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(-) Description

Title :  S-S-LAMBDA-SHAPED TRANS AND CIS INTERACTIONS OF CADHERINS MODEL BASED ON FITTING C-CADHERIN (1L3W) TO 3D MAP OF DESMOSOMES OBTAINED BY ELECTRON TOMOGRAPHY
 
Authors :  W. He, P. Cowin, D. L. Stokes
Date :  06 Aug 03  (Deposition) - 07 Oct 03  (Release) - 13 Jul 11  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  30.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Cadherin; Trans Interaction; Desmosome; Junction; Adhesion, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. He, P. Cowin, D. L. Stokes
Untangling Desmosomal Knots With Electron Tomography
Science V. 302 109 2003
PubMed-ID: 14526082  |  Reference-DOI: 10.1126/SCIENCE.1086957

(-) Compounds

Molecule 1 - EP-CADHERIN
    Chains: A, B, C, D
    Fragment: RESIDUES 1-546 OF PDB ENTRY 1L3W
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: RIGID BODY FIT BY C-CADHERIN FROM PDB ENTRY 1L3W
    Other Details - Source: DESMOSOME PREPARATION FROM NEWBORN MOUSE SKIN
    Synonym: C-CADHERIN
    Tissue: SKIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 108)

Asymmetric/Biological Unit (3, 108)
No.NameCountTypeFull Name
1CA48Ligand/IonCALCIUM ION
2NAG44Ligand/IonN-ACETYL-D-GLUCOSAMINE
3NDG16Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE

(-) Sites  (108, 108)

Asymmetric Unit (108, 108)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREASP A:154 , PRO A:155 , GLU A:186 , TYR A:187 , THR A:188BINDING SITE FOR RESIDUE NAG A 801
002AC2SOFTWAREASP A:222 , THR A:245BINDING SITE FOR RESIDUE NAG A 802
003AC3SOFTWAREGLN A:256 , VAL A:258 , TYR A:259 , ILE A:271 , THR A:272 , THR A:273BINDING SITE FOR RESIDUE NAG A 803
004AC4SOFTWAREPHE A:308 , LEU A:312 , THR A:314BINDING SITE FOR RESIDUE NDG A 804
005AC5SOFTWARETHR A:301 , THR A:314 , THR A:316 , NAG A:806BINDING SITE FOR RESIDUE NAG A 805
006AC6SOFTWARELYS A:224 , THR A:225 , GLN A:299 , THR A:316 , THR A:318 , NAG A:805BINDING SITE FOR RESIDUE NAG A 806
007AC7SOFTWARETHR A:227 , VAL A:297 , THR A:320BINDING SITE FOR RESIDUE NAG A 807
008AC8SOFTWARELYS A:402 , TYR A:406 , THR A:407BINDING SITE FOR RESIDUE NAG A 808
009AC9SOFTWARELEU A:411 , VAL A:419 , GLY A:420 , THR A:421 , NAG A:810BINDING SITE FOR RESIDUE NAG A 809
010BC1SOFTWARETHR A:421 , THR A:423 , NAG A:809 , NDG A:811BINDING SITE FOR RESIDUE NAG A 810
011BC2SOFTWAREALA A:335 , ILE A:409 , THR A:425 , NAG A:810BINDING SITE FOR RESIDUE NDG A 811
012BC3SOFTWARETYR A:226 , THR A:227 , ALA A:228 , GLN A:240BINDING SITE FOR RESIDUE NAG A 812
013BC4SOFTWAREASN A:403BINDING SITE FOR RESIDUE NDG A 902
014BC5SOFTWAREASN A:270BINDING SITE FOR RESIDUE NDG A 903
015BC6SOFTWAREVAL A:524 , ASN A:526 , NAG B:904BINDING SITE FOR RESIDUE NAG A 904
016BC7SOFTWAREASP B:154 , PRO B:155 , GLU B:186 , TYR B:187 , THR B:188BINDING SITE FOR RESIDUE NAG B 801
017BC8SOFTWAREASP B:222 , THR B:245BINDING SITE FOR RESIDUE NAG B 802
018BC9SOFTWAREGLN B:256 , VAL B:258 , TYR B:259 , ILE B:271 , THR B:272 , THR B:273BINDING SITE FOR RESIDUE NAG B 803
019CC1SOFTWAREPHE B:308 , LEU B:312 , THR B:314BINDING SITE FOR RESIDUE NDG B 804
020CC2SOFTWARETHR B:301 , THR B:314 , THR B:316 , NAG B:806BINDING SITE FOR RESIDUE NAG B 805
021CC3SOFTWARELYS B:224 , THR B:225 , GLN B:299 , THR B:316 , THR B:318 , NAG B:805BINDING SITE FOR RESIDUE NAG B 806
022CC4SOFTWARETHR B:227 , VAL B:297 , THR B:320BINDING SITE FOR RESIDUE NAG B 807
023CC5SOFTWARELYS B:402 , TYR B:406 , THR B:407BINDING SITE FOR RESIDUE NAG B 808
024CC6SOFTWARELEU B:411 , VAL B:419 , GLY B:420 , THR B:421 , NAG B:810BINDING SITE FOR RESIDUE NAG B 809
025CC7SOFTWARETHR B:421 , THR B:423 , NAG B:809 , NDG B:811BINDING SITE FOR RESIDUE NAG B 810
026CC8SOFTWAREALA B:335 , ILE B:409 , THR B:425 , NAG B:810BINDING SITE FOR RESIDUE NDG B 811
027CC9SOFTWARETYR B:226 , THR B:227 , ALA B:228 , GLN B:240BINDING SITE FOR RESIDUE NAG B 812
028DC1SOFTWAREASN B:403BINDING SITE FOR RESIDUE NDG B 902
029DC2SOFTWAREASN B:270BINDING SITE FOR RESIDUE NDG B 903
030DC3SOFTWAREASP A:506 , NAG A:904 , VAL B:524 , ASN B:526BINDING SITE FOR RESIDUE NAG B 904
031DC4SOFTWAREASP C:154 , PRO C:155 , GLU C:186 , TYR C:187 , THR C:188BINDING SITE FOR RESIDUE NAG C 801
032DC5SOFTWAREASP C:222 , THR C:245BINDING SITE FOR RESIDUE NAG C 802
033DC6SOFTWAREGLN C:256 , VAL C:258 , TYR C:259 , ILE C:271 , THR C:272 , THR C:273BINDING SITE FOR RESIDUE NAG C 803
034DC7SOFTWAREPHE C:308 , LEU C:312 , THR C:314BINDING SITE FOR RESIDUE NDG C 804
035DC8SOFTWARETHR C:301 , THR C:314 , THR C:316 , NAG C:806BINDING SITE FOR RESIDUE NAG C 805
036DC9SOFTWARELYS C:224 , THR C:225 , GLN C:299 , THR C:316 , THR C:318 , NAG C:805BINDING SITE FOR RESIDUE NAG C 806
037EC1SOFTWARETHR C:227 , VAL C:297 , THR C:320BINDING SITE FOR RESIDUE NAG C 807
038EC2SOFTWARELYS C:402 , TYR C:406 , THR C:407BINDING SITE FOR RESIDUE NAG C 808
039EC3SOFTWARELEU C:411 , VAL C:419 , GLY C:420 , THR C:421 , NAG C:810BINDING SITE FOR RESIDUE NAG C 809
040EC4SOFTWARETHR C:421 , THR C:423 , NAG C:809 , NDG C:811BINDING SITE FOR RESIDUE NAG C 810
041EC5SOFTWAREALA C:335 , ILE C:409 , THR C:425 , NAG C:810BINDING SITE FOR RESIDUE NDG C 811
042EC6SOFTWARETYR C:226 , THR C:227 , ALA C:228 , GLN C:240BINDING SITE FOR RESIDUE NAG C 812
043EC7SOFTWAREASN C:403BINDING SITE FOR RESIDUE NDG C 902
044EC8SOFTWAREASN C:270BINDING SITE FOR RESIDUE NDG C 903
045EC9SOFTWAREVAL C:524 , ASN C:526BINDING SITE FOR RESIDUE NAG C 904
046FC1SOFTWAREASP D:154 , PRO D:155 , GLU D:186 , TYR D:187 , THR D:188BINDING SITE FOR RESIDUE NAG D 801
047FC2SOFTWAREASP D:222 , THR D:245BINDING SITE FOR RESIDUE NAG D 802
048FC3SOFTWAREGLN D:256 , VAL D:258 , TYR D:259 , ILE D:271 , THR D:272 , THR D:273BINDING SITE FOR RESIDUE NAG D 803
049FC4SOFTWAREPHE D:308 , LEU D:312 , THR D:314BINDING SITE FOR RESIDUE NDG D 804
050FC5SOFTWARETHR D:301 , THR D:314 , THR D:316 , NAG D:806BINDING SITE FOR RESIDUE NAG D 805
051FC6SOFTWARELYS D:224 , THR D:225 , GLN D:299 , THR D:316 , THR D:318 , NAG D:805BINDING SITE FOR RESIDUE NAG D 806
052FC7SOFTWARETHR D:227 , VAL D:297 , THR D:320BINDING SITE FOR RESIDUE NAG D 807
053FC8SOFTWARELYS D:402 , TYR D:406 , THR D:407BINDING SITE FOR RESIDUE NAG D 808
054FC9SOFTWARELEU D:411 , VAL D:419 , GLY D:420 , THR D:421 , NAG D:810BINDING SITE FOR RESIDUE NAG D 809
055GC1SOFTWARETHR D:421 , THR D:423 , NAG D:809 , NDG D:811BINDING SITE FOR RESIDUE NAG D 810
056GC2SOFTWAREALA D:335 , ILE D:409 , THR D:425 , NAG D:810BINDING SITE FOR RESIDUE NDG D 811
057GC3SOFTWARETYR D:226 , THR D:227 , ALA D:228 , GLN D:240BINDING SITE FOR RESIDUE NAG D 812
058GC4SOFTWAREASN D:403BINDING SITE FOR RESIDUE NDG D 902
059GC5SOFTWAREASN D:270BINDING SITE FOR RESIDUE NDG D 903
060GC6SOFTWAREVAL D:524 , ASN D:526BINDING SITE FOR RESIDUE NAG D 904
061GC7SOFTWAREASN A:102 , ASN A:104 , ASP A:134 , ASP A:136 , ASN A:143 , ASP A:195BINDING SITE FOR RESIDUE CA A 905
062GC8SOFTWAREGLU A:11 , GLU A:69 , ASP A:100 , GLN A:101 , ASP A:103 , ASP A:136BINDING SITE FOR RESIDUE CA A 906
063GC9SOFTWAREGLU A:11 , ASN A:12 , ASP A:67 , GLU A:69 , ASP A:103BINDING SITE FOR RESIDUE CA A 907
064HC1SOFTWAREGLU A:119 , GLU A:182 , ASP A:213 , ALA A:214 , ASP A:216 , ASP A:248BINDING SITE FOR RESIDUE CA A 908
065HC2SOFTWAREGLU A:119 , ASP A:180 , GLU A:182 , ASP A:216BINDING SITE FOR RESIDUE CA A 909
066HC3SOFTWAREASN A:215 , ASN A:217 , ASP A:246 , ASP A:248 , ALA A:254 , ASN A:304BINDING SITE FOR RESIDUE CA A 910
067HC4SOFTWAREGLU A:232 , ASP A:289 , GLU A:291 , GLU A:328 , CA A:915BINDING SITE FOR RESIDUE CA A 911
068HC5SOFTWAREASN A:327 , GLU A:328 , ASP A:358 , ASP A:360 , GLN A:365 , ASP A:414BINDING SITE FOR RESIDUE CA A 912
069HC6SOFTWAREGLU A:343 , ASP A:395 , GLU A:397 , ASP A:435 , CA A:916BINDING SITE FOR RESIDUE CA A 913
070HC7SOFTWAREASN A:434 , ASN A:436 , ASP A:461 , ASP A:463 , ASN A:467 , ASP A:515BINDING SITE FOR RESIDUE CA A 914
071HC8SOFTWAREGLU A:232 , GLU A:291 , ASP A:325 , VAL A:326 , GLU A:328 , ASP A:360 , CA A:911BINDING SITE FOR RESIDUE CA A 915
072HC9SOFTWAREGLU A:343 , GLU A:397 , ASP A:432 , VAL A:433 , ASP A:435 , ASP A:463 , CA A:913BINDING SITE FOR RESIDUE CA A 916
073IC1SOFTWAREASN B:102 , ASN B:104 , ASP B:134 , ASP B:136 , ASN B:143 , ASP B:195BINDING SITE FOR RESIDUE CA B 905
074IC2SOFTWAREGLU B:11 , GLU B:69 , ASP B:100 , GLN B:101 , ASP B:103 , ASP B:136BINDING SITE FOR RESIDUE CA B 906
075IC3SOFTWAREGLU B:11 , ASN B:12 , ASP B:67 , GLU B:69 , ASP B:103BINDING SITE FOR RESIDUE CA B 907
076IC4SOFTWAREGLU B:119 , GLU B:182 , ASP B:213 , ALA B:214 , ASP B:216 , ASP B:248BINDING SITE FOR RESIDUE CA B 908
077IC5SOFTWAREGLU B:119 , ASP B:180 , GLU B:182 , ASP B:216BINDING SITE FOR RESIDUE CA B 909
078IC6SOFTWAREASN B:215 , ASN B:217 , ASP B:246 , ASP B:248 , ALA B:254 , ASN B:304BINDING SITE FOR RESIDUE CA B 910
079IC7SOFTWAREGLU B:232 , ASP B:289 , GLU B:291 , GLU B:328 , CA B:915BINDING SITE FOR RESIDUE CA B 911
080IC8SOFTWAREASN B:327 , GLU B:328 , ASP B:358 , ASP B:360 , GLN B:365 , ASP B:414BINDING SITE FOR RESIDUE CA B 912
081IC9SOFTWAREGLU B:343 , ASP B:395 , GLU B:397 , ASP B:435 , CA B:916BINDING SITE FOR RESIDUE CA B 913
082JC1SOFTWAREASN B:434 , ASN B:436 , ASP B:461 , ASP B:463 , ASN B:467 , ASP B:515BINDING SITE FOR RESIDUE CA B 914
083JC2SOFTWAREGLU B:232 , GLU B:291 , ASP B:325 , VAL B:326 , GLU B:328 , ASP B:360 , CA B:911BINDING SITE FOR RESIDUE CA B 915
084JC3SOFTWAREGLU B:343 , GLU B:397 , ASP B:432 , VAL B:433 , ASP B:435 , ASP B:463 , CA B:913BINDING SITE FOR RESIDUE CA B 916
085JC4SOFTWAREASN C:102 , ASN C:104 , ASP C:134 , ASP C:136 , ASN C:143 , ASP C:195BINDING SITE FOR RESIDUE CA C 905
086JC5SOFTWAREGLU C:11 , GLU C:69 , ASP C:100 , GLN C:101 , ASP C:103 , ASP C:136BINDING SITE FOR RESIDUE CA C 906
087JC6SOFTWAREGLU C:11 , ASN C:12 , ASP C:67 , GLU C:69 , ASP C:103BINDING SITE FOR RESIDUE CA C 907
088JC7SOFTWAREGLU C:119 , GLU C:182 , ASP C:213 , ALA C:214 , ASP C:216 , ASP C:248BINDING SITE FOR RESIDUE CA C 908
089JC8SOFTWAREGLU C:119 , ASP C:180 , GLU C:182 , ASP C:216BINDING SITE FOR RESIDUE CA C 909
090JC9SOFTWAREASN C:215 , ASN C:217 , ASP C:246 , ASP C:248 , ALA C:254 , ASN C:304BINDING SITE FOR RESIDUE CA C 910
091KC1SOFTWAREGLU C:232 , ASP C:289 , GLU C:291 , GLU C:328 , CA C:915BINDING SITE FOR RESIDUE CA C 911
092KC2SOFTWAREASN C:327 , GLU C:328 , ASP C:358 , ASP C:360 , GLN C:365 , ASP C:414BINDING SITE FOR RESIDUE CA C 912
093KC3SOFTWAREGLU C:343 , ASP C:395 , GLU C:397 , ASP C:435 , CA C:916BINDING SITE FOR RESIDUE CA C 913
094KC4SOFTWAREASN C:434 , ASN C:436 , ASP C:461 , ASP C:463 , ASN C:467 , ASP C:515BINDING SITE FOR RESIDUE CA C 914
095KC5SOFTWAREGLU C:232 , GLU C:291 , ASP C:325 , VAL C:326 , GLU C:328 , ASP C:360 , CA C:911BINDING SITE FOR RESIDUE CA C 915
096KC6SOFTWAREGLU C:343 , GLU C:397 , ASP C:432 , VAL C:433 , ASP C:435 , ASP C:463 , CA C:913BINDING SITE FOR RESIDUE CA C 916
097KC7SOFTWAREASN D:102 , ASN D:104 , ASP D:134 , ASP D:136 , ASN D:143 , ASP D:195BINDING SITE FOR RESIDUE CA D 905
098KC8SOFTWAREGLU D:11 , GLU D:69 , ASP D:100 , GLN D:101 , ASP D:103 , ASP D:136BINDING SITE FOR RESIDUE CA D 906
099KC9SOFTWAREGLU D:11 , ASN D:12 , ASP D:67 , GLU D:69 , ASP D:103BINDING SITE FOR RESIDUE CA D 907
100LC1SOFTWAREGLU D:119 , GLU D:182 , ASP D:213 , ALA D:214 , ASP D:216 , ASP D:248BINDING SITE FOR RESIDUE CA D 908
101LC2SOFTWAREGLU D:119 , ASP D:180 , GLU D:182 , ASP D:216BINDING SITE FOR RESIDUE CA D 909
102LC3SOFTWAREASN D:215 , ASN D:217 , ASP D:246 , ASP D:248 , ALA D:254 , ASN D:304BINDING SITE FOR RESIDUE CA D 910
103LC4SOFTWAREGLU D:232 , ASP D:289 , GLU D:291 , GLU D:328 , CA D:915BINDING SITE FOR RESIDUE CA D 911
104LC5SOFTWAREASN D:327 , GLU D:328 , ASP D:358 , ASP D:360 , GLN D:365 , ASP D:414BINDING SITE FOR RESIDUE CA D 912
105LC6SOFTWAREGLU D:343 , ASP D:395 , GLU D:397 , ASP D:435 , CA D:916BINDING SITE FOR RESIDUE CA D 913
106LC7SOFTWAREASN D:434 , ASN D:436 , ASP D:461 , ASP D:463 , ASN D:467 , ASP D:515BINDING SITE FOR RESIDUE CA D 914
107LC8SOFTWAREGLU D:232 , GLU D:291 , ASP D:325 , VAL D:326 , GLU D:328 , ASP D:360 , CA D:911BINDING SITE FOR RESIDUE CA D 915
108LC9SOFTWAREGLU D:343 , GLU D:397 , ASP D:432 , VAL D:433 , ASP D:435 , ASP D:463 , CA D:913BINDING SITE FOR RESIDUE CA D 916

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:448 -A:532
2A:530 -A:539
3B:448 -B:532
4B:530 -B:539
5C:448 -C:532
6C:530 -C:539
7D:448 -D:532
8D:530 -D:539

(-) Cis Peptide Bonds  (16, 16)

Asymmetric/Biological Unit
No.Residues
1Phe A:17 -Pro A:18
2Pro A:46 -Pro A:47
3Glu A:157 -Pro A:158
4Pro A:465 -Pro A:466
5Phe B:17 -Pro B:18
6Pro B:46 -Pro B:47
7Glu B:157 -Pro B:158
8Pro B:465 -Pro B:466
9Phe C:17 -Pro C:18
10Pro C:46 -Pro C:47
11Glu C:157 -Pro C:158
12Pro C:465 -Pro C:466
13Phe D:17 -Pro D:18
14Pro D:46 -Pro D:47
15Glu D:157 -Pro D:158
16Pro D:465 -Pro D:466

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Q5C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Q5C)

(-) Exons   (0, 0)

(no "Exon" information available for 1Q5C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:540
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d1q5ca_ A: Ep-cadherin                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee........eeeee...hhhhh..eeeeeee..........eee.....eeee..........eeeeeeeeee.........eeeeeeee.......ee....eeeeee......eeeee..ee...............eeeee.........eee.....eeee...........eeeeeeeeehhhhh..eee..eeeeee............eeeeeee......eeeee..............ee..........eeeee......eeeee...........eeeee..ee............eeeeeeee......ee...ee...........eeeee..ee.........eeeee........eee....eeee................eeeeeeee.........eeee.................eee.......eeee..................................eeee.............eee........eeee..eee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1q5c A   1 DWVIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIKCQ 540
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540


Chain B from PDB  Type:PROTEIN  Length:540
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d1q5cb_ B: Ep-cadherin                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee........eeeee...hhhhh..eeeeeee..........eee.....eeee..........eeeeeeeeee.........eeeeeeee.......ee....eeeeee......eeeee..ee...............eeeee.........eee.....eeee...........eeeeeeeeehhhhh..eee..eeeeee............eeeeeee......eeeee..............ee..........eeeee......eeeee...........eeeee..ee............eeeeeeee......ee...ee...........eeeee..ee.........eeeee........eee....eeee................eeeeeeee.........eeee.................eee.......eeee..................................eeee.............eee........eeee..eee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1q5c B   1 DWVIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIKCQ 540
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540


Chain C from PDB  Type:PROTEIN  Length:540
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d1q5cc_ C: Ep-cadherin                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee........eeeee...hhhhh..eeeeeee..........eee.....eeee..........eeeeeeeeee.........eeeeeeee.......ee....eeeeee......eeeee..ee...............eeeee.........eee.....eeee...........eeeeeeeeehhhhh..eee..eeeeee............eeeeeee......eeeee..............ee..........eeeee......eeeee...........eeeee..ee............eeeeeeee......ee...ee...........eeeee..ee.........eeeee........eee....eeee................eeeeeeee.........eeee...........ee....eee.......eeeeee................................eeee.............eee........eeee..eee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1q5c C   1 DWVIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIKCQ 540
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540


Chain D from PDB  Type:PROTEIN  Length:540
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d1q5cd_ D: Ep-cadherin                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee........eeeee...hhhhh..eeeeeee..........eee.....eeee..........eeeeeeeeee.........eeeeeeee.......ee....eeeeee......eeeee..ee...............eeeee.........eee.....eeee...........eeeeeeeeehhhhh..eee..eeeeee............eeeeeee......eeeee..............ee..........eeeee......eeeee...........eeeee..ee............eeeeeeee......ee...ee...........eeeee..ee.........eeeee........eee....eeee................eeeeeeee.........eeee.................eee.......eeee..................................eeee.............eee........eeee..eee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1q5c D   1 DWVIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIKCQ 540
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Low resolution protein structures (283)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1Q5C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1Q5C)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1Q5C)

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 Related Entries

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(-) Related Entries Specified in the PDB File

1l3w C-CADHERIN ECTODOMAIN
1q55
1q5a
1q5b RELATED ID: EMD-1052 RELATED DB: EMDB