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1R0B
Asym. Unit
Info
Asym.Unit (470 KB)
Biol.Unit 1 (457 KB)
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(1)
Title
:
ASPARTATE TRANSCARBAMYLASE (ATCASE) OF ESCHERICHIA COLI: A NEW CRYSTALLINE R STATE BOUND TO PALA, OR TO PRODUCT ANALOGUES PHOSPHATE AND CITRATE
Authors
:
J. Huang, W. N. Lipscomb
Date
:
19 Sep 03 (Deposition) - 08 Jun 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Aspartate Transcarbamylase, Aspartate Carbamoyltransferase, Product Analogue, Citrate, Phosphate, Atcase-Citrate- Phosphate Complex, R State
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Huang, W. N. Lipscomb
Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A New Crystalline R-State Bound To Pala, Or To Product Analogues Citrate And Phosphate
Biochemistry V. 43 6415 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
1b: CITRATE ANION (FLCb)
1c: CITRATE ANION (FLCc)
1d: CITRATE ANION (FLCd)
1e: CITRATE ANION (FLCe)
1f: CITRATE ANION (FLCf)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FLC
6
Ligand/Ion
CITRATE ANION
2
PO4
6
Ligand/Ion
PHOSPHATE ION
3
ZN
6
Ligand/Ion
ZINC ION
[
close Hetero Component info
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:55 , ARG A:105 , HIS A:134 , GLN A:137 , ARG A:167 , ARG A:229 , GLN A:231 , PRO A:266 , PRO A:268 , PO4 A:3001 , LYS B:84
BINDING SITE FOR RESIDUE FLC A 2001
02
AC2
SOFTWARE
THR B:55 , ARG B:105 , HIS B:134 , GLN B:137 , ARG B:167 , THR B:168 , ARG B:229 , GLN B:231 , PRO B:266 , PRO B:268 , PO4 B:3002 , LYS C:84
BINDING SITE FOR RESIDUE FLC B 2002
03
AC3
SOFTWARE
LYS A:84 , THR C:55 , ARG C:105 , HIS C:134 , GLN C:137 , ARG C:167 , THR C:168 , ARG C:229 , GLN C:231 , PRO C:266 , PRO C:268 , PO4 C:3003
BINDING SITE FOR RESIDUE FLC C 2003
04
AC4
SOFTWARE
THR D:55 , ARG D:105 , ALA D:127 , HIS D:134 , GLN D:137 , ARG D:167 , THR D:168 , GLN D:231 , PRO D:266 , PO4 D:3004 , LYS F:84
BINDING SITE FOR RESIDUE FLC D 2004
05
AC5
SOFTWARE
LYS D:84 , THR E:55 , ARG E:105 , HIS E:134 , GLN E:137 , ARG E:167 , THR E:168 , ARG E:229 , GLN E:231 , PRO E:266 , PRO E:268 , PO4 E:3005
BINDING SITE FOR RESIDUE FLC E 2005
06
AC6
SOFTWARE
LYS E:84 , THR F:55 , ARG F:105 , HIS F:134 , GLN F:137 , ARG F:167 , THR F:168 , ARG F:229 , GLN F:231 , PRO F:266 , PRO F:268 , PO4 F:3006
BINDING SITE FOR RESIDUE FLC F 2006
07
AC7
SOFTWARE
CYS G:109 , CYS G:114 , CYS G:138 , CYS G:141
BINDING SITE FOR RESIDUE ZN G 1001
08
AC8
SOFTWARE
CYS H:109 , CYS H:114 , CYS H:138 , CYS H:141
BINDING SITE FOR RESIDUE ZN H 1002
09
AC9
SOFTWARE
CYS I:109 , CYS I:114 , CYS I:138 , CYS I:141
BINDING SITE FOR RESIDUE ZN I 1003
10
BC1
SOFTWARE
CYS J:109 , CYS J:114 , CYS J:138 , CYS J:141
BINDING SITE FOR RESIDUE ZN J 1004
11
BC2
SOFTWARE
CYS K:109 , CYS K:114 , CYS K:138 , CYS K:141
BINDING SITE FOR RESIDUE ZN K 1005
12
BC3
SOFTWARE
CYS L:109 , CYS L:114 , CYS L:138 , CYS L:141
BINDING SITE FOR RESIDUE ZN L 1006
13
BC4
SOFTWARE
SER A:52 , THR A:53 , ARG A:54 , THR A:55 , ARG A:105 , PRO A:268 , FLC A:2001 , SER B:80 , LYS B:84
BINDING SITE FOR RESIDUE PO4 A 3001
14
BC5
SOFTWARE
SER B:52 , THR B:53 , ARG B:54 , THR B:55 , ARG B:105 , PRO B:268 , FLC B:2002 , SER C:80 , LYS C:84
BINDING SITE FOR RESIDUE PO4 B 3002
15
BC6
SOFTWARE
SER A:80 , LYS A:84 , SER C:52 , THR C:53 , ARG C:54 , THR C:55 , ARG C:105 , PRO C:268 , FLC C:2003
BINDING SITE FOR RESIDUE PO4 C 3003
16
BC7
SOFTWARE
ALA D:51 , SER D:52 , THR D:53 , ARG D:54 , THR D:55 , ARG D:105 , PRO D:268 , FLC D:2004 , SER F:80 , LYS F:84
BINDING SITE FOR RESIDUE PO4 D 3004
17
BC8
SOFTWARE
SER D:80 , LYS D:84 , SER E:52 , THR E:53 , ARG E:54 , THR E:55 , ARG E:105 , PRO E:268 , FLC E:2005
BINDING SITE FOR RESIDUE PO4 E 3005
18
BC9
SOFTWARE
SER E:80 , LYS E:84 , SER F:52 , THR F:53 , ARG F:54 , THR F:55 , ARG F:105 , FLC F:2006
BINDING SITE FOR RESIDUE PO4 F 3006
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: CARBAMOYLTRANSFERASE (A:48-55,B:48-55,C:48-55,D:48-55,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBAMOYLTRANSFERASE
PS00097
Aspartate and ornithine carbamoyltransferases signature.
PYRB_ECOLI
49-56
6
A:48-55
B:48-55
C:48-55
D:48-55
E:48-55
F:48-55
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d1r0bg1 (G:1-100)
1b: SCOP_d1r0bh1 (H:1-100)
1c: SCOP_d1r0bi1 (I:1-100)
1d: SCOP_d1r0bj1 (J:1-100)
1e: SCOP_d1r0bk1 (K:1-100)
1f: SCOP_d1r0bl1 (L:1-100)
2a: SCOP_d1r0ba1 (A:1-150)
2b: SCOP_d1r0ba2 (A:151-310)
2c: SCOP_d1r0bb1 (B:1-150)
2d: SCOP_d1r0bb2 (B:151-310)
2e: SCOP_d1r0bc1 (C:1-150)
2f: SCOP_d1r0bc2 (C:151-310)
2g: SCOP_d1r0bd1 (D:1-150)
2h: SCOP_d1r0bd2 (D:151-310)
2i: SCOP_d1r0be1 (E:1-150)
2j: SCOP_d1r0be2 (E:151-310)
2k: SCOP_d1r0bf1 (F:1-150)
2l: SCOP_d1r0bf2 (F:151-310)
3a: SCOP_d1r0bg2 (G:101-153)
3b: SCOP_d1r0bh2 (H:101-153)
3c: SCOP_d1r0bi2 (I:101-153)
3d: SCOP_d1r0bj2 (J:101-153)
3e: SCOP_d1r0bk2 (K:101-153)
3f: SCOP_d1r0bl2 (L:101-153)
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Classes
(
)
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)
Folds
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(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
(63)
Family
:
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
(62)
Protein domain
:
Aspartate carbamoyltransferase
(62)
Escherichia coli [TaxId: 562]
(59)
1a
d1r0bg1
G:1-100
1b
d1r0bh1
H:1-100
1c
d1r0bi1
I:1-100
1d
d1r0bj1
J:1-100
1e
d1r0bk1
K:1-100
1f
d1r0bl1
L:1-100
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ATC-like
(129)
Superfamily
:
Aspartate/ornithine carbamoyltransferase
(122)
Family
:
Aspartate/ornithine carbamoyltransferase
(87)
Protein domain
:
Aspartate carbamoyltransferase catalytic subunit
(68)
Escherichia coli [TaxId: 562]
(62)
2a
d1r0ba1
A:1-150
2b
d1r0ba2
A:151-310
2c
d1r0bb1
B:1-150
2d
d1r0bb2
B:151-310
2e
d1r0bc1
C:1-150
2f
d1r0bc2
C:151-310
2g
d1r0bd1
D:1-150
2h
d1r0bd2
D:151-310
2i
d1r0be1
E:1-150
2j
d1r0be2
E:151-310
2k
d1r0bf1
F:1-150
2l
d1r0bf2
F:151-310
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
(63)
Family
:
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
(62)
Protein domain
:
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
(62)
Escherichia coli [TaxId: 562]
(59)
3a
d1r0bg2
G:101-153
3b
d1r0bh2
H:101-153
3c
d1r0bi2
I:101-153
3d
d1r0bj2
J:101-153
3e
d1r0bk2
K:101-153
3f
d1r0bl2
L:101-153
[
close SCOP info
]
CATH Domains
(3, 24)
Info
all CATH domains
1a: CATH_1r0bG01 (G:8-100)
1b: CATH_1r0bH01 (H:8-100)
1c: CATH_1r0bI01 (I:8-100)
1d: CATH_1r0bK01 (K:8-100)
1e: CATH_1r0bL01 (L:8-100)
1f: CATH_1r0bJ01 (J:9-100)
2a: CATH_1r0bA02 (A:134-291)
2b: CATH_1r0bB02 (B:134-291)
2c: CATH_1r0bC02 (C:134-291)
2d: CATH_1r0bD02 (D:134-291)
2e: CATH_1r0bE02 (E:134-291)
2f: CATH_1r0bF02 (F:134-291)
2g: CATH_1r0bA01 (A:1-133,A:292-310)
2h: CATH_1r0bB01 (B:1-133,B:292-310)
2i: CATH_1r0bC01 (C:1-133,C:292-310)
2j: CATH_1r0bD01 (D:1-133,D:292-310)
2k: CATH_1r0bE01 (E:1-133,E:292-310)
2l: CATH_1r0bF01 (F:1-133,F:292-310)
3a: CATH_1r0bG02 (G:101-153)
3b: CATH_1r0bH02 (H:101-153)
3c: CATH_1r0bI02 (I:101-153)
3d: CATH_1r0bJ02 (J:101-153)
3e: CATH_1r0bK02 (K:101-153)
3f: CATH_1r0bL02 (L:101-153)
View:
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(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.140, no name defined]
(53)
Escherichia coli. Organism_taxid: 562.
(21)
1a
1r0bG01
G:8-100
1b
1r0bH01
H:8-100
1c
1r0bI01
I:8-100
1d
1r0bK01
K:8-100
1e
1r0bL01
L:8-100
1f
1r0bJ01
J:9-100
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1370, no name defined]
(91)
Escherichia coli. Organism_taxid: 562.
(22)
2a
1r0bA02
A:134-291
2b
1r0bB02
B:134-291
2c
1r0bC02
C:134-291
2d
1r0bD02
D:134-291
2e
1r0bE02
E:134-291
2f
1r0bF02
F:134-291
2g
1r0bA01
A:1-133,A:292-310
2h
1r0bB01
B:1-133,B:292-310
2i
1r0bC01
C:1-133,C:292-310
2j
1r0bD01
D:1-133,D:292-310
2k
1r0bE01
E:1-133,E:292-310
2l
1r0bF01
F:1-133,F:292-310
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.20, no name defined]
(53)
Escherichia coli. Organism_taxid: 562.
(21)
3a
1r0bG02
G:101-153
3b
1r0bH02
H:101-153
3c
1r0bI02
I:101-153
3d
1r0bJ02
J:101-153
3e
1r0bK02
K:101-153
3f
1r0bL02
L:101-153
[
close CATH info
]
Pfam Domains
(4, 24)
Info
all PFAM domains
1a: PFAM_OTCace_1r0bF01 (F:153-303)
1b: PFAM_OTCace_1r0bF02 (F:153-303)
1c: PFAM_OTCace_1r0bF03 (F:153-303)
1d: PFAM_OTCace_1r0bF04 (F:153-303)
1e: PFAM_OTCace_1r0bF05 (F:153-303)
1f: PFAM_OTCace_1r0bF06 (F:153-303)
2a: PFAM_OTCace_N_1r0bF07 (F:7-148)
2b: PFAM_OTCace_N_1r0bF08 (F:7-148)
2c: PFAM_OTCace_N_1r0bF09 (F:7-148)
2d: PFAM_OTCace_N_1r0bF10 (F:7-148)
2e: PFAM_OTCace_N_1r0bF11 (F:7-148)
2f: PFAM_OTCace_N_1r0bF12 (F:7-148)
3a: PFAM_PyrI_1r0bL01 (L:4-99)
3b: PFAM_PyrI_1r0bL02 (L:4-99)
3c: PFAM_PyrI_1r0bL03 (L:4-99)
3d: PFAM_PyrI_1r0bL04 (L:4-99)
3e: PFAM_PyrI_1r0bL05 (L:4-99)
3f: PFAM_PyrI_1r0bL06 (L:4-99)
4a: PFAM_PyrI_C_1r0bL07 (L:101-152)
4b: PFAM_PyrI_C_1r0bL08 (L:101-152)
4c: PFAM_PyrI_C_1r0bL09 (L:101-152)
4d: PFAM_PyrI_C_1r0bL10 (L:101-152)
4e: PFAM_PyrI_C_1r0bL11 (L:101-152)
4f: PFAM_PyrI_C_1r0bL12 (L:101-152)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: OTCace]
(48)
Family
:
OTCace
(48)
Escherichia coli (strain K12)
(21)
1a
OTCace-1r0bF01
F:153-303
1b
OTCace-1r0bF02
F:153-303
1c
OTCace-1r0bF03
F:153-303
1d
OTCace-1r0bF04
F:153-303
1e
OTCace-1r0bF05
F:153-303
1f
OTCace-1r0bF06
F:153-303
Clan
:
no clan defined [family: OTCace_N]
(48)
Family
:
OTCace_N
(48)
Escherichia coli (strain K12)
(21)
2a
OTCace_N-1r0bF07
F:7-148
2b
OTCace_N-1r0bF08
F:7-148
2c
OTCace_N-1r0bF09
F:7-148
2d
OTCace_N-1r0bF10
F:7-148
2e
OTCace_N-1r0bF11
F:7-148
2f
OTCace_N-1r0bF12
F:7-148
Clan
:
no clan defined [family: PyrI]
(22)
Family
:
PyrI
(22)
Escherichia coli (strain K12)
(19)
3a
PyrI-1r0bL01
L:4-99
3b
PyrI-1r0bL02
L:4-99
3c
PyrI-1r0bL03
L:4-99
3d
PyrI-1r0bL04
L:4-99
3e
PyrI-1r0bL05
L:4-99
3f
PyrI-1r0bL06
L:4-99
Clan
:
no clan defined [family: PyrI_C]
(22)
Family
:
PyrI_C
(22)
Escherichia coli (strain K12)
(19)
4a
PyrI_C-1r0bL07
L:101-152
4b
PyrI_C-1r0bL08
L:101-152
4c
PyrI_C-1r0bL09
L:101-152
4d
PyrI_C-1r0bL10
L:101-152
4e
PyrI_C-1r0bL11
L:101-152
4f
PyrI_C-1r0bL12
L:101-152
[
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]
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Asym.Unit (470 KB)
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Biol.Unit 1 (457 KB)
Header - Biol.Unit 1
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