A:375 , HOH A:930
BINDING SITE FOR RESIDUE NAG A 500
2
AC2
SOFTWARE
GLU A:32 , GLU A:187 , ARG A:190 , ASP A:192 , ASP A:195 , HOH A:722
BINDING SITE FOR RESIDUE CA A 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LIPASE_SER (A:146-155)
2: PLAT (A:338-449)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPASE_SER
PS00120
Lipases, serine active site.
LIPR1_CANLF
165-174
1
A:146-155
2
PLAT
PS50095
PLAT domain profile.
LIPR1_CANLF
356-467
1
A:338-449
[
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]
Exons
(11, 11)
Info
All Exons
Exon 1.3 (A:1-50)
Exon 1.4 (A:51-91 (gaps))
Exon 1.5 (A:92-136)
Exon 1.6 (A:137-174 (gaps))
Exon 1.7 (A:174-214)
Exon 1.8 (A:214-254)
Exon 1.9 (A:254-293)
Exon 1.10 (A:294-337 (gaps))
Exon 1.11 (A:337-373)
Exon 1.12 (A:373-430 (gaps))
Exon 1.13b (A:430-449 (gaps))
View:
Select:
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All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13b
12: Boundary 1.13b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSCAFT00000018834
1a
ENSCAFE00000129594
chr28:
30168805-30168837
33
LIPR1_CANLF
-
0
0
-
-
1.2
ENSCAFT00000018834
2
ENSCAFE00000129597
chr28:
30168955-30169003
49
LIPR1_CANLF
1-17
17
0
-
-
1.3
ENSCAFT00000018834
3
ENSCAFE00000129603
chr28:
30169588-30169742
155
LIPR1_CANLF
17-68
52
1
A:1-50
51
1.4
ENSCAFT00000018834
4
ENSCAFE00000129612
chr28:
30170267-30170392
126
LIPR1_CANLF
69-110
42
1
A:51-91 (gaps)
44
1.5
ENSCAFT00000018834
5
ENSCAFE00000129624
chr28:
30172229-30172363
135
LIPR1_CANLF
111-155
45
1
A:92-136
45
1.6
ENSCAFT00000018834
6
ENSCAFE00000129634
chr28:
30173399-30173507
109
LIPR1_CANLF
156-192
37
1
A:137-174 (gaps)
38
1.7
ENSCAFT00000018834
7
ENSCAFE00000129641
chr28:
30175156-30175275
120
LIPR1_CANLF
192-232
41
1
A:174-214
41
1.8
ENSCAFT00000018834
8
ENSCAFE00000129648
chr28:
30175375-30175494
120
LIPR1_CANLF
232-272
41
1
A:214-254
41
1.9
ENSCAFT00000018834
9
ENSCAFE00000129658
chr28:
30176950-30177068
119
LIPR1_CANLF
272-311
40
1
A:254-293
40
1.10
ENSCAFT00000018834
10
ENSCAFE00000129667
chr28:
30177825-30177954
130
LIPR1_CANLF
312-355
44
1
A:294-337 (gaps)
44
1.11
ENSCAFT00000018834
11
ENSCAFE00000129678
chr28:
30179908-30180016
109
LIPR1_CANLF
355-391
37
1
A:337-373
37
1.12
ENSCAFT00000018834
12
ENSCAFE00000129690
chr28:
30180852-30181019
168
LIPR1_CANLF
391-447
57
1
A:373-430 (gaps)
58
1.13b
ENSCAFT00000018834
13b
ENSCAFE00000129697
chr28:
30184038-30184157
120
LIPR1_CANLF
447-467
21
1
A:430-449 (gaps)
23
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1rp1a1 (A:337-449)
2a: SCOP_d1rp1a2 (A:1-336)
View:
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Classes
(
)
(
)
Folds
(
)
(
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Superfamilies
(
)
(
)
Families
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Superfamily
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Family
:
Colipase-binding domain
(8)
Protein domain
:
Pancreatic lipase, C-terminal domain
(8)
Dog (Canis familiaris) [TaxId: 9615]
(1)
1a
d1rp1a1
A:337-449
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Pancreatic lipase, N-terminal domain
(12)
Protein domain
:
Pancreatic lipase, N-terminal domain
(8)
Dog (Canis familiaris) [TaxId: 9615]
(1)
2a
d1rp1a2
A:1-336
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1rp1A01 (A:1-337)
2a: CATH_1rp1A02 (A:338-447)
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)
Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Dog (Canis lupus familiaris)
(2)
1a
1rp1A01
A:1-337
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Lipoxygenase-1
(46)
Homologous Superfamily
:
Lipoxygenase-1
(44)
Dog (Canis lupus familiaris)
(1)
2a
1rp1A02
A:338-447
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
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Protein
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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