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(-) Description

Title :  ASPARTATE TRANSCARBAMYLASE (ATCASE) OF ESCHERICHIA COLI: A NEW CRYSTALLINE R STATE BOUND TO PALA, OR TO PRODUCT ANALOGUES PHOSPHATE AND CITRATE
 
Authors :  J. Huang, W. N. Lipscomb
Date :  19 Sep 03  (Deposition) - 08 Jun 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Aspartate Transcarbamylase, Aspartate Carbamoyltransferase, Product Analogue, Citrate, Phosphate, Atcase-Citrate- Phosphate Complex, R State (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Huang, W. N. Lipscomb
Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A New Crystalline R-State Bound To Pala, Or To Product Analogues Citrate And Phosphate
Biochemistry V. 43 6415 2004
PubMed-ID: 15157075  |  Reference-DOI: 10.1021/BI030213B
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC CHAIN
    Chains: A, B, C, D, E, F
    EC Number: 2.1.3.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEK54
    Expression System Strain: EK1104
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PYRB OR B4245 OR C5345 OR Z5856 OR ECS5222 OR SF4245 OR S4507
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: ASPARTATE TRANSCARBAMYLASE, ATCASE
 
Molecule 2 - ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN
    Chains: G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEK54
    Expression System Strain: EK1104
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PYRI OR B4244 OR C5344 OR Z5855 OR ECS5221
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 18)

Asymmetric/Biological Unit (3, 18)
No.NameCountTypeFull Name
1FLC6Ligand/IonCITRATE ANION
2PO46Ligand/IonPHOSPHATE ION
3ZN6Ligand/IonZINC ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:55 , ARG A:105 , HIS A:134 , GLN A:137 , ARG A:167 , ARG A:229 , GLN A:231 , PRO A:266 , PRO A:268 , PO4 A:3001 , LYS B:84BINDING SITE FOR RESIDUE FLC A 2001
02AC2SOFTWARETHR B:55 , ARG B:105 , HIS B:134 , GLN B:137 , ARG B:167 , THR B:168 , ARG B:229 , GLN B:231 , PRO B:266 , PRO B:268 , PO4 B:3002 , LYS C:84BINDING SITE FOR RESIDUE FLC B 2002
03AC3SOFTWARELYS A:84 , THR C:55 , ARG C:105 , HIS C:134 , GLN C:137 , ARG C:167 , THR C:168 , ARG C:229 , GLN C:231 , PRO C:266 , PRO C:268 , PO4 C:3003BINDING SITE FOR RESIDUE FLC C 2003
04AC4SOFTWARETHR D:55 , ARG D:105 , ALA D:127 , HIS D:134 , GLN D:137 , ARG D:167 , THR D:168 , GLN D:231 , PRO D:266 , PO4 D:3004 , LYS F:84BINDING SITE FOR RESIDUE FLC D 2004
05AC5SOFTWARELYS D:84 , THR E:55 , ARG E:105 , HIS E:134 , GLN E:137 , ARG E:167 , THR E:168 , ARG E:229 , GLN E:231 , PRO E:266 , PRO E:268 , PO4 E:3005BINDING SITE FOR RESIDUE FLC E 2005
06AC6SOFTWARELYS E:84 , THR F:55 , ARG F:105 , HIS F:134 , GLN F:137 , ARG F:167 , THR F:168 , ARG F:229 , GLN F:231 , PRO F:266 , PRO F:268 , PO4 F:3006BINDING SITE FOR RESIDUE FLC F 2006
07AC7SOFTWARECYS G:109 , CYS G:114 , CYS G:138 , CYS G:141BINDING SITE FOR RESIDUE ZN G 1001
08AC8SOFTWARECYS H:109 , CYS H:114 , CYS H:138 , CYS H:141BINDING SITE FOR RESIDUE ZN H 1002
09AC9SOFTWARECYS I:109 , CYS I:114 , CYS I:138 , CYS I:141BINDING SITE FOR RESIDUE ZN I 1003
10BC1SOFTWARECYS J:109 , CYS J:114 , CYS J:138 , CYS J:141BINDING SITE FOR RESIDUE ZN J 1004
11BC2SOFTWARECYS K:109 , CYS K:114 , CYS K:138 , CYS K:141BINDING SITE FOR RESIDUE ZN K 1005
12BC3SOFTWARECYS L:109 , CYS L:114 , CYS L:138 , CYS L:141BINDING SITE FOR RESIDUE ZN L 1006
13BC4SOFTWARESER A:52 , THR A:53 , ARG A:54 , THR A:55 , ARG A:105 , PRO A:268 , FLC A:2001 , SER B:80 , LYS B:84BINDING SITE FOR RESIDUE PO4 A 3001
14BC5SOFTWARESER B:52 , THR B:53 , ARG B:54 , THR B:55 , ARG B:105 , PRO B:268 , FLC B:2002 , SER C:80 , LYS C:84BINDING SITE FOR RESIDUE PO4 B 3002
15BC6SOFTWARESER A:80 , LYS A:84 , SER C:52 , THR C:53 , ARG C:54 , THR C:55 , ARG C:105 , PRO C:268 , FLC C:2003BINDING SITE FOR RESIDUE PO4 C 3003
16BC7SOFTWAREALA D:51 , SER D:52 , THR D:53 , ARG D:54 , THR D:55 , ARG D:105 , PRO D:268 , FLC D:2004 , SER F:80 , LYS F:84BINDING SITE FOR RESIDUE PO4 D 3004
17BC8SOFTWARESER D:80 , LYS D:84 , SER E:52 , THR E:53 , ARG E:54 , THR E:55 , ARG E:105 , PRO E:268 , FLC E:2005BINDING SITE FOR RESIDUE PO4 E 3005
18BC9SOFTWARESER E:80 , LYS E:84 , SER F:52 , THR F:53 , ARG F:54 , THR F:55 , ARG F:105 , FLC F:2006BINDING SITE FOR RESIDUE PO4 F 3006

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1H:138 -H:141
2I:109 -I:114
3J:109 -J:114
4K:138 -K:141
5L:109 -L:138
6L:114 -L:141

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1R0B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1R0B)

(-) PROSITE Motifs  (1, 6)

Asymmetric/Biological Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CARBAMOYLTRANSFERASEPS00097 Aspartate and ornithine carbamoyltransferases signature.PYRB_ECOLI49-56
 
 
 
 
 		  6A:48-55
B:48-55
C:48-55
D:48-55
E:48-55
F:48-55

(-) Exons   (0, 0)

(no "Exon" information available for 1R0B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:310
 aligned with PYRB_ECOLI | P0A786 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:310
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
           PYRB_ECOLI     2 ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL 311
               SCOP domains d1r0ba1 A:1-150 Aspartate carbamoyltransferase catalytic subunit                                                                                      d1r0ba2 A:151-310 Aspartate carbamoyltransferase catalytic subunit                                                                                               SCOP domains
               CATH domains 1r0bA01 A:1-133,A:292-310  [code=3.40.50.1370, no name defined]                                                                      1r0bA02 A:134-291  [code=3.40.50.1370, no name defined]                                                                                                       1r0bA01             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeee.hhhhhhhhhhh.hhhhhhhhhh....eeeeee...hhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhh.....eeee......hhhhhhhhhhhh.....eeeee.hhhhh.hhhhhhhhhhhh.eeeee..hhhhhh...eee.........hhhhhhhh......hhhhhhhh....eee.........hhhhh.....hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------CARBAMOY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r0b A   1 ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL 310
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310


Chain B from PDB  Type:PROTEIN  Length:310
 aligned with PYRB_ECOLI | P0A786 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:310
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
           PYRB_ECOLI     2 ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL 311
               SCOP domains d1r0bb1 B:1-150 Aspartate carbamoyltransferase catalytic subunit                                                                                      d1r0bb2 B:151-310 Aspartate carbamoyltransferase catalytic subunit                                                                                               SCOP domains
               CATH domains 1r0bB01 B:1-133,B:292-310  [code=3.40.50.1370, no name defined]                                                                      1r0bB02 B:134-291  [code=3.40.50.1370, no name defined]                                                                                                       1r0bB01             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhh............eeeeee....hhhhhhhhhhhhhh..eeeee.hhhhh.......hhhhhhhhhh....eeeeee...hhhhhhhh......eeeeee....hhhhhhhhhhhhhhhh.....eeeee......hhhhhhhhhhhh....eeeeee.hhhhh.hhhhhhhhhhh...eeee...........eee.........hhhhh..........hhhhh......eee.....................hhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------CARBAMOY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r0b B   1 ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL 310
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310


Chain C from PDB  Type:PROTEIN  Length:310
 aligned with PYRB_ECOLI | P0A786 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:310
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
           PYRB_ECOLI     2 ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL 311
               SCOP domains d1r0bc1 C:1-150 Aspartate carbamoyltransferase catalytic subunit                                                                                      d1r0bc2 C:151-310 Aspartate carbamoyltransferase catalytic subunit                                                                                               SCOP domains
               CATH domains 1r0bC01 C:1-133,C:292-310  [code=3.40.50.1370, no name defined]                                                                      1r0bC02 C:134-291  [code=3.40.50.1370, no name defined]                                                                                                       1r0bC01             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhh.........eeeeee....hhhhhhhhhhhhh...eeeee.hhhhh.......hhhhhhhhhh....eeeeee...hhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhh.....eeee......hhhhhhhhhhhh.....eeeee.hhhhh.hhhhhhhhhhhh.eeeee.hhhhhhhhh.eee.........hhhhhhhhh.....hhhhhh......eee.........hhhhh.....hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------CARBAMOY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r0b C   1 ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL 310
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310


Chain D from PDB  Type:PROTEIN  Length:310
 aligned with PYRB_ECOLI | P0A786 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:310
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
           PYRB_ECOLI     2 ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL 311
               SCOP domains d1r0bd1 D:1-150 Aspartate carbamoyltransferase catalytic subunit                                                                                      d1r0bd2 D:151-310 Aspartate carbamoyltransferase catalytic subunit                                                                                               SCOP domains
               CATH domains 1r0bD01 D:1-133,D:292-310  [code=3.40.50.1370, no name defined]                                                                      1r0bD02 D:134-291  [code=3.40.50.1370, no name defined]                                                                                                       1r0bD01             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhh.........eeeeee....hhhhhhhhhhhhhh..eeeee.hhhhhhhhhh..hhhhhhhhhhhhh..eeeee...hhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhh.....eeee......hhhhhhhhhhhh.....eeee..hhhhh.hhhhhhhhhhhh..eee..hhhhhhh...eee....hhhhhhhhhhhhhh.....hhhhh...................hhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------CARBAMOY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r0b D   1 ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL 310
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310


Chain E from PDB  Type:PROTEIN  Length:310
 aligned with PYRB_ECOLI | P0A786 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:310
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
           PYRB_ECOLI     2 ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL 311
               SCOP domains d1r0be1 E:1-150 Aspartate carbamoyltransferase catalytic subunit                                                                                      d1r0be2 E:151-310 Aspartate carbamoyltransferase catalytic subunit                                                                                               SCOP domains
               CATH domains 1r0bE01 E:1-133,E:292-310  [code=3.40.50.1370, no name defined]                                                                      1r0bE02 E:134-291  [code=3.40.50.1370, no name defined]                                                                                                       1r0bE01             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhh.........eeeeee....hhhhhhhhhhhhhh..eeeee.hhhhhhhhhh..hhhhhhhhhh....eeeeee...hhhhhhh.......eeeeee....hhhhhhhhhhhhhhhhh.....eeee......hhhhhhhhhhhh.....eeee..hhhhh.hhhhhhhhhhhh.eeee..hhhhh.....eee.........hhhhhhhhh.....hhhhhh......eee.........hhhhh.......hhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------CARBAMOY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r0b E   1 ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL 310
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310


Chain F from PDB  Type:PROTEIN  Length:310
 aligned with PYRB_ECOLI | P0A786 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:310
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
           PYRB_ECOLI     2 ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL 311
               SCOP domains d1r0bf1 F:1-150 Aspartate carbamoyltransferase catalytic subunit                                                                                      d1r0bf2 F:151-310 Aspartate carbamoyltransferase catalytic subunit                                                                                               SCOP domains
               CATH domains 1r0bF01 F:1-133,F:292-310  [code=3.40.50.1370, no name defined]                                                                      1r0bF02 F:134-291  [code=3.40.50.1370, no name defined]                                                                                                       1r0bF01             CATH domains
           Pfam domains (1) ------OTCace_N-1r0bF07 F:7-148                                                                                                                      ----OTCace-1r0bF01 F:153-303                                                                                                                               ------- Pfam domains (1)
           Pfam domains (2) ------OTCace_N-1r0bF08 F:7-148                                                                                                                      ----OTCace-1r0bF02 F:153-303                                                                                                                               ------- Pfam domains (2)
           Pfam domains (3) ------OTCace_N-1r0bF09 F:7-148                                                                                                                      ----OTCace-1r0bF03 F:153-303                                                                                                                               ------- Pfam domains (3)
           Pfam domains (4) ------OTCace_N-1r0bF10 F:7-148                                                                                                                      ----OTCace-1r0bF04 F:153-303                                                                                                                               ------- Pfam domains (4)
           Pfam domains (5) ------OTCace_N-1r0bF11 F:7-148                                                                                                                      ----OTCace-1r0bF05 F:153-303                                                                                                                               ------- Pfam domains (5)
           Pfam domains (6) ------OTCace_N-1r0bF12 F:7-148                                                                                                                      ----OTCace-1r0bF06 F:153-303                                                                                                                               ------- Pfam domains (6)
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeee.hhhhhhhhhh..hhhhhhhhhh....eeeeee...hhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhh....eeeeee.hhhhh.hhhhhhhhhhhh.eeee............eee....hhhhhhhhhhhhh......hhhhhh......eee.........hhhhh.....hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------CARBAMOY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r0b F   1 ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL 310
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310


Chain G from PDB  Type:PROTEIN  Length:153
 aligned with PYRI_ECOLI | P0A7F3 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
           PYRI_ECOLI     1 MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN 153
               SCOP domains d1r0bg1 G:1-100 Aspartate carbamoyltransferase                                                      d1r0bg2 G:101-153                                     SCOP domains
               CATH domains -------1r0bG01 G:8-100  [code=3.30.70.140, no name defined]                                         1r0bG02 G:101-153  [code=2.30.30.20, no name defined] CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................ee..hhhhhhhhh........eeeeeeeee...eeeeeeee.....hhhhhhhhh..........ee..ee..........eee.........hhhhh.....eeeee......eeee.....eee.hhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r0b G   1 MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN 153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   


Chain H from PDB  Type:PROTEIN  Length:153
 aligned with PYRI_ECOLI | P0A7F3 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
           PYRI_ECOLI     1 MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN 153
               SCOP domains d1r0bh1 H:1-100 Aspartate carbamoyltransferase                                                      d1r0bh2 H:101-153                                     SCOP domains
               CATH domains -------1r0bH01 H:8-100  [code=3.30.70.140, no name defined]                                         1r0bH02 H:101-153  [code=2.30.30.20, no name defined] CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............ee...ee..hhhhhhhhh........eeeeeeee.....eeeeeee.......hhhhhhhhh........ee..ee..........eee...................eee..ee..eeeeee.....eee.hhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r0b H   1 MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN 153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   


Chain I from PDB  Type:PROTEIN  Length:153
 aligned with PYRI_ECOLI | P0A7F3 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
           PYRI_ECOLI     1 MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN 153
               SCOP domains d1r0bi1 I:1-100 Aspartate carbamoyltransferase                                                      d1r0bi2 I:101-153                                     SCOP domains
               CATH domains -------1r0bI01 I:8-100  [code=3.30.70.140, no name defined]                                         1r0bI02 I:101-153  [code=2.30.30.20, no name defined] CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeeee..hhhhhhh..........eeeeeee.......eeeeee.....hhhhhhh.........eeeee..eee.....................hhhhh......eeeeee..eeeeee.....eee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r0b I   1 MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN 153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   


Chain J from PDB  Type:PROTEIN  Length:153
 aligned with PYRI_ECOLI | P0A7F3 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
           PYRI_ECOLI     1 MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN 153
               SCOP domains d1r0bj1 J:1-100 Aspartate carbamoyltransferase                                                      d1r0bj2 J:101-153                                     SCOP domains
               CATH domains --------1r0bJ01 J:9-100  [code=3.30.70.140, no name defined]                                        1r0bJ02 J:101-153  [code=2.30.30.20, no name defined] CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................ee.....hhhhhhhhhh........eeeeeeee.....eeeee.......hhhhhhhhh.......ee...........................................ee....eeee......eee.hhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r0b J   1 MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN 153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   


Chain K from PDB  Type:PROTEIN  Length:153
 aligned with PYRI_ECOLI | P0A7F3 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
           PYRI_ECOLI     1 MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN 153
               SCOP domains d1r0bk1 K:1-100 Aspartate carbamoyltransferase                                                      d1r0bk2 K:101-153                                     SCOP domains
               CATH domains -------1r0bK01 K:8-100  [code=3.30.70.140, no name defined]                                         1r0bK02 K:101-153  [code=2.30.30.20, no name defined] CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeee...hhhhhhhhhhhhhh...eeeeeee.......eeeeeee....hhhhhhhhhhh....eee.ee..ee..........eee..ee...............eeeee......eeee......ee....ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r0b K   1 MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN 153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   


Chain L from PDB  Type:PROTEIN  Length:153
 aligned with PYRI_ECOLI | P0A7F3 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
           PYRI_ECOLI     1 MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN 153
               SCOP domains d1r0bl1 L:1-100 Aspartate carbamoyltransferase                                                      d1r0bl2 L:101-153                                     SCOP domains
               CATH domains -------1r0bL01 L:8-100  [code=3.30.70.140, no name defined]                                         1r0bL02 L:101-153  [code=2.30.30.20, no name defined] CATH domains
           Pfam domains (1) ---PyrI-1r0bL01 L:4-99                                                                             -PyrI_C-1r0bL07 L:101-152                            - Pfam domains (1)
           Pfam domains (2) ---PyrI-1r0bL02 L:4-99                                                                             -PyrI_C-1r0bL08 L:101-152                            - Pfam domains (2)
           Pfam domains (3) ---PyrI-1r0bL03 L:4-99                                                                             -PyrI_C-1r0bL09 L:101-152                            - Pfam domains (3)
           Pfam domains (4) ---PyrI-1r0bL04 L:4-99                                                                             -PyrI_C-1r0bL10 L:101-152                            - Pfam domains (4)
           Pfam domains (5) ---PyrI-1r0bL05 L:4-99                                                                             -PyrI_C-1r0bL11 L:101-152                            - Pfam domains (5)
           Pfam domains (6) ---PyrI-1r0bL06 L:4-99                                                                             -PyrI_C-1r0bL12 L:101-152                            - Pfam domains (6)
         Sec.struct. author ..........................................eeeeee.......eee...........hhhhh............................ee.........hhhhh.....ee.........eee......eee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r0b L   1 MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN 153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 24)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Class: Small proteins (3458)

(-) CATH Domains  (3, 24)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: [code=3.40.50.1370, no name defined] (91)
(-)
Escherichia coli. Organism_taxid: 562. (22)
2a1r0bA02A:134-291
2b1r0bB02B:134-291
2c1r0bC02C:134-291
2d1r0bD02D:134-291
2e1r0bE02E:134-291
2f1r0bF02F:134-291
2g1r0bA01A:1-133,A:292-310
2h1r0bB01B:1-133,B:292-310
2i1r0bC01C:1-133,C:292-310
2j1r0bD01D:1-133,D:292-310
2k1r0bE01E:1-133,E:292-310
2l1r0bF01F:1-133,F:292-310
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (4, 24)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: OTCace] (48)
(-)
Family: OTCace (48)
(-)
Escherichia coli (strain K12) (21)
1aOTCace-1r0bF01F:153-303
1bOTCace-1r0bF02F:153-303
1cOTCace-1r0bF03F:153-303
1dOTCace-1r0bF04F:153-303
1eOTCace-1r0bF05F:153-303
1fOTCace-1r0bF06F:153-303
(-)
Clan: no clan defined [family: OTCace_N] (48)
(-)
Clan: no clan defined [family: PyrI] (22)
(-)
Clan: no clan defined [family: PyrI_C] (22)
(-)
Family: PyrI_C (22)
(-)
Escherichia coli (strain K12) (19)
4aPyrI_C-1r0bL07L:101-152
4bPyrI_C-1r0bL08L:101-152
4cPyrI_C-1r0bL09L:101-152
4dPyrI_C-1r0bL10L:101-152
4ePyrI_C-1r0bL11L:101-152
4fPyrI_C-1r0bL12L:101-152

(-) Gene Ontology  (16, 20)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (PYRB_ECOLI | P0A786)
molecular function
    GO:0016597    amino acid binding    Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
    GO:0004070    aspartate carbamoyltransferase activity    Catalysis of the reaction: L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + H(+) + phosphate.
    GO:0016743    carboxyl- or carbamoyltransferase activity    Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0044205    'de novo' UMP biosynthetic process    The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroorotate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD(+) or oxygen.
    GO:0006207    'de novo' pyrimidine nucleobase biosynthetic process    The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
    GO:0006221    pyrimidine nucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
    GO:0009220    pyrimidine ribonucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
    GO:0000050    urea cycle    The sequence of reactions by which arginine is synthesized from ornithine, then cleaved to yield urea and regenerate ornithine. The overall reaction equation is NH3 + CO2 + aspartate + 3 ATP + 2 H2O = urea + fumarate + 2 ADP + 2 phosphate + AMP + diphosphate.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Chain G,H,I,J,K,L   (PYRI_ECOLI | P0A7F3)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006207    'de novo' pyrimidine nucleobase biosynthetic process    The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
    GO:0006221    pyrimidine nucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
cellular component
    GO:0009347    aspartate carbamoyltransferase complex    A multienzyme complex that catalyzes the formation N-carbamoyl-L-aspartate from carbamoyl phosphate and L-aspartate. It exhibits a variety of architectural organizations, but in all microorganisms the core catalytic component is a homotrimer of approximately 34 kDa polypeptides.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PYRB_ECOLI | P0A786: 1acm 1at1 1d09 1ekx 1ezz 1f1b 1gq3 1i5o 1nbe 1q95 1r0c 1raa 1rab 1rac 1rad 1rae 1raf 1rag 1rah 1rai 1sku 1tth 1tu0 1tug 1xjw 1za1 1za2 2a0f 2air 2at1 2atc 2fzc 2fzg 2fzk 2h3e 2hse 2ipo 2qg9 2qgf 3at1 3csu 3d7s 3mpu 3npm 4at1 4e2f 4f04 4fyv 4fyw 4fyx 4fyy 4wto 5at1 6at1 7at1 8at1 8atc 9atc
        PYRI_ECOLI | P0A7F3: 1acm 1at1 1d09 1ezz 1f1b 1i5o 1nbe 1q95 1r0c 1raa 1rab 1rac 1rad 1rae 1raf 1rag 1rah 1rai 1sku 1tth 1tu0 1tug 1xjw 1za1 1za2 2a0f 2air 2at1 2atc 2fzc 2fzg 2fzk 2h3e 2hse 2ipo 2qg9 2qgf 3at1 3d7s 3mpu 4at1 4e2f 4f04 4fyv 4fyw 4fyx 4fyy 4wto 5at1 6at1 7at1 8at1 8atc 9atc

(-) Related Entries Specified in the PDB File

1q95 THE SAME PROTEIN COMPLEXED WITH PALA.