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(-) Description

Title :  COMPLEX BETWEEN YPD1 AND SLN1 RESPONSE REGULATOR DOMAIN IN SPACE GROUP P3(2)
 
Authors :  Q. Xu, S. W. Porter, A. H. West
Date :  02 Apr 03  (Deposition) - 16 Dec 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  K,L  (1x)
Biol. Unit 7:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),I (1x),J (1x)
Keywords :  Phosphorelay Protein, Two-Component Signaling Protein, Response Regulator, Hpt Domain, Histidine-Containing Phosphotransfer Protein, Ypd1P, Sln1P, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Q. Xu, S. W. Porter, A. H. West
The Yeast Ypd1/Sln1 Complex. Insights Into Molecular Recognition In Two-Component Signaling Systems.
Structure V. 11 1569 2003
PubMed-ID: 14656441  |  Reference-DOI: 10.1016/J.STR.2003.10.016
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - YPD1P
    ChainsA, C, E, G, I, K
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPUC DERIVATIVE
    Expression System StrainDH5ALPHA
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentYPD1
    GeneYPD1
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
 
Molecule 2 - SLN1
    ChainsB, D, F, H, J, L
    EC Number2.7.3.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPCYB2
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentC-TERMINAL RESIDUES 1087-1220
    GeneSLN1 OR YPD2 OR YIL147C
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    SynonymOSMOLARITY TWO-COMPONENT SYSTEM PROTEIN

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit ABCDEFGHIJKL
Biological Unit 1 (1x)AB          
Biological Unit 2 (1x)  CD        
Biological Unit 3 (1x)    EF      
Biological Unit 4 (1x)      GH    
Biological Unit 5 (1x)        IJ  
Biological Unit 6 (1x)          KL
Biological Unit 7 (1x)A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)  I (1x)J (1x)  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric Unit (1, 18)
No.NameCountTypeFull Name
1SO418Ligand/IonSULFATE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 5 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 6 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 7 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:64 , LYS A:67 , GLN A:86 , ARG A:90BINDING SITE FOR RESIDUE SO4 A 5001
02AC2SOFTWAREPRO A:5 , SER A:6 , LYS D:1157 , ARG D:1161BINDING SITE FOR RESIDUE SO4 A 5002
03AC3SOFTWAREGLN A:34 , GLN A:38 , HIS B:1097 , HOH B:5034 , HOH B:5175 , ARG G:48BINDING SITE FOR RESIDUE SO4 B 5003
04AC4SOFTWAREHIS C:64 , LYS C:67 , GLN C:86 , ARG C:90BINDING SITE FOR RESIDUE SO4 C 5004
05AC5SOFTWAREPRO C:5 , SER C:6 , LYS F:1157 , ARG F:1161BINDING SITE FOR RESIDUE SO4 C 5005
06AC6SOFTWAREGLN C:34 , GLN C:38 , HOH C:5025 , HIS D:1097 , ARG K:48BINDING SITE FOR RESIDUE SO4 C 5006
07AC7SOFTWAREHIS E:64 , LYS E:67 , GLN E:86 , ARG E:90BINDING SITE FOR RESIDUE SO4 E 5007
08AC8SOFTWARELYS B:1157 , ARG B:1161 , PRO E:5 , SER E:6 , GLU E:7 , THR J:1204BINDING SITE FOR RESIDUE SO4 E 5008
09AC9SOFTWAREGLN E:34 , GLN E:38 , HIS F:1097 , HOH F:5022 , HOH F:5062 , ARG I:48BINDING SITE FOR RESIDUE SO4 F 5009
10BC1SOFTWAREHIS G:64 , LYS G:67 , GLN G:86 , ARG G:90 , HOH G:5156BINDING SITE FOR RESIDUE SO4 G 5010
11BC2SOFTWAREPRO G:5 , SER G:6 , LYS J:1157 , ARG J:1161BINDING SITE FOR RESIDUE SO4 G 5011
12BC3SOFTWAREARG A:48 , GLN G:34 , GLN G:38 , HIS H:1097 , HOH H:5056BINDING SITE FOR RESIDUE SO4 H 5012
13BC4SOFTWAREHIS I:64 , LYS I:67 , GLN I:86 , ARG I:90BINDING SITE FOR RESIDUE SO4 I 5013
14BC5SOFTWARETHR F:1204 , PRO I:5 , SER I:6 , LYS L:1157 , ARG L:1161BINDING SITE FOR RESIDUE SO4 I 5014
15BC6SOFTWAREARG E:48 , GLN I:34 , GLN I:38 , HIS J:1097 , HOH J:5027BINDING SITE FOR RESIDUE SO4 J 5015
16BC7SOFTWAREHIS K:64 , LYS K:67 , GLN K:86 , ARG K:90BINDING SITE FOR RESIDUE SO4 K 5016
17BC8SOFTWARETHR D:1204 , LYS H:1157 , ARG H:1161 , PRO K:5 , SER K:6BINDING SITE FOR RESIDUE SO4 K 5017
18BC9SOFTWAREARG C:48 , GLN K:34 , GLN K:38 , HIS L:1097 , HOH L:5100BINDING SITE FOR RESIDUE SO4 L 5018

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OXK)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Ile A:124 -Lys A:125
2Lys B:1195 -Pro B:1196
3Lys D:1195 -Pro D:1196
4Ile E:124 -Lys E:125
5Lys F:1195 -Pro F:1196
6Lys H:1195 -Pro H:1196
7Lys J:1195 -Pro J:1196
8Lys L:1195 -Pro L:1196

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OXK)

(-) PROSITE Motifs  (2, 12)

Asymmetric Unit (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HPTPS50894 Histidine-containing phosphotransfer (HPt) domain profile.YPD1_YEAST24-129
 
 
 
 
 
  6A:26-125
C:26-125
E:26-125
G:26-125
I:26-125
K:26-125
2RESPONSE_REGULATORYPS50110 Response regulatory domain profile.SLN1_YEAST1089-1210
 
 
 
 
 
  6B:1089-1210
D:1089-1210
F:1089-1210
H:1089-1210
J:1089-1210
L:1089-1210
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HPTPS50894 Histidine-containing phosphotransfer (HPt) domain profile.YPD1_YEAST24-129
 
 
 
 
 
  1A:26-125
-
-
-
-
-
2RESPONSE_REGULATORYPS50110 Response regulatory domain profile.SLN1_YEAST1089-1210
 
 
 
 
 
  1B:1089-1210
-
-
-
-
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HPTPS50894 Histidine-containing phosphotransfer (HPt) domain profile.YPD1_YEAST24-129
 
 
 
 
 
  1-
C:26-125
-
-
-
-
2RESPONSE_REGULATORYPS50110 Response regulatory domain profile.SLN1_YEAST1089-1210
 
 
 
 
 
  1-
D:1089-1210
-
-
-
-
Biological Unit 3 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HPTPS50894 Histidine-containing phosphotransfer (HPt) domain profile.YPD1_YEAST24-129
 
 
 
 
 
  1-
-
E:26-125
-
-
-
2RESPONSE_REGULATORYPS50110 Response regulatory domain profile.SLN1_YEAST1089-1210
 
 
 
 
 
  1-
-
F:1089-1210
-
-
-
Biological Unit 4 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HPTPS50894 Histidine-containing phosphotransfer (HPt) domain profile.YPD1_YEAST24-129
 
 
 
 
 
  1-
-
-
G:26-125
-
-
2RESPONSE_REGULATORYPS50110 Response regulatory domain profile.SLN1_YEAST1089-1210
 
 
 
 
 
  1-
-
-
H:1089-1210
-
-
Biological Unit 5 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HPTPS50894 Histidine-containing phosphotransfer (HPt) domain profile.YPD1_YEAST24-129
 
 
 
 
 
  1-
-
-
-
I:26-125
-
2RESPONSE_REGULATORYPS50110 Response regulatory domain profile.SLN1_YEAST1089-1210
 
 
 
 
 
  1-
-
-
-
J:1089-1210
-
Biological Unit 6 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HPTPS50894 Histidine-containing phosphotransfer (HPt) domain profile.YPD1_YEAST24-129
 
 
 
 
 
  1-
-
-
-
-
K:26-125
2RESPONSE_REGULATORYPS50110 Response regulatory domain profile.SLN1_YEAST1089-1210
 
 
 
 
 
  1-
-
-
-
-
L:1089-1210
Biological Unit 7 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HPTPS50894 Histidine-containing phosphotransfer (HPt) domain profile.YPD1_YEAST24-129
 
 
 
 
 
  4A:26-125
C:26-125
E:26-125
-
I:26-125
-
2RESPONSE_REGULATORYPS50110 Response regulatory domain profile.SLN1_YEAST1089-1210
 
 
 
 
 
  4B:1089-1210
D:1089-1210
F:1089-1210
-
J:1089-1210
-

(-) Exons   (2, 12)

Asymmetric Unit (2, 12)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YDL235C1YDL235C.1IV:33918-33415504YPD1_YEAST1-1671676A:2-167 (gaps)
C:2-167 (gaps)
E:2-167 (gaps)
G:2-167 (gaps)
I:2-167 (gaps)
K:2-167 (gaps)
166
166
166
166
166
166

2.1YIL147C1YIL147C.1IX:73453-697913663SLN1_YEAST1-122012206B:1087-1214
D:1087-1214
F:1087-1214
H:1087-1214
J:1087-1214
L:1087-1214
128
128
128
128
128
128

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:156
 aligned with YPD1_YEAST | Q07688 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:166
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
          YPD1_YEAST      2 STIPSEIINWTILNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYNTNL  167
               SCOP domains d1oxka_ A: Phosphore    lay protein ypd1                                                                                                                               SCOP domains
               CATH domains 1oxkA00 A:2-167  [co    de=1.20.120.160, no name defined]                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..----hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.......hhhhhhh...hhhhhh............------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------HPT  PDB: A:26-125 UniProt: 24-129                                                                        -------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: A:2-167 (gaps) UniProt: 1-167 [INCOMPLETE]                                                                                                              Transcript 1
                1oxk A    2 STIPSEIINWTILNEIISMD----DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIK------DENSIYLILIAKALNQSRLEFKLARIELSKYYNTNL  167
                                    11        21    |   31        41        51        61        71        81        91       101       111       121   |     -|      141       151       161      
                                              21   26                                                                                                125    132                                   

Chain B from PDB  Type:PROTEIN  Length:128
 aligned with SLN1_YEAST | P39928 from UniProtKB/Swiss-Prot  Length:1220

    Alignment length:128
                                  1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206        
          SLN1_YEAST   1087 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAYQ 1214
               SCOP domains d1oxkb_ B: Response regulator Sin1                                                                                               SCOP domains
               CATH domains 1oxkB00 B:1087-1214  [code=3.40.50.2300, no name defined]                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhh.....eeeee......hhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --RESPONSE_REGULATORY  PDB: B:1089-1210 UniProt: 1089-1210                                                                  ---- PROSITE
               Transcript 2 Exon 2.1  PDB: B:1087-1214 UniProt: 1-1220 [INCOMPLETE]                                                                          Transcript 2
                1oxk B 1087 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAYQ 1214
                                  1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206        

Chain C from PDB  Type:PROTEIN  Length:156
 aligned with YPD1_YEAST | Q07688 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:166
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
          YPD1_YEAST      2 STIPSEIINWTILNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYNTNL  167
               SCOP domains d1oxkc_ C: Phosphore    lay protein ypd1                                                                                                                               SCOP domains
               CATH domains 1oxkC00 C:2-167  [co    de=1.20.120.160, no name defined]                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..----hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.......hhhhhhh...hhhhhh............------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------HPT  PDB: C:26-125 UniProt: 24-129                                                                        -------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: C:2-167 (gaps) UniProt: 1-167 [INCOMPLETE]                                                                                                              Transcript 1
                1oxk C    2 STIPSEIINWTILNEIISMD----DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIK------DENSIYLILIAKALNQSRLEFKLARIELSKYYNTNL  167
                                    11        21    |   31        41        51        61        71        81        91       101       111       121   |     -|      141       151       161      
                                              21   26                                                                                                125    132                                   

Chain D from PDB  Type:PROTEIN  Length:128
 aligned with SLN1_YEAST | P39928 from UniProtKB/Swiss-Prot  Length:1220

    Alignment length:128
                                  1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206        
          SLN1_YEAST   1087 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAYQ 1214
               SCOP domains d1oxkd_ D: Response regulator Sin1                                                                                               SCOP domains
               CATH domains 1oxkD00 D:1087-1214  [code=3.40.50.2300, no name defined]                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhh.....eeeee......hhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh...eeee...hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --RESPONSE_REGULATORY  PDB: D:1089-1210 UniProt: 1089-1210                                                                  ---- PROSITE
               Transcript 2 Exon 2.1  PDB: D:1087-1214 UniProt: 1-1220 [INCOMPLETE]                                                                          Transcript 2
                1oxk D 1087 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAYQ 1214
                                  1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206        

Chain E from PDB  Type:PROTEIN  Length:156
 aligned with YPD1_YEAST | Q07688 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:166
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
          YPD1_YEAST      2 STIPSEIINWTILNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYNTNL  167
               SCOP domains d1oxke_ E: Phosphore    lay protein ypd1                                                                                                                               SCOP domains
               CATH domains 1oxkE00 E:2-167  [co    de=1.20.120.160, no name defined]                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..----hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.......hhhhhhh...hhhhhh............------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------HPT  PDB: E:26-125 UniProt: 24-129                                                                        -------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: E:2-167 (gaps) UniProt: 1-167 [INCOMPLETE]                                                                                                              Transcript 1
                1oxk E    2 STIPSEIINWTILNEIISMD----DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIK------DENSIYLILIAKALNQSRLEFKLARIELSKYYNTNL  167
                                    11        21    |   31        41        51        61        71        81        91       101       111       121   |     -|      141       151       161      
                                              21   26                                                                                                125    132                                   

Chain F from PDB  Type:PROTEIN  Length:128
 aligned with SLN1_YEAST | P39928 from UniProtKB/Swiss-Prot  Length:1220

    Alignment length:128
                                  1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206        
          SLN1_YEAST   1087 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAYQ 1214
               SCOP domains d1oxkf_ F: Response regulator Sin1                                                                                               SCOP domains
               CATH domains 1oxkF00 F:1087-1214  [code=3.40.50.2300, no name defined]                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhh.....eeeee......hhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh...eeee...hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --RESPONSE_REGULATORY  PDB: F:1089-1210 UniProt: 1089-1210                                                                  ---- PROSITE
               Transcript 2 Exon 2.1  PDB: F:1087-1214 UniProt: 1-1220 [INCOMPLETE]                                                                          Transcript 2
                1oxk F 1087 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAYQ 1214
                                  1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206        

Chain G from PDB  Type:PROTEIN  Length:156
 aligned with YPD1_YEAST | Q07688 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:166
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
          YPD1_YEAST      2 STIPSEIINWTILNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYNTNL  167
               SCOP domains d1oxkg_ G: Phosphore    lay protein ypd1                                                                                                                               SCOP domains
               CATH domains 1oxkG00 G:2-167  [co    de=1.20.120.160, no name defined]                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..----hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.......hhhhhhh...hhhhhh............------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------HPT  PDB: G:26-125 UniProt: 24-129                                                                        -------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: G:2-167 (gaps) UniProt: 1-167 [INCOMPLETE]                                                                                                              Transcript 1
                1oxk G    2 STIPSEIINWTILNEIISMD----DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIK------DENSIYLILIAKALNQSRLEFKLARIELSKYYNTNL  167
                                    11        21    |   31        41        51        61        71        81        91       101       111       121   |     -|      141       151       161      
                                              21   26                                                                                                125    132                                   

Chain H from PDB  Type:PROTEIN  Length:128
 aligned with SLN1_YEAST | P39928 from UniProtKB/Swiss-Prot  Length:1220

    Alignment length:128
                                  1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206        
          SLN1_YEAST   1087 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAYQ 1214
               SCOP domains d1oxkh_ H: Response regulator Sin1                                                                                               SCOP domains
               CATH domains 1oxkH00 H:1087-1214  [code=3.40.50.2300, no name defined]                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhh.....eeeee......hhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh...eeee...hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --RESPONSE_REGULATORY  PDB: H:1089-1210 UniProt: 1089-1210                                                                  ---- PROSITE
               Transcript 2 Exon 2.1  PDB: H:1087-1214 UniProt: 1-1220 [INCOMPLETE]                                                                          Transcript 2
                1oxk H 1087 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAYQ 1214
                                  1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206        

Chain I from PDB  Type:PROTEIN  Length:156
 aligned with YPD1_YEAST | Q07688 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:166
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
          YPD1_YEAST      2 STIPSEIINWTILNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYNTNL  167
               SCOP domains d1oxki_ I: Phosphore    lay protein ypd1                                                                                                                               SCOP domains
               CATH domains 1oxkI00 I:2-167  [co    de=1.20.120.160, no name defined]                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..----hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.......hhhhhhh...hhhhhh............------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------HPT  PDB: I:26-125 UniProt: 24-129                                                                        -------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: I:2-167 (gaps) UniProt: 1-167 [INCOMPLETE]                                                                                                              Transcript 1
                1oxk I    2 STIPSEIINWTILNEIISMD----DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIK------DENSIYLILIAKALNQSRLEFKLARIELSKYYNTNL  167
                                    11        21    |   31        41        51        61        71        81        91       101       111       121   |     -|      141       151       161      
                                              21   26                                                                                                125    132                                   

Chain J from PDB  Type:PROTEIN  Length:128
 aligned with SLN1_YEAST | P39928 from UniProtKB/Swiss-Prot  Length:1220

    Alignment length:128
                                  1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206        
          SLN1_YEAST   1087 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAYQ 1214
               SCOP domains d1oxkj_ J: Response regulator Sin1                                                                                               SCOP domains
               CATH domains 1oxkJ00 J:1087-1214  [code=3.40.50.2300, no name defined]                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhh.....eeeee......hhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --RESPONSE_REGULATORY  PDB: J:1089-1210 UniProt: 1089-1210                                                                  ---- PROSITE
               Transcript 2 Exon 2.1  PDB: J:1087-1214 UniProt: 1-1220 [INCOMPLETE]                                                                          Transcript 2
                1oxk J 1087 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAYQ 1214
                                  1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206        

Chain K from PDB  Type:PROTEIN  Length:156
 aligned with YPD1_YEAST | Q07688 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:166
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
          YPD1_YEAST      2 STIPSEIINWTILNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYNTNL  167
               SCOP domains d1oxkk_ K: Phosphore    lay protein ypd1                                                                                                                               SCOP domains
               CATH domains 1oxkK00 K:2-167  [co    de=1.20.120.160, no name defined]                                                                                                              CATH domains
           Pfam domains (1) ----------------------------Hpt-1oxkK01 K:30-107                                                          ------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) ----------------------------Hpt-1oxkK02 K:30-107                                                          ------------------------------------------------------------ Pfam domains (2)
           Pfam domains (3) ----------------------------Hpt-1oxkK03 K:30-107                                                          ------------------------------------------------------------ Pfam domains (3)
           Pfam domains (4) ----------------------------Hpt-1oxkK04 K:30-107                                                          ------------------------------------------------------------ Pfam domains (4)
           Pfam domains (5) ----------------------------Hpt-1oxkK05 K:30-107                                                          ------------------------------------------------------------ Pfam domains (5)
           Pfam domains (6) ----------------------------Hpt-1oxkK06 K:30-107                                                          ------------------------------------------------------------ Pfam domains (6)
         Sec.struct. author ........hhhhhhhhhh..----hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.......hhhhhhh...hhhhhh............------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------HPT  PDB: K:26-125 UniProt: 24-129                                                                        -------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: K:2-167 (gaps) UniProt: 1-167 [INCOMPLETE]                                                                                                              Transcript 1
                1oxk K    2 STIPSEIINWTILNEIISMD----DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIK------DENSIYLILIAKALNQSRLEFKLARIELSKYYNTNL  167
                                    11        21    |   31        41        51        61        71        81        91       101       111       121   |     -|      141       151       161      
                                              21   26                                                                                                125    132                                   

Chain L from PDB  Type:PROTEIN  Length:128
 aligned with SLN1_YEAST | P39928 from UniProtKB/Swiss-Prot  Length:1220

    Alignment length:128
                                  1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206        
          SLN1_YEAST   1087 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAYQ 1214
               SCOP domains d1oxkl_ L: Response regulator Sin1                                                                                               SCOP domains
               CATH domains 1oxkL00 L:1087-1214  [code=3.40.50.2300, no name defined]                                                                        CATH domains
           Pfam domains (1) ---Response_reg-1oxkL01 L:1090-1207                                                                                      ------- Pfam domains (1)
           Pfam domains (2) ---Response_reg-1oxkL02 L:1090-1207                                                                                      ------- Pfam domains (2)
           Pfam domains (3) ---Response_reg-1oxkL03 L:1090-1207                                                                                      ------- Pfam domains (3)
           Pfam domains (4) ---Response_reg-1oxkL04 L:1090-1207                                                                                      ------- Pfam domains (4)
           Pfam domains (5) ---Response_reg-1oxkL05 L:1090-1207                                                                                      ------- Pfam domains (5)
           Pfam domains (6) ---Response_reg-1oxkL06 L:1090-1207                                                                                      ------- Pfam domains (6)
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhh.....eeeee......hhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh...eeee...hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --RESPONSE_REGULATORY  PDB: L:1089-1210 UniProt: 1089-1210                                                                  ---- PROSITE
               Transcript 2 Exon 2.1  PDB: L:1087-1214 UniProt: 1-1220 [INCOMPLETE]                                                                          Transcript 2
                1oxk L 1087 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAYQ 1214
                                  1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit

(-) CATH Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 12)

Asymmetric Unit
(-)
Clan: CheY (97)

(-) Gene Ontology  (29, 35)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G,I,K   (YPD1_YEAST | Q07688)
molecular function
    GO:0009927    histidine phosphotransfer kinase activity    Serves as a phospho-His intermediate enabling the transfer of phospho group between a hybrid kinase and a response regulator.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0043424    protein histidine kinase binding    Interacting selectively and non-covalently with protein histidine kinase.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0016772    transferase activity, transferring phosphorus-containing groups    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
biological process
    GO:0007234    osmosensory signaling via phosphorelay pathway    A series of molecular signals generated in response to osmotic change, as mediated through a phosphorelay system.
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B,D,F,H,J,L   (SLN1_YEAST | P39928)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0009927    histidine phosphotransfer kinase activity    Serves as a phospho-His intermediate enabling the transfer of phospho group between a hybrid kinase and a response regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005034    osmosensor activity    Sensing extracellular osmolarity to initiate a change in cell activity, and spanning the membrane of the cell.
    GO:0000156    phosphorelay response regulator activity    Responds to a phosphorelay sensor to initiate a change in cell state or activity. The activity of the response regulator is regulated by transfer of a phosphate from a histidine residue in the sensor, to an aspartate residue in the response regulator. Many but not all response regulators act as transcriptional regulators to elicit a response.
    GO:0000155    phosphorelay sensor kinase activity    Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004673    protein histidine kinase activity    Catalysis of the reaction: ATP + protein L-histidine = ADP + protein phospho-L-histidine.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016772    transferase activity, transferring phosphorus-containing groups    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
biological process
    GO:0006469    negative regulation of protein kinase activity    Any process that stops, prevents, or reduces the frequency, rate or extent of protein kinase activity.
    GO:0007234    osmosensory signaling via phosphorelay pathway    A series of molecular signals generated in response to osmotic change, as mediated through a phosphorelay system.
    GO:0018106    peptidyl-histidine phosphorylation    The phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine).
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0046777    protein autophosphorylation    The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation).
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0023014    signal transduction by protein phosphorylation    A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SLN1_YEAST | P399281oxb 2r25
        YPD1_YEAST | Q076881c02 1c03 1oxb 1qsp 2r25 5kbx

(-) Related Entries Specified in the PDB File

1oxb SAME COMPLEX IN SPACE GROUP P 2(1)2(1)2(1)
1qsp S. CEREVISIAE YPD1 STRUCTURE