1RM4 - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF RECOMBINANT PHOTOSYNTHETIC GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE A4 ISOFORM, COMPLEXED WITH NADP

Authors :   F. Sparla, S. Fermani, G. Falini, A. Ripamonti, P. Sabatino, P. Pupillo

Date :   27 Nov 03 (Deposition) - 27 Jul 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,O
Biol. Unit 1: A,B  (2x)
Biol. Unit 2: O  (4x)

Keywords :   Rossmann Fold, Gapdh-Nadp Complex, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Sparla, S. Fermani, G. Falini, M. Zaffagnini, A. Ripamonti, P. Sabatino, P. Pupillo, P. Trost
Coenzyme Site-Directed Mutants Of Photosynthetic A(4)-Gapdh Show Selectively Reduced Nadph-Dependent Catalysis, Similar To Regulatory Ab-Gapdh Inhibited By Oxidized Thioredoxin
J. Mol. Biol. V. 340 1025 2004
PubMed-ID: 15236965 | Reference-DOI: 10.1016/J.JMB.2004.06.005
(for further references see the PDB file header)

Molecule 1 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A
	Chains	:	O, A, B
	EC Number	:	1.2.1.13
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-28
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	GAPA
	Organ	:	LEAVES
	Organelle	:	CHLOROPLASTS
	Organism Common	:	SPINACH
	Organism Scientific	:	SPINACIA OLERACEA
	Organism Taxid	:	3562
	Synonym	:	PHOTOSYNTHETIC GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE

		1	2	3
Asymmetric Unit	:	A	B	O
Biological Unit 1 (2x)	:	A	B
Biological Unit 2 (4x)	:			O

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 11)

No.	Name	Count	Type	Full Name
1	NDP	3	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
2	SO4	8	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 16)

No.	Name	Count	Type	Full Name
1	NDP	4	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
2	SO4	12	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 12)

No.	Name	Count	Type	Full Name
1	NDP	4	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
2	SO4	8	Ligand/Ion	SULFATE ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR O:179 , ASP O:181 , ARG O:195 , ARG O:231 , NDP O:7335 , HOH O:7357 , HOH O:7453 , HOH O:7460 , HOH O:7594	BINDING SITE FOR RESIDUE SO4 O 7338
02	AC2	SOFTWARE	SER O:148 , CYS O:149 , THR O:150 , THR O:208 , HOH O:7391	BINDING SITE FOR RESIDUE SO4 O 7339
03	AC3	SOFTWARE	THR A:179 , ASP A:181 , ARG A:195 , ARG A:231 , NDP A:1335 , HOH A:1395	BINDING SITE FOR RESIDUE SO4 A 1338
04	AC4	SOFTWARE	SER A:148 , THR A:208 , GLY A:209 , ALA A:210 , HOH A:1356 , HOH A:1396	BINDING SITE FOR RESIDUE SO4 A 1339
05	AC5	SOFTWARE	THR B:179 , ASP B:181 , ARG B:195 , ARG B:231 , NDP B:2335 , HOH B:2402	BINDING SITE FOR RESIDUE SO4 B 2338
06	AC6	SOFTWARE	SER B:148 , THR B:150 , THR B:208 , GLY B:209 , ALA B:210 , HOH B:2388	BINDING SITE FOR RESIDUE SO4 B 2339
07	AC7	SOFTWARE	GLY A:36 , VAL A:37 , LYS A:38 , HOH A:1341	BINDING SITE FOR RESIDUE SO4 A 901
08	AC8	SOFTWARE	LEU A:201 , ARG A:284 , HOH A:1459 , HOH A:1464 , ARG B:284 , HOH B:2366	BINDING SITE FOR RESIDUE SO4 B 902
09	AC9	SOFTWARE	GLY O:7 , PHE O:8 , GLY O:9 , ARG O:10 , ILE O:11 , ASN O:31 , ASP O:76 , ARG O:77 , GLY O:95 , THR O:96 , GLY O:97 , PHE O:99 , THR O:119 , ALA O:120 , ARG O:183 , SER O:188 , ASN O:313 , GLU O:314 , TYR O:317 , SO4 O:7338 , HOH O:7348 , HOH O:7367 , HOH O:7372 , HOH O:7424 , HOH O:7430 , HOH O:7532 , HOH O:7533 , HOH O:7535 , HOH O:7570	BINDING SITE FOR RESIDUE NDP O 7335
10	BC1	SOFTWARE	GLY A:7 , ARG A:10 , ILE A:11 , ASN A:31 , THR A:33 , ARG A:77 , GLY A:95 , THR A:96 , GLY A:97 , PHE A:99 , THR A:119 , ALA A:120 , ASN A:313 , TYR A:317 , SO4 A:1338 , HOH A:1343 , HOH A:1346 , HOH A:1348 , HOH A:1353 , HOH A:1358 , HOH A:1395 , HOH A:1417 , HOH A:1425 , HOH A:1457 , HOH A:1479 , HOH A:1480 , SER B:188	BINDING SITE FOR RESIDUE NDP A 1335
11	BC2	SOFTWARE	SER A:188 , GLY B:7 , GLY B:9 , ARG B:10 , ILE B:11 , ARG B:77 , GLY B:95 , THR B:96 , GLY B:97 , THR B:119 , ALA B:120 , ASN B:313 , GLU B:314 , TYR B:317 , SO4 B:2338 , HOH B:2359 , HOH B:2368 , HOH B:2402 , HOH B:2404 , HOH B:2442	BINDING SITE FOR RESIDUE NDP B 2335

Asymmetric Unit

No.	Residues
1	A:200	-	B:200
2	O:200	-	O:200

(no "Cis Peptide Bond" information available for 1RM4)

(no "SAP(SNP)/Variant" information available for 1RM4)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GAPDH	PS00071	Glyceraldehyde 3-phosphate dehydrogenase active site.	G3PA_SPIOL	216-223	3	A:147-154 B:147-154 O:147-154

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GAPDH	PS00071	Glyceraldehyde 3-phosphate dehydrogenase active site.	G3PA_SPIOL	216-223	4	A:147-154 B:147-154 -

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GAPDH	PS00071	Glyceraldehyde 3-phosphate dehydrogenase active site.	G3PA_SPIOL	216-223	4	- - O:147-154

(no "Exon" information available for 1RM4)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:336
 aligned with G3PA_SPIOL | P19866 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:336
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395      
          G3PA_SPIOL     66 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ  401
               SCOP domains -d1rm4a1 A:1-148,A:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                             d1rm4a2 A:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d1rm4a1               SCOP domains
               CATH domains -1rm4A01 A:1-147,A:314-333 NAD(P)-binding Rossmann-like Domain                                                                                         1rm4A02 A:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            1rm4A01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhh..........eee....eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh....eee...............hhhhh.....eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee.........................eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhh......eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1rm4 A    0 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ  333
                                     9       18A|       27      ||38        48        58  |     67        77        87        97       107       117     | 126       136       146       156       166       176       186 ||    197       207       217       227       237       247       257       267       277       287       297       307       317       327      
                                             18A|              34|                      60A                                                           122A                                                               188|                                                                                                                                               
                                              18B               36                                                                                                                                                        190

Chain B from PDB  Type:PROTEIN  Length:336
 aligned with G3PA_SPIOL | P19866 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:336
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395      
          G3PA_SPIOL     66 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ  401
               SCOP domains -d1rm4b1 B:1-148,B:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                             d1rm4b2 B:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d1rm4b1               SCOP domains
               CATH domains -1rm4B01 B:1-147,B:314-333 NAD(P)-binding Rossmann-like Domain                                                                                         1rm4B02 B:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            1rm4B01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhh..........eeee...eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee...............hhhhh.....eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee.........................eeee.hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhh......eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1rm4 B    0 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ  333
                                     9       18A|       27      ||38        48        58  |     67        77        87        97       107       117     | 126       136       146       156       166       176       186 ||    197       207       217       227       237       247       257       267       277       287       297       307       317       327      
                                             18A|              34|                      60A                                                           122A                                                               188|                                                                                                                                               
                                              18B               36                                                                                                                                                        190

Chain O from PDB  Type:PROTEIN  Length:336
 aligned with G3PA_SPIOL | P19866 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:336
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395      
          G3PA_SPIOL     66 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ  401
               SCOP domains -d1rm4o1 O:1-148,O:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                             d1rm4o2 O:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d1rm4o1               SCOP domains
               CATH domains -1rm4O01 O:1-147,O:314-333 NAD(P)-binding Rossmann-like Domain                                                                                         1rm4O02 O:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            1rm4O01              CATH domains
           Pfam domains (1) -Gp_dh_N-1rm4O04 O:1-149                                                                                                                                 ----Gp_dh_C-1rm4O01 O:154-311                                                                                                                                    ---------------------- Pfam domains (1)
           Pfam domains (2) -Gp_dh_N-1rm4O05 O:1-149                                                                                                                                 ----Gp_dh_C-1rm4O02 O:154-311                                                                                                                                    ---------------------- Pfam domains (2)
           Pfam domains (3) -Gp_dh_N-1rm4O06 O:1-149                                                                                                                                 ----Gp_dh_C-1rm4O03 O:154-311                                                                                                                                    ---------------------- Pfam domains (3)
         Sec.struct. author .eeeeee..hhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhh..........eee....eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee...............hhhhh.....eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee.........................eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhh......eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1rm4 O    0 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ  333
                                     9       18A|       27      ||38        48        58  |     67        77        87        97       107       117     | 126       136       146       156       166       176       186 ||    197       207       217       227       237       247       257       267       277       287       297       307       317       327      
                                             18A|              34|                      60A                                                           122A                                                               188|                                                                                                                                               
                                              18B               36                                                                                                                                                        190

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Dihydrodipicolinate Reductase; domain 2 (182)

Homologous Superfamily: Dihydrodipicolinate Reductase; domain 2 (178)

Spinach (Spinacia oleracea) (8)

1a	1rm4A02	A:148-313
1b	1rm4B02	B:148-313
1c	1rm4O02	O:148-313

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Spinach (Spinacia oleracea) (10)

2a	1rm4A01	A:1-147,A:314-333
2b	1rm4O01	O:1-147,O:314-333
2c	1rm4B01	B:1-147,B:314-333

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: GADPH_aa-bio_dh (59)

Family: Gp_dh_C (38)

Spinacia oleracea (Spinach) (5)

1a	Gp_dh_C-1rm4O01	O:154-311
1b	Gp_dh_C-1rm4O02	O:154-311
1c	Gp_dh_C-1rm4O03	O:154-311

Clan: NADP_Rossmann (1239)

Family: Gp_dh_N (38)

Spinacia oleracea (Spinach) (5)

2a	Gp_dh_N-1rm4O04	O:1-149
2b	Gp_dh_N-1rm4O05	O:1-149
2c	Gp_dh_N-1rm4O06	O:1-149

Asymmetric Unit(hide GO term definitions)

Chain A,B,O (G3PA_SPIOL | P19866)

molecular function
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0047100	glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	Catalysis of the reaction: phosphate + NADP+ + glyceraldehyde-3-phosphate = NADPH + 3-phospho-D-glyceroyl-phosphate.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
	GO:0006006	glucose metabolic process	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0019253	reductive pentose-phosphate cycle	The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		NDP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1rm4)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1rm4
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	G3PA_SPIOL \| P19866
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.2.1.13
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	G3PA_SPIOL \| P19866
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	G3PA_SPIOL \| P19866	:	1jn0 1nbo 1rm3 1rm5 2hki 2pkq 2pkr

1jn0	NATIVE A4 ISOFORM OF PHOTOSYNTHETIC GLYCERALDEHYDE-3- PHOSPHATE DEHYDROGENASE COMPLEXED WITH NADP
1nbo	RECOMBINANT A4 ISOFORM OF PHOTOSYNTHETIC GLYCERALDEHYDE-3- PHOSPHATE DEHYDROGENASE COMPLEXED WITH NAD
1rm3
1rm5

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 11)

Sites (11, 11)

SS Bonds (2, 2)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 3)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 6)

CATH Domains (2, 6)

Pfam Domains (2, 6)

Gene Ontology (10, 10)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File