Chain A from PDB Type:PROTEIN Length:183
aligned with TBP_PYRWO | P62001 from UniProtKB/Swiss-Prot Length:191
Alignment length:183
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181
TBP_PYRWO 2 VDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKYGLL 184
SCOP domains d1pcza1 A:2-92 TATA-box binding protein (TBP), C-terminal domain d1pcza2 A:93-184 TATA-box binding protein (TBP), C-terminal domain SCOP domains
CATH domains ---1pczA01 1pczA02 A:16-102 TATA-Binding Protein 1pczA01 A:5-15,A:103-184 TATA-Binding Protein CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhh.eeeeeeeeeeee......hhhhhhh.............eeeee....eeeee....eeeee....hhhhhhhhhhhhhhhhhh........eeee.eeeeeee......hhhhhhh...eeee...eeeeeeee....eeeee....eeeee....hhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------TFIID PDB: A:38-87 UniProt: 38-87 -----------------------------------------TFIID PDB: A:129-178 UniProt: 129-178 ------ PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1pcz A 2 VDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKYGLL 184
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181
Chain B from PDB Type:PROTEIN Length:183
aligned with TBP_PYRWO | P62001 from UniProtKB/Swiss-Prot Length:191
Alignment length:183
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181
TBP_PYRWO 2 VDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKYGLL 184
SCOP domains d1pczb1 B:2-92 TATA-box binding protein (TBP), C-terminal domain d1pczb2 B:93-184 TATA-box binding protein (TBP), C-terminal domain SCOP domains
CATH domains ---1pczB01 1pczB02 B:16-102 TATA-Binding Protein 1pczB01 B:5-15,B:103-184 TATA-Binding Protein CATH domains
Pfam domains (1) -----------------------------------------------------------------------------------------------TBP-1pczB01 B:97-182 -- Pfam domains (1)
Pfam domains (2) -----------------------------------------------------------------------------------------------TBP-1pczB02 B:97-182 -- Pfam domains (2)
Pfam domains (3) -----------------------------------------------------------------------------------------------TBP-1pczB03 B:97-182 -- Pfam domains (3)
Pfam domains (4) -----------------------------------------------------------------------------------------------TBP-1pczB04 B:97-182 -- Pfam domains (4)
Sec.struct. author ..hhh.eeeeeeeeeeee......hhhhhhh..eee........eeeee....eeeee....eeeee....hhhhhhhhhhhhhhhhhh........eeee.eeeeeee......hhhhhhh.............eeeee....eeeee....eeeee....hhhhhhhhhhhhhhhhh.... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------TFIID PDB: B:38-87 UniProt: 38-87 -----------------------------------------TFIID PDB: B:129-178 UniProt: 129-178 ------ PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1pcz B 2 VDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKYGLL 184
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181
Legend: |
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→ Mismatch |
(orange background) |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |