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1QJW
Biol. Unit 1
Info
Asym.Unit (139 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (68 KB)
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(1)
Title
:
CEL6A (Y169F) WITH A NON-HYDROLYSABLE CELLOTETRAOSE
Authors
:
J. -Y. Zou, T. A. Jones
Date
:
06 Jul 99 (Deposition) - 18 Sep 99 (Release) - 27 Jan 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Glycosidase, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. -Y. Zou, G. J. Kleywegt, J. Stahlberg, H. Driguez, W. Nerinckx, M. Claeyssens, A. Koivula, T. T. Teeri, T. A. Jones
Crystallographic Evidence For Substrate Ring Distortion And Protein Conformational Changes During Catalysis In Cellobiohydrolase Cel6A From Trichoderma Reesei
Structure V. 7 1035 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(6, 14)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
2a: ALPHA-D-GLUCOSE (GLCa)
2b: ALPHA-D-GLUCOSE (GLCb)
2c: ALPHA-D-GLUCOSE (GLCc)
2d: ALPHA-D-GLUCOSE (GLCd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
4h: ALPHA-D-MANNOSE (MANh)
4i: ALPHA-D-MANNOSE (MANi)
4j: ALPHA-D-MANNOSE (MANj)
4k: ALPHA-D-MANNOSE (MANk)
4l: ALPHA-D-MANNOSE (MANl)
4m: ALPHA-D-MANNOSE (MANm)
4n: ALPHA-D-MANNOSE (MANn)
5a: O1-METHYL-GLUCOSE (MGLa)
5b: O1-METHYL-GLUCOSE (MGLb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7a: 4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOS... (SGCa)
7b: 4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOS... (SGCb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
GLC
2
Ligand/Ion
ALPHA-D-GLUCOSE
3
GOL
1
Ligand/Ion
GLYCEROL
4
MAN
7
Ligand/Ion
ALPHA-D-MANNOSE
5
MGL
1
Ligand/Ion
O1-METHYL-GLUCOSE
6
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
SGC
1
Ligand/Ion
4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOSE
[
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]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC8 (SOFTWARE)
06: AC9 (SOFTWARE)
07: BC1 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC3 (SOFTWARE)
10: BC4 (SOFTWARE)
11: BC5 (SOFTWARE)
12: BC6 (SOFTWARE)
13: CC7 (SOFTWARE)
14: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:146 , HOH A:2142
BINDING SITE FOR RESIDUE CD A 895
02
AC2
SOFTWARE
ASP A:412 , HIS A:414 , HOH A:2318
BINDING SITE FOR RESIDUE CD A 896
03
AC5
SOFTWARE
TYR A:103 , ASP A:137 , LYS A:141 , ALA A:427 , GLY A:428 , GLC A:904 , HOH A:2371 , HOH A:2372 , HOH A:2373
BINDING SITE FOR RESIDUE GOL A 910
04
AC7
SOFTWARE
THR A:87 , SER A:89
BINDING SITE FOR MONO-SACCHARIDE MAN A 503 BOUND TO THR A 87
05
AC8
SOFTWARE
THR A:97 , ASN A:161 , HOH A:2356
BINDING SITE FOR MONO-SACCHARIDE MAN A 504 BOUND TO THR A 97
06
AC9
SOFTWARE
TYR A:103 , SER A:106 , GLU A:107 , LEU A:111 , MAN A:507 , HOH A:2357
BINDING SITE FOR MONO-SACCHARIDE MAN A 505 BOUND TO SER A 106
07
BC1
SOFTWARE
ALA A:105 , SER A:109 , ALA A:125 , ALA A:128 , LYS A:129 , HOH A:2037 , HOH A:2358 , HOH A:2359 , ASN B:339
BINDING SITE FOR MONO-SACCHARIDE MAN A 506 BOUND TO SER A 109
08
BC2
SOFTWARE
SER A:106 , SER A:110 , MAN A:505 , HOH A:2357 , HOH A:2359 , HOH A:2360 , GLN B:281 , HIS B:340
BINDING SITE FOR MONO-SACCHARIDE MAN A 507 BOUND TO SER A 110
09
BC3
SOFTWARE
SER A:115 , GLN A:432 , HOH A:2021 , HOH A:2023 , HOH A:2361 , HOH A:2362 , HOH A:2364 , HOH A:2365
BINDING SITE FOR MONO-SACCHARIDE MAN A 508 BOUND TO SER A 115
10
BC4
SOFTWARE
GLY A:118 , THR A:122 , HOH A:2366 , HOH A:2367 , HOH A:2368
BINDING SITE FOR MONO-SACCHARIDE MAN A 509 BOUND TO THR A 122
11
BC5
SOFTWARE
LEU A:243 , ASN A:289 , HOH A:2353 , HOH A:2354
BINDING SITE FOR MONO-SACCHARIDE NAG A 501 BOUND TO ASN A 289
12
BC6
SOFTWARE
TRP A:309 , ASN A:310 , THR A:312 , PHE A:391 , HOH A:2294 , HOH A:2355
BINDING SITE FOR MONO-SACCHARIDE NAG A 502 BOUND TO ASN A 310
13
CC7
SOFTWARE
TRP A:135 , ASP A:137 , PHE A:169 , ASP A:175 , ALA A:178 , SER A:181 , ASP A:221 , ASN A:229 , HIS A:266 , GLY A:268 , TRP A:269 , ASN A:305 , TRP A:364 , GLY A:365 , TRP A:367 , LYS A:395 , PRO A:396 , GLU A:399 , ASP A:401 , GOL A:910 , HOH A:2096 , HOH A:2101 , HOH A:2154 , HOH A:2199 , HOH A:2219 , HOH A:2276 , HOH A:2313 , HOH A:2369 , HOH A:2370 , HOH A:2371
BINDING SITE FOR POLY-SACCHARIDE RESIDUES MGL A 901 THROUGH GLC A 904
14
CC8
SOFTWARE
TRP A:135 , ASP A:137 , PHE A:169 , ASP A:175 , ALA A:178 , SER A:181 , ASP A:221 , ASN A:229 , HIS A:266 , GLY A:268 , TRP A:269 , ASN A:305 , TRP A:364 , GLY A:365 , TRP A:367 , LYS A:395 , PRO A:396 , GLU A:399 , ASP A:401 , GOL A:910 , HOH A:2096 , HOH A:2101 , HOH A:2154 , HOH A:2199 , HOH A:2219 , HOH A:2276 , HOH A:2313 , HOH A:2369 , HOH A:2370 , HOH A:2371 , TRP B:135 , ASP B:137 , PHE B:169 , ASP B:175 , ALA B:178 , SER B:181 , ASP B:221 , ASN B:229 , HIS B:266 , GLY B:268 , TRP B:269 , ASN B:305 , TRP B:364 , GLY B:365 , TRP B:367 , LYS B:395 , GLU B:399 , ASP B:401 , GOL B:910 , HOH B:2082 , HOH B:2265 , HOH B:2294 , HOH B:2352 , HOH B:2353 , HOH B:2354 , HOH B:2355 , HOH B:2356 , HOH B:2359
BINDING SITE FOR POLY-SACCHARIDE RESIDUES MGL B 901 THROUGH GLC B 904
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F6_1 (A:167-183)
2: GLYCOSYL_HYDROL_F6_2 (A:215-224)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F6_1
PS00655
Glycosyl hydrolases family 6 signature 1.
GUX2_HYPJE
191-207
1
A:167-183
-
2
GLYCOSYL_HYDROL_F6_2
PS00656
Glycosyl hydrolases family 6 signature 2.
GUX2_HYPJE
239-248
1
A:215-224
-
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1qjwa_ (A:)
1b: SCOP_d1qjwb_ (B:)
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Classes
(
)
(
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Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
7-stranded beta/alpha barrel
(137)
Superfamily
:
Glycosyl hydrolases family 6, cellulases
(42)
Family
:
Glycosyl hydrolases family 6, cellulases
(34)
Protein domain
:
Cellobiohydrolase II (Cel6)
(17)
Trichoderma reesei, Cel6a [TaxId: 51453]
(7)
1a
d1qjwa_
A:
1b
d1qjwb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1qjwA00 (A:86-447)
1b: CATH_1qjwB00 (B:86-447)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
7-stranded glycosidases (cellulases)
(28)
Trichoderma reesei. Organism_taxid: 51453.
(4)
1a
1qjwA00
A:86-447
1b
1qjwB00
B:86-447
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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