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(-) Description

Title :  STRUCTURE OF PHOSPHORYLATED PHENYLALANINE HYDROXYLASE
 
Authors :  B. Kobe, I. G. Jennings, C. M. House, B. J. Michell, R. G. Cotton, B. E. Kemp
Date :  11 Nov 98  (Deposition) - 30 Apr 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Phenylalanine Hydroxylase, Aromatic Amino Acid Hydroxylase, Phosphorylation, Intrasteric Regulation, Allosteric Regulation, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. Kobe, I. G. Jennings, C. M. House, B. J. Michell, K. E. Goodwill, B. D. Santarsiero, R. C. Stevens, R. G. Cotton, B. E. Kemp
Structural Basis Of Autoregulation Of Phenylalanine Hydroxylase.
Nat. Struct. Biol. V. 6 442 1999
PubMed-ID: 10331871  |  Reference-DOI: 10.1038/8247
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (PHENYLALANINE HYDROXYLASE)
    Cellular LocationCYTOPLASM
    ChainsA
    EC Number1.14.16.1
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Cell LineSF9
    Expression System CommonFALL ARMYWORM
    Expression System Taxid7108
    Expression System VectorBACULOVIRUS
    FragmentPHEOH-24 (RESIDUES 1-429)
    Organism CommonNORWAY RAT
    Organism ScientificRATTUS NORVEGICUS
    Organism Taxid10116
    SynonymPHENYLALANINE 4-MONOOXYGENASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1FE1Ligand/IonFE (III) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:285 , HIS A:290 , GLU A:330 , HOH A:533BINDING SITE FOR RESIDUE FE A 501
2FEAUTHORHIS A:285 , HIS A:290 , GLU A:330IRON BINDING SITE

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PHZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1PHZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1PHZ)

(-) PROSITE Motifs  (3, 3)

Asymmetric Unit (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ACTPS51671 ACT domain profile.PH4H_RAT36-114  1A:36-114
2BH4_AAA_HYDROXYL_2PS51410 Biopterin-dependent aromatic amino acid hydroxylase family profile.PH4H_RAT106-452  1A:106-427
3BH4_AAA_HYDROXYL_1PS00367 Biopterin-dependent aromatic amino acid hydroxylases signature.PH4H_RAT281-292  1A:281-292
Biological Unit 1 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ACTPS51671 ACT domain profile.PH4H_RAT36-114  2A:36-114
2BH4_AAA_HYDROXYL_2PS51410 Biopterin-dependent aromatic amino acid hydroxylase family profile.PH4H_RAT106-452  2A:106-427
3BH4_AAA_HYDROXYL_1PS00367 Biopterin-dependent aromatic amino acid hydroxylases signature.PH4H_RAT281-292  2A:281-292

(-) Exons   (0, 0)

(no "Exon" information available for 1PHZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:403
 aligned with PH4H_RAT | P04176 from UniProtKB/Swiss-Prot  Length:453

    Alignment length:409
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418         
             PH4H_RAT    19 GQETSYIEDNSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHELSRDKEKNTVPWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPRVEYTEEEKQTWGTVFRTLKALYKTHACYEHNHIFPLLEKYCGFREDNIPQLEDVSQFLQTCTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKEGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTACQEYSVTEFQPLYYVAESFSDAKEKVRTFAATIPRPFSVRYDPYTQRVEVLDNT 427
               SCOP domains d1phza1 A:19-115 Phenylalanine hydroxylase N-terminal domain                                     d1phza2 A:116-427 Phe      nylalanine hydroxylase, PAH                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1phzA00 A:19-427 Phenylalanine Hydroxylase                                                                                                                                                                                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------ACT-1phzA01 A:35-102                                                ----------------Biopterin_H-1phzA0      2 A:119-427                                                                                                                                                                                                                                                                                   Pfam domains
         Sec.struct. author ................eeeeeeee....hhhhhhhhhhhh......eeeee......eeeeee...hhhhhhhhhhhhhhhh.....eeeee..............hhhhh.......------.........hhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..........hhhhhhhhhhhh..eeee......hhhhhhhhhh.eeee.................hhhhhhh.hhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhh......eeee..eeee..hhhh..hhhhhhh.....eeee..hhhhhh..........eeee...hhhhhhhhhhhhhh.....eeeee....eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------ACT  PDB: A:36-114 UniProt: 36-114                                             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------BH4_AAA_HYDR--------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------BH4_AAA_HYDROXYL_2  PDB: A:106-427 UniProt: 106-452                                                                                                                                                                                                                                                                                PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1phz A  19 GQETSYIEDNSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHELSRDKEKNTVPWFPRTIQELDRFANQIL------DADHPGFKDPVYRARRKQFADIAYNYRHGQPIPRVEYTEEEKQTWGTVFRTLKALYKTHACYEHNHIFPLLEKYCGFREDNIPQLEDVSQFLQTCTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKEGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTACQEYSVTEFQPLYYVAESFSDAKEKVRTFAATIPRPFSVRYDPYTQRVEVLDNT 427
                                    28        38        48        58        68        78        88        98       108       118       128       | -    |  148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418         
                                                                                                                                               136    143                                                                                                                                                                                                                                                                                            

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit

(-) CATH Domains  (1, 1)

Asymmetric Unit

(-) Pfam Domains  (2, 2)

Asymmetric Unit
(-)
Clan: ACT (34)

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)
Chain A   (PH4H_RAT | P04176)
molecular function
    GO:0016597    amino acid binding    Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0048037    cofactor binding    Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016714    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced pteridine and one other donor, and one atom of oxygen is incorporated into one donor.
    GO:0004505    phenylalanine 4-monooxygenase activity    Catalysis of the reaction: L-phenylalanine + tetrahydrobiopterin + O2 = L-tyrosine + 4-alpha-hydroxytetrahydrobiopterin.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
    GO:0006559    L-phenylalanine catabolic process    The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid.
    GO:0006558    L-phenylalanine metabolic process    The chemical reactions and pathways involving L-phenylalanine, the L-enantiomer of 2-amino-3-phenylpropanoic acid, i.e. (2S)-2-amino-3-phenylpropanoic acid.
    GO:0009072    aromatic amino acid family metabolic process    The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0018126    protein hydroxylation    The addition of a hydroxy group to a protein amino acid.
    GO:0042558    pteridine-containing compound metabolic process    The chemical reactions and pathways involving any compound containing pteridine (pyrazino(2,3-dipyrimidine)), e.g. pteroic acid, xanthopterin and folic acid.
    GO:0046146    tetrahydrobiopterin metabolic process    The chemical reactions and pathways involving tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine.
    GO:0006571    tyrosine biosynthetic process    The chemical reactions and pathways resulting in the formation of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid.

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 Related Entries

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        PH4H_RAT | P041762phm 5den 5egq 5fgj

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