Chain A from PDB Type:PROTEIN Length:115
aligned with NIKR_ECOLI | P0A6Z6 from UniProtKB/Swiss-Prot Length:133
Alignment length:132
10 20 30 40 50 60 70 80 90 100 110 120 130
NIKR_ECOLI 1 MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQCLPKE 132
SCOP domains d1q5va1 A:1-48 d1q5va2 A:49- 132 Nickel responsive regulator NikR, C-terminal domain SCOP domains
CATH domains 1q5vA01 A:1-46 Met repressor-like 1q5vA02 A:48-1 32 ACT-like. Chain A, domain 2 CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eeeeeeehhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.-...eeeeeeeeee.----------------....eeeeeeee.....eeeeeeeeeehhhhhhhhhhhhhh...eeeeeeeee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
1q5v A 1 MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQ-HGTQGFAVLSYVYE----------------HHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQCLPKE 132
10 20 30 40 | |50 60| - |80 90 100 110 120 130
46 | 61 78
48
Chain B from PDB Type:PROTEIN Length:116
aligned with NIKR_ECOLI | P0A6Z6 from UniProtKB/Swiss-Prot Length:133
Alignment length:133
10 20 30 40 50 60 70 80 90 100 110 120 130
NIKR_ECOLI 1 MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQCLPKED 133
SCOP domains d1q5vb1 B:1-48 d1q5vb2 B:49- 133 Nickel responsive regulator NikR, C-terminal domain SCOP domains
CATH domains 1q5vB01 B:1-47 Met repressor-like 1q5vB02 B:48-1 33 ACT-like. Chain A, domain 2 CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeeehhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.........eeeeeeeeee.-----------------...eeeeeeee.....eeeeeeeeeehhhhhhhhhhhhhh...eeeeeeeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
1q5v B 1 MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQGFAVLSYVYE-----------------HDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQCLPKED 133
10 20 30 40 50 60| - 80 90 100 110 120 130
61 79
Chain C from PDB Type:PROTEIN Length:115
aligned with NIKR_ECOLI | P0A6Z6 from UniProtKB/Swiss-Prot Length:133
Alignment length:132
10 20 30 40 50 60 70 80 90 100 110 120 130
NIKR_ECOLI 1 MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQCLPKE 132
SCOP domains d1q5vc1 C:1-48 d1q5vc2 C:49- 132 Nickel responsive regulator NikR, C-terminal domai SCOP domains
CATH domains 1q5vC01 C:1-47 Met repressor-like 1q5vC02 C:48-1 32 ACT-like. Chain A, domain 2 CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eeeeeeehhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh......eeeeeeeeee.-----------------...eeeeeeee.....eeeeeeeeeehhhhhhhhhhhh.....eeeeeeeee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
1q5v C 1 MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQGFAVLSYVYE-----------------HDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQCLPKE 132
10 20 30 40 50 60| - 80 90 100 110 120 130
61 79
Chain D from PDB Type:PROTEIN Length:130
aligned with NIKR_ECOLI | P0A6Z6 from UniProtKB/Swiss-Prot Length:133
Alignment length:132
10 20 30 40 50 60 70 80 90 100 110 120 130
NIKR_ECOLI 1 MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQCLPKE 132
SCOP domains d1q5vd1 D:1-48 d1q5vd2 D:49-132 Nickel responsive regulator NikR, C-terminal domain SCOP domains
CATH domains 1q5vD01 D:1-47 Met repr essor-like 1q5vD02 D:48-132 ACT-like. Chain A, domain 2 CATH domains
Pfam domains (1) --RHH_1-1q5vD05 D:3-42 ----------NikR_C-1q5vD01 D:53-131 - Pfam domains (1)
Pfam domains (2) --RHH_1-1q5vD06 D:3-42 ----------NikR_C-1q5vD02 D:53-131 - Pfam domains (2)
Pfam domains (3) --RHH_1-1q5vD07 D:3-42 ----------NikR_C-1q5vD03 D:53-131 - Pfam domains (3)
Pfam domains (4) --RHH_1-1q5vD08 D:3-42 ----------NikR_C-1q5vD04 D:53-131 - Pfam domains (4)
Sec.struct. author .eeeeeeehhhhhhhhhhhh...-..hhhhhhhhhhhhhhh.........eeeeeeeeeee..hhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhh-..eeeeeeeee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
1q5v D 1 MQRVTITLDDDLLETLDSLSQRR-YNNRSEAIRDILRSALAQEATQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQ-GVRHGHLQCLPKE 132
10 20 | | 30 40 50 60 70 80 90 100 110 120 130
23 | 118 |
25 120
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |