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1QGH
Asym. Unit
Info
Asym.Unit (309 KB)
Biol.Unit 1 (303 KB)
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(1)
Title
:
THE X-RAY STRUCTURE OF THE UNUSUAL DODECAMERIC FERRITIN FROM LISTERIA INNOCUA, REVEALS A NOVEL INTERSUBUNIT IRON BINDING SITE.
Authors
:
A. Ilari, S. Stefanini, E. Chiancone, D. Tsernoglou
Date
:
27 Apr 99 (Deposition) - 14 Jan 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Ferritin, Metal Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Ilari, S. Stefanini, E. Chiancone, D. Tsernoglou
The Dodecameric Ferritin From Listeria Innocua Contains A Novel Intersubunit Iron-Binding Site.
Nat. Struct. Biol. V. 7 38 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
1e: FE (III) ION (FEe)
1f: FE (III) ION (FEf)
1g: FE (III) ION (FEg)
1h: FE (III) ION (FEh)
1i: FE (III) ION (FEi)
1j: FE (III) ION (FEj)
1k: FE (III) ION (FEk)
1l: FE (III) ION (FEl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
12
Ligand/Ion
FE (III) ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: ASA (AUTHOR)
11: ASB (AUTHOR)
12: ASC (AUTHOR)
13: ASD (AUTHOR)
14: ASE (AUTHOR)
15: ASF (AUTHOR)
16: ASG (AUTHOR)
17: ASH (AUTHOR)
18: ASI (AUTHOR)
19: ASJ (AUTHOR)
20: ASK (AUTHOR)
21: ASL (AUTHOR)
22: BC1 (SOFTWARE)
23: BC2 (SOFTWARE)
24: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS E:31 , HOH E:197 , ASP G:58 , GLU G:62
BINDING SITE FOR RESIDUE FE A 157
02
AC2
SOFTWARE
ASP E:58 , GLU E:62 , HIS G:31
BINDING SITE FOR RESIDUE FE B 157
03
AC3
SOFTWARE
ASP A:58 , GLU A:62 , HIS C:31 , ASP C:47
BINDING SITE FOR RESIDUE FE C 157
04
AC4
SOFTWARE
HIS A:31 , ASP A:47 , ASP C:58 , GLU C:62
BINDING SITE FOR RESIDUE FE D 157
05
AC5
SOFTWARE
ASP I:58 , GLU I:62 , HIS K:31
BINDING SITE FOR RESIDUE FE E 157
06
AC6
SOFTWARE
HIS F:31 , ASP H:58 , GLU H:62
BINDING SITE FOR RESIDUE FE F 157
07
AC7
SOFTWARE
ASP J:58 , GLU J:62 , HOH J:161 , HIS L:31 , ASP L:47
BINDING SITE FOR RESIDUE FE G 157
08
AC8
SOFTWARE
HIS J:31 , ASP L:58 , GLU L:62 , HOH L:158
BINDING SITE FOR RESIDUE FE H 157
09
AC9
SOFTWARE
HIS I:31 , ASP K:58 , GLU K:62
BINDING SITE FOR RESIDUE FE I 157
10
ASA
AUTHOR
GLU A:62 , ASP A:58 , HIS A:31 , ASP A:47 , HIS A:43
IRON-BINDING SITE
11
ASB
AUTHOR
GLU B:62 , ASP B:58 , HIS B:31 , ASP B:47 , HIS B:43
IRON-BINDING SITE
12
ASC
AUTHOR
GLU C:62 , ASP C:58 , HIS C:31 , ASP C:47 , HIS C:43
IRON-BINDING SITE
13
ASD
AUTHOR
GLU D:62 , ASP D:58 , HIS D:31 , ASP D:47 , HIS D:43
IRON-BINDING SITE
14
ASE
AUTHOR
GLU E:62 , ASP E:58 , HIS E:31 , ASP E:47 , HIS E:43
IRON-BINDING SITE
15
ASF
AUTHOR
GLU F:62 , ASP F:58 , HIS F:31 , ASP F:47 , HIS F:43
IRON-BINDING SITE
16
ASG
AUTHOR
GLU G:62 , ASP G:58 , HIS G:31 , ASP G:47 , HIS G:43
IRON-BINDING SITE
17
ASH
AUTHOR
GLU H:62 , ASP H:58 , HIS H:31 , ASP H:47 , HIS H:43
IRON-BINDING SITE
18
ASI
AUTHOR
GLU I:62 , ASP I:58 , HIS I:31 , ASP I:47 , HIS I:43
IRON-BINDING SITE
19
ASJ
AUTHOR
GLU J:62 , ASP J:58 , HIS J:31 , ASP J:47 , HIS J:43
IRON-BINDING SITE
20
ASK
AUTHOR
GLU K:62 , ASP K:58 , HIS K:31 , ASP K:47 , HIS K:43
IRON-BINDING SITE
21
ASL
AUTHOR
GLU L:62 , ASP L:58 , HIS L:31 , ASP L:47 , HIS L:43
IRON-BINDING SITE
22
BC1
SOFTWARE
ASP B:58 , GLU B:62 , HIS D:31
BINDING SITE FOR RESIDUE FE J 157
23
BC2
SOFTWARE
ASP F:58 , GLU F:62 , HIS H:31
BINDING SITE FOR RESIDUE FE K 157
24
BC3
SOFTWARE
HIS B:31 , ASP D:58 , GLU D:62
BINDING SITE FOR RESIDUE FE L 157
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: DPS_1 (A:31-47,B:31-47,C:31-47,D:31-47,E:...)
2: DPS_2 (A:57-71,B:57-71,C:57-71,D:57-71,E:...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DPS_1
PS00818
Dps protein family signature 1.
DPS_LISIN
31-47
12
A:31-47
B:31-47
C:31-47
D:31-47
E:31-47
F:31-47
G:31-47
H:31-47
I:31-47
J:31-47
K:31-47
L:31-47
2
DPS_2
PS00819
Dps protein family signature 2.
DPS_LISIN
57-71
12
A:57-71
B:57-71
C:57-71
D:57-71
E:57-71
F:57-71
G:57-71
H:57-71
I:57-71
J:57-71
K:57-71
L:57-71
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1qgha_ (A:)
1b: SCOP_d1qghi_ (I:)
1c: SCOP_d1qghj_ (J:)
1d: SCOP_d1qghk_ (K:)
1e: SCOP_d1qghl_ (L:)
1f: SCOP_d1qghb_ (B:)
1g: SCOP_d1qghc_ (C:)
1h: SCOP_d1qghd_ (D:)
1i: SCOP_d1qghe_ (E:)
1j: SCOP_d1qghf_ (F:)
1k: SCOP_d1qghg_ (G:)
1l: SCOP_d1qghh_ (H:)
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(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
Dodecameric ferritin homolog
(44)
Listeria innocua [TaxId: 1642]
(4)
1a
d1qgha_
A:
1b
d1qghi_
I:
1c
d1qghj_
J:
1d
d1qghk_
K:
1e
d1qghl_
L:
1f
d1qghb_
B:
1g
d1qghc_
C:
1h
d1qghd_
D:
1i
d1qghe_
E:
1j
d1qghf_
F:
1k
d1qghg_
G:
1l
d1qghh_
H:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1qghA00 (A:7-156)
1b: CATH_1qghB00 (B:7-156)
1c: CATH_1qghK00 (K:7-156)
1d: CATH_1qghL00 (L:7-156)
1e: CATH_1qghC00 (C:7-156)
1f: CATH_1qghD00 (D:7-156)
1g: CATH_1qghE00 (E:7-156)
1h: CATH_1qghF00 (F:7-156)
1i: CATH_1qghG00 (G:7-156)
1j: CATH_1qghH00 (H:7-156)
1k: CATH_1qghI00 (I:7-156)
1l: CATH_1qghJ00 (J:7-156)
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(
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Listeria innocua. Organism_taxid: 1642
(1)
1a
1qghA00
A:7-156
1b
1qghB00
B:7-156
1c
1qghK00
K:7-156
1d
1qghL00
L:7-156
1e
1qghC00
C:7-156
1f
1qghD00
D:7-156
1g
1qghE00
E:7-156
1h
1qghF00
F:7-156
1i
1qghG00
G:7-156
1j
1qghH00
H:7-156
1k
1qghI00
I:7-156
1l
1qghJ00
J:7-156
[
close CATH info
]
Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Ferritin_1qghL01 (L:10-155)
1b: PFAM_Ferritin_1qghL02 (L:10-155)
1c: PFAM_Ferritin_1qghL03 (L:10-155)
1d: PFAM_Ferritin_1qghL04 (L:10-155)
1e: PFAM_Ferritin_1qghL05 (L:10-155)
1f: PFAM_Ferritin_1qghL06 (L:10-155)
1g: PFAM_Ferritin_1qghL07 (L:10-155)
1h: PFAM_Ferritin_1qghL08 (L:10-155)
1i: PFAM_Ferritin_1qghL09 (L:10-155)
1j: PFAM_Ferritin_1qghL10 (L:10-155)
1k: PFAM_Ferritin_1qghL11 (L:10-155)
1l: PFAM_Ferritin_1qghL12 (L:10-155)
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Clans
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)
(
)
Families
(
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(
)
Organisms
(
)
(
)
Clan
:
Ferritin
(185)
Family
:
Ferritin
(83)
Listeria innocua
(1)
1a
Ferritin-1qghL01
L:10-155
1b
Ferritin-1qghL02
L:10-155
1c
Ferritin-1qghL03
L:10-155
1d
Ferritin-1qghL04
L:10-155
1e
Ferritin-1qghL05
L:10-155
1f
Ferritin-1qghL06
L:10-155
1g
Ferritin-1qghL07
L:10-155
1h
Ferritin-1qghL08
L:10-155
1i
Ferritin-1qghL09
L:10-155
1j
Ferritin-1qghL10
L:10-155
1k
Ferritin-1qghL11
L:10-155
1l
Ferritin-1qghL12
L:10-155
[
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