Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CYTOCHROME CD1 NITRITE REDUCTASE, OXIDISED FORM
 
Authors :  V. Fulop
Date :  05 Aug 99  (Deposition) - 18 Aug 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.28
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Enzyme, Nitrite Reductase, Oxidoreductase, Denitrification, Electron Transport, Periplasmic (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  V. Fulop, J. W. B. Moir, S. J. Ferguson, J. Hajdu
The Anatomy Of A Bifunctional Enzyme: Structural Basis For Reduction Of Oxygen To Water And Synthesys Of Nitric Oxide By Cytochrome Cd1
Cell(Cambridge, Mass. ) V. 81 369 1995
PubMed-ID: 7736589  |  Reference-DOI: 10.1016/0092-8674(95)90390-9
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CYTOCHROME CD1 NITRITE REDUCTASE
    Biological UnitDIMER
    Cellular LocationPERIPLASM
    ChainsA, B
    Organism ScientificPARACOCCUS PANTOTROPHUS
    Organism Taxid82367

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 17)

Asymmetric/Biological Unit (4, 17)
No.NameCountTypeFull Name
1DHE2Ligand/IonHEME D
2GOL7Ligand/IonGLYCEROL
3HEC2Ligand/IonHEME C
4SO46Ligand/IonSULFATE ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:290 , GLU A:291 , GLN A:292 , HOH A:2752 , HOH A:2753 , MET B:139BINDING SITE FOR RESIDUE SO4 A 621
02AC2SOFTWAREASN A:31 , GLN A:35 , LYS A:237 , SER A:240 , HOH A:2039 , HOH A:2754 , HOH A:2755BINDING SITE FOR RESIDUE SO4 A 622
03AC3SOFTWAREMET A:139 , ASP B:290 , GLU B:291 , GLN B:292 , HOH B:2464 , HOH B:2744BINDING SITE FOR RESIDUE SO4 B 621
04AC4SOFTWAREASN B:31 , GLN B:35 , LYS B:237 , SER B:240 , HOH B:2745 , HOH B:2746 , HOH B:2747 , HOH B:2748BINDING SITE FOR RESIDUE SO4 B 622
05AC5SOFTWAREPHE B:395 , VAL B:396 , PRO B:449 , HOH B:2566 , HOH B:2621 , HOH B:2749 , HOH B:2750 , HOH B:2751 , HOH B:2752 , HOH B:2753BINDING SITE FOR RESIDUE SO4 B 623
06AC6SOFTWAREGLY B:439 , GLY B:440 , ASN B:461 , ILE B:466 , HOH B:2578 , HOH B:2633 , HOH B:2754 , HOH B:2755BINDING SITE FOR RESIDUE SO4 B 624
07AC7SOFTWAREASP A:16 , HIS A:17 , ASN A:23 , ARG A:64 , CYS A:65 , CYS A:68 , HIS A:69 , GLY A:78 , LYS A:79 , LEU A:81 , LEU A:89 , TYR A:93 , LEU A:94 , PHE A:97 , SER A:102 , GOL A:611 , HOH A:2151 , HOH A:2157 , HOH A:2742 , HOH A:2743BINDING SITE FOR RESIDUE HEC A 601
08AC8SOFTWARETYR A:25 , GLU A:26 , PRO A:27 , SER A:28 , MET A:106 , TRP A:109 , ARG A:174 , HIS A:200 , ILE A:201 , ARG A:203 , ARG A:216 , ARG A:243 , SER A:244 , TYR A:263 , ALA A:302 , HIS A:345 , ARG A:391 , PHE A:444 , GLN A:507 , THR A:554 , GLY A:555 , PHE A:557 , HOH A:2027 , HOH A:2028 , HOH A:2374 , HOH A:2377 , HOH A:2414 , HOH A:2744 , HOH A:2745 , HOH A:2746 , HOH A:2747BINDING SITE FOR RESIDUE DHE A 602
09AC9SOFTWAREASP B:16 , HIS B:17 , ASN B:23 , ARG B:64 , CYS B:65 , CYS B:68 , HIS B:69 , GLY B:78 , LYS B:79 , LEU B:81 , LEU B:89 , TYR B:93 , LEU B:94 , PHE B:97 , SER B:102 , PRO B:103 , MET B:123 , GOL B:611 , HOH B:2152 , HOH B:2735 , HOH B:2736 , HOH B:2738BINDING SITE FOR RESIDUE HEC B 601
10BC1SOFTWARETYR B:25 , GLU B:26 , PRO B:27 , SER B:28 , MET B:106 , TRP B:109 , ARG B:174 , HIS B:200 , ILE B:201 , ARG B:203 , ARG B:216 , ARG B:243 , SER B:244 , ILE B:245 , TYR B:263 , ALA B:302 , HIS B:345 , ARG B:391 , PHE B:444 , GLN B:507 , THR B:554 , GLY B:555 , PHE B:557 , HOH B:2382 , HOH B:2385 , HOH B:2422 , HOH B:2739 , HOH B:2740 , HOH B:2741 , HOH B:2742BINDING SITE FOR RESIDUE DHE B 602
11BC2SOFTWAREASN A:23 , ARG A:24 , GLU A:26 , PRO A:27 , GLU A:63 , ARG A:64 , ALA A:104 , GLY A:105 , HEC A:601 , HOH A:2203BINDING SITE FOR RESIDUE GOL A 611
12BC3SOFTWAREVAL A:396 , HIS A:397 , PRO A:398 , THR A:399 , GLY A:401 , HIS A:424BINDING SITE FOR RESIDUE GOL A 612
13BC4SOFTWAREPHE A:395 , VAL A:396 , PRO A:449 , SER A:451 , ILE A:475 , HOH A:2612 , HOH A:2748 , HOH A:2749BINDING SITE FOR RESIDUE GOL A 613
14BC5SOFTWAREGLU A:136 , HOH A:2750 , HOH A:2751BINDING SITE FOR RESIDUE GOL A 614
15BC6SOFTWAREASN B:23 , ARG B:24 , GLU B:26 , PRO B:27 , GLU B:63 , ARG B:64 , ALA B:104 , GLY B:105 , THR B:111 , HEC B:601 , HOH B:2136 , HOH B:2203BINDING SITE FOR RESIDUE GOL B 611
16BC7SOFTWARELYS B:488 , THR B:489 , LEU B:490 , TRP B:495 , LEU B:539 , HOH B:2743BINDING SITE FOR RESIDUE GOL B 612
17BC8SOFTWAREGLU B:465 , GLY B:468 , SER B:469 , PRO B:491 , ALA B:493 , GLU B:494 , HOH B:2637BINDING SITE FOR RESIDUE GOL B 613

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1QKS)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Trp A:264 -Pro A:265
2Trp B:264 -Pro B:265

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1QKS)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTCPS51007 Cytochrome c family profile.NIRS_PARPN81-160
 
  2A:52-131
B:52-131

(-) Exons   (0, 0)

(no "Exon" information available for 1QKS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:559
 aligned with NIRS_PARPN | P72181 from UniProtKB/Swiss-Prot  Length:596

    Alignment length:559
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587         
           NIRS_PARPN    38 DPAAALEDHKTRTDNRYEPSLDNLAQQDVAAPGAPEGVSALSDAQYNEANKIYFERCAGCHGVLRKGATGKALTPDLTRDLGFDYLQSFITYGSPAGMPNWGTSGELSAEQVDLMANYLLLDPAAPPEFGMKEMRESWKVHVAPEDRPTQQENDWDLENLFSVTLRDAGQIALIDGATYEIKSVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLDNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKFNVYNTMTDTY 596
               SCOP domains d1qksa1 A:9-135 N-terminal (heme c) domain of cytochrome cd1-nitrite reductase                                                 d1qksa2 A:136-567 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ---------------------------1qksA01 A:36-135 Cytochrome c                                                                       1qksA02 A:136-567  [code=2.140.10.20, no name defined]                                                                                                                                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.............hhhhh..............hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhh........hhhhhhhhh....hhhhh........hhh.eeeeee....eeeeee.....eeeeee....eeeeee.....eeeeee...eeeeee.......eeeeee......eeee.........eeeeee....eeeeee.....eeeeee...................eee.....eeeeee....eeeeee........eeeee.......eee.....eeeeee....eeeeee....eeeeeee...........eeeee...eeeeeee.....eeeeee............eeeeee................eeeee.....hhhhhh.eeeee.hhh........eeeehhhhhhh......eee.........eeeeeee.......eeeeee....eeeeee..........eeehhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------CYTC  PDB: A:52-131 UniProt: 81-160                                             ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qks A   9 DPAAALEDHKTRTDNRYEPSLDNLAQQDVAAPGAPEGVTALSDAQYNEANKIYFERCAGCHGVLRKGATGKALTPDLTRDLGFDYLQSFITYASPAGMPNWGTSGELSAEQVDLMANYLLLDPAAPPEFGMKEMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKFNVYNTMTDTY 567
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558         

Chain B from PDB  Type:PROTEIN  Length:559
 aligned with NIRS_PARPN | P72181 from UniProtKB/Swiss-Prot  Length:596

    Alignment length:559
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587         
           NIRS_PARPN    38 DPAAALEDHKTRTDNRYEPSLDNLAQQDVAAPGAPEGVSALSDAQYNEANKIYFERCAGCHGVLRKGATGKALTPDLTRDLGFDYLQSFITYGSPAGMPNWGTSGELSAEQVDLMANYLLLDPAAPPEFGMKEMRESWKVHVAPEDRPTQQENDWDLENLFSVTLRDAGQIALIDGATYEIKSVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLDNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKFNVYNTMTDTY 596
               SCOP domains d1qksb1 B:9-135 N-terminal (heme c) domain of cytochrome cd1-nitrite reductase                                                 d1qksb2 B:136-567 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ---------------------------1qksB01 B:36-135 Cytochrome c                                                                       1qksB02 B:136-567  [code=2.140.10.20, no name defined]                                                                                                                                                                                                                                                                                                                                                                                           CATH domains
           Pfam domains (1) -------------------------------------------Cytochrome_CBB3-1qksB03 B:52-127                                            ----------------------------------Cytochrom_D1-1qksB01 B:162-562                                                                                                                                                                                                                                                                                                                                                                                   ----- Pfam domains (1)
           Pfam domains (2) -------------------------------------------Cytochrome_CBB3-1qksB04 B:52-127                                            ----------------------------------Cytochrom_D1-1qksB02 B:162-562                                                                                                                                                                                                                                                                                                                                                                                   ----- Pfam domains (2)
         Sec.struct. author hhhhhhhhh.............hhhhh..............hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhh........hhhhhhhhh....hhhhh........hhhh.eeeee....eeeee......eeeeee....eeeeee.....eeeeee...eeeeee.......eeeeee......eeee.........eeeeee....eeeeee.....eeeeee...................eee.....eeeeee....eeeeee........eeeee.......eee.....eeeeee....eeeeee....eeeeeee...........eeeee...eeeeeee.....eeeeee.....hhhh...eeeeee................eeee......hhhhhh.eeeee.hhh........eeeehhhhhhh......eee.........eeeeeee.......eeeeee....eeeeee..........eeehhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------CYTC  PDB: B:52-131 UniProt: 81-160                                             ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qks B   9 DPAAALEDHKTRTDNRYEPSLDNLAQQDVAAPGAPEGVTALSDAQYNEANKIYFERCAGCHGVLRKGATGKALTPDLTRDLGFDYLQSFITYASPAGMPNWGTSGELSAEQVDLMANYLLLDPAAPPEFGMKEMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKFNVYNTMTDTY 567
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (2, 4)

Asymmetric/Biological Unit

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (NIRS_PARPN | P72181)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0050418    hydroxylamine reductase activity    Catalysis of the reaction: NH3 + H2O + acceptor = hydroxylamine + reduced acceptor.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0050421    nitrite reductase (NO-forming) activity    Catalysis of the reaction: nitric oxide + H2O + ferricytochrome c = nitrite + ferrocytochrome c + 2 H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    DHE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    HEC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Trp A:264 - Pro A:265   [ RasMol ]  
    Trp B:264 - Pro B:265   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1qks
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  NIRS_PARPN | P72181
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  NIRS_PARPN | P72181
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NIRS_PARPN | P721811aof 1aom 1aoq 1dy7 1e2r 1gq1 1h9x 1h9y 1hcm 1hj3 1hj4 1hj5

(-) Related Entries Specified in the PDB File

1aof CYTOCHROME CD1 NITRITE REDUCTASE, REDUCED FORM
1aom SUBSTRATE AND PRODUCT BOUND TO CYTOCHROME CD1 NITRITE REDUCTASE
1aoq CYTOCHROME CD1 NITRITE REDUCTASE WITH SUBSTRATE AND PRODUCT BOUND