1OUW - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF CALYSTEGIA SEPIUM AGGLUTININ

Authors :   Y. Bourne, V. Roig-Zamboni, A. Barre, W. J. Peumans, C. H. Astoul, E. J. M Damme, P. Rouge

Date :   25 Mar 03 (Deposition) - 11 Nov 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.37

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Beta-Prism Fold, Agglutinin, Lectin, Mannose-Binding, Jacalin- Related, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Bourne, V. Roig-Zamboni, A. Barre, W. J. Peumans, C. H. Astoul, E. J. M. Van Damme, P. Rouge
The Crystal Structure Of The Calystegia Sepium Agglutinin Reveals A Novel Quaternary Arrangement Of Lectin Subunits With A Beta-Prism Fold
J. Biol. Chem. V. 279 527 2004
PubMed-ID: 14561768 | Reference-DOI: 10.1074/JBC.M308218200

Molecule 1 - LECTIN
	Chains	:	A, B, C, D
	Organism Common	:	HEDGE BINDWEED
	Organism Scientific	:	CALYSTEGIA SEPIUM
	Organism Taxid	:	47519
	Synonym	:	AGGLUTININ

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 19)

No.	Name	Count	Type	Full Name
1	AYA	4	Mod. Amino Acid	N-ACETYLALANINE
2	EDO	9	Ligand/Ion	1,2-ETHANEDIOL
3	IMD	4	Ligand/Ion	IMIDAZOLE
4	MLT	2	Ligand/Ion	MALATE ION

Biological Unit 1 (3, 11)

No.	Name	Count	Type	Full Name
1	AYA	2	Mod. Amino Acid	N-ACETYLALANINE
2	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
3	IMD	4	Ligand/Ion	IMIDAZOLE
4	MLT	-1	Ligand/Ion	MALATE ION

Biological Unit 2 (3, 8)

No.	Name	Count	Type	Full Name
1	AYA	2	Mod. Amino Acid	N-ACETYLALANINE
2	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
3	IMD	-1	Ligand/Ion	IMIDAZOLE
4	MLT	2	Ligand/Ion	MALATE ION

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:109 , GLY D:91 , ILE D:92 , ARG D:100 , VAL D:118 , GLY D:119 , HOH D:653 , HOH D:846 , HOH D:847 , HOH D:885 , HOH D:1121 , HOH D:1166	BINDING SITE FOR RESIDUE MLT D 501
02	AC2	SOFTWARE	LYS B:109 , GLY C:91 , ILE C:92 , ARG C:100 , VAL C:118 , GLY C:119 , HOH C:683 , HOH C:830 , HOH C:942 , HOH C:1062 , HOH C:1122 , HOH C:1138	BINDING SITE FOR RESIDUE MLT C 502
03	AC3	SOFTWARE	GLY A:140 , TYR A:141 , TYR A:142 , ASP A:144 , IMD A:523	BINDING SITE FOR RESIDUE EDO A 510
04	AC4	SOFTWARE	PRO B:66 , TYR B:141 , HOH B:739 , ASN C:96 , GLY C:140 , TYR C:141 , TYR C:142 , ASP C:144	BINDING SITE FOR RESIDUE EDO C 511
05	AC5	SOFTWARE	PRO A:66 , TYR A:141 , EDO A:515 , ASN D:96 , GLY D:140 , TYR D:141 , TYR D:142 , ASP D:144	BINDING SITE FOR RESIDUE EDO D 512
06	AC6	SOFTWARE	GLY B:140 , TYR B:141 , TYR B:142 , ASP B:144 , IMD B:520	BINDING SITE FOR RESIDUE EDO B 513
07	AC7	SOFTWARE	GLY A:54 , SER A:55 , LYS A:56 , HOH A:908 , MET B:5 , HOH B:931 , HOH B:1191	BINDING SITE FOR RESIDUE EDO B 514
08	AC8	SOFTWARE	GLY A:64 , GLY A:65 , PRO A:66 , ASN D:96 , TYR D:141 , EDO D:512	BINDING SITE FOR RESIDUE EDO A 515
09	AC9	SOFTWARE	ARG A:138 , MET B:5 , ASP B:6 , HOH B:626 , HOH B:951	BINDING SITE FOR RESIDUE EDO B 516
10	BC1	SOFTWARE	ILE C:8 , SER C:55 , LYS C:56 , MET D:5 , HOH D:1036 , HOH D:1085	BINDING SITE FOR RESIDUE EDO D 517
11	BC2	SOFTWARE	TRP C:12 , GLY C:13 , THR C:72 , MET C:74 , HOH C:832 , HOH C:1176 , AYA D:2	BINDING SITE FOR RESIDUE EDO C 518
12	BC3	SOFTWARE	TYR B:141 , TYR B:142 , EDO B:513 , ASN C:15 , GLY C:17 , HOH C:1098	BINDING SITE FOR RESIDUE IMD B 520
13	BC4	SOFTWARE	VAL A:25 , ASN A:26 , LYS A:27 , GLU A:131	BINDING SITE FOR RESIDUE IMD A 521
14	BC5	SOFTWARE	VAL B:25 , ASN B:26 , LYS B:27 , GLU B:131	BINDING SITE FOR RESIDUE IMD B 522
15	BC6	SOFTWARE	ASN A:96 , TYR A:141 , EDO A:510 , ASN D:15 , GLY D:17	BINDING SITE FOR RESIDUE IMD A 523

(no "SS Bond" information available for 1OUW)

Asymmetric Unit

No.	Residues
1	Gly A:10	-	Pro A:11
2	Gly A:112	-	Pro A:113
3	Gly B:10	-	Pro B:11
4	Gly B:112	-	Pro B:113
5	Gly C:10	-	Pro C:11
6	Gly C:112	-	Pro C:113
7	Gly D:10	-	Pro D:11
8	Gly D:112	-	Pro D:113

(no "SAP(SNP)/Variant" information available for 1OUW)

(no "PROSITE Motif" information available for 1OUW)

(no "Exon" information available for 1OUW)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:149
 aligned with P93114_CALSE | P93114 from UniProtKB/TrEMBL  Length:153

    Alignment length:151
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151 
         P93114_CALSE     2 AVPMDTISGPWGNNGGNFWSFRPVNKINQIVISYGGGGNNPIALTFSSTKADGSKDTITVGGGGPDSITGTEMVNIGTDEYLTGISGTFGIYLDNNVLRSITFTTNLKAHGPYGQKVGTPFSSANVVGNEIVGFLGRSGYYVDAIGTYNRH 152
               SCOP domains d1ouwa_ A: Calystegia sepium agglutinin                                                                                                                 SCOP domains
               CATH domains -1ouwA00 A:3-152  [code=2.100.10.30, no name defined]                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee....eeeeee......eeeeeee....eeeeeeeeee.....eeeeeee........eeeeee......eeeeeeeeeee..eeeeeeeeeee...eeeeee....eeee....--.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ouw A   2 aVPMDTISGPWGNNGGNFWSFRPVNKINQIVISYGGGGNNPIALTFSSTKADGSKDTITVGGGGPDSITGTEMVNIGTDEYLTGISGTFGIYLDNNVLRSITFTTNLKAHGPYGQKVGTPFSSANV--NEIVGFLGRSGYYVDAIGTYNRH 152
                            |       11        21        31        41        51        61        71        81        91       101       111       121     | 131       141       151 
                            |                                                                                                                          127  |                      
                            2-AYA                                                                                                                         130

Chain B from PDB  Type:PROTEIN  Length:150
 aligned with P93114_CALSE | P93114 from UniProtKB/TrEMBL  Length:153

    Alignment length:152
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151  
         P93114_CALSE     2 AVPMDTISGPWGNNGGNFWSFRPVNKINQIVISYGGGGNNPIALTFSSTKADGSKDTITVGGGGPDSITGTEMVNIGTDEYLTGISGTFGIYLDNNVLRSITFTTNLKAHGPYGQKVGTPFSSANVVGNEIVGFLGRSGYYVDAIGTYNRHK 153
               SCOP domains d1ouwb_ B: Calystegia sepium agglutinin                                                                                                                  SCOP domains
               CATH domains -1ouwB00 B:3-153  [code=2.100.10.30, no name defin  ed]                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee....eeeeee......eeeeeee....eeeeeeeeee.--..eeeeeee......eeeeeeee......eeeeeeeeeee..eeeeeeeeeee...eeeee.....eeee......eeeeeeeeee...eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ouw B   2 aVPMDTISGPWGNNGGNFWSFRPVNKINQIVISYGGGGNNPIALTFSSTK--GSKDTITVGGGGPDSITGTEMVNIGTDEYLTGISGTFGIYLDNNVLRSITFTTNLKAHGPYGQKVGTPFSSANVVGNEIVGFLGRSGYYVDAIGTYNRHK 153
                            |       11        21        31        41        51  |     61        71        81        91       101       111       121       131       141       151  
                            2-AYA                                           51 54

Chain C from PDB  Type:PROTEIN  Length:152
 aligned with P93114_CALSE | P93114 from UniProtKB/TrEMBL  Length:153

    Alignment length:152
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151  
         P93114_CALSE     2 AVPMDTISGPWGNNGGNFWSFRPVNKINQIVISYGGGGNNPIALTFSSTKADGSKDTITVGGGGPDSITGTEMVNIGTDEYLTGISGTFGIYLDNNVLRSITFTTNLKAHGPYGQKVGTPFSSANVVGNEIVGFLGRSGYYVDAIGTYNRHK 153
               SCOP domains d1ouwc_ C: Calystegia sepium agglutinin                                                                                                                  SCOP domains
               CATH domains -1ouwC00 C:3-153  [code=2.100.10.30, no name defined]                                                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee....eeeeee......eeeeeee....eeeeeeeeee.....eeeeeee......eeeeeeee......eeeeeeeeeee..eeeeeeeeeee...eeeeee....eeee......eeeeeeeeee...eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ouw C   2 aVPMDTISGPWGNNGGNFWSFRPVNKINQIVISYGGGGNNPIALTFSSTKADGSKDTITVGGGGPDSITGTEMVNIGTDEYLTGISGTFGIYLDNNVLRSITFTTNLKAHGPYGQKVGTPFSSANVVGNEIVGFLGRSGYYVDAIGTYNRHK 153
                            |       11        21        31        41        51        61        71        81        91       101       111       121       131       141       151  
                            2-AYA

Chain D from PDB  Type:PROTEIN  Length:151
 aligned with P93114_CALSE | P93114 from UniProtKB/TrEMBL  Length:153

    Alignment length:152
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151  
         P93114_CALSE     2 AVPMDTISGPWGNNGGNFWSFRPVNKINQIVISYGGGGNNPIALTFSSTKADGSKDTITVGGGGPDSITGTEMVNIGTDEYLTGISGTFGIYLDNNVLRSITFTTNLKAHGPYGQKVGTPFSSANVVGNEIVGFLGRSGYYVDAIGTYNRHK 153
               SCOP domains d1ouwd_ D: Calystegia sepium agglutinin                                                                                                                  SCOP domains
               CATH domains -1ouwD00 D:3-153  [code=2.100.10.30, no name defined]                                                                                                    CATH domains
           Pfam domains (1) ---------------Jacalin-1ouwD01 D:17-152                                                                                                                - Pfam domains (1)
           Pfam domains (2) ---------------Jacalin-1ouwD02 D:17-152                                                                                                                - Pfam domains (2)
           Pfam domains (3) ---------------Jacalin-1ouwD03 D:17-152                                                                                                                - Pfam domains (3)
           Pfam domains (4) ---------------Jacalin-1ouwD04 D:17-152                                                                                                                - Pfam domains (4)
         Sec.struct. author .....eeeeeee....eeeeee......eeeeeee....eeeeeeeeee.....eeeeeee......eeeeeeee......eeeeeeeeeee..eeeeeeeeeee...eeeeee....eeee..-...eeeeeeeeee...eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ouw D   2 aVPMDTISGPWGNNGGNFWSFRPVNKINQIVISYGGGGNNPIALTFSSTKADGSKDTITVGGGGPDSITGTEMVNIGTDEYLTGISGTFGIYLDNNVLRSITFTTNLKAHGPYGQKVGTPFSSA-VVGNEIVGFLGRSGYYVDAIGTYNRHK 153
                            |       11        21        31        41        51        61        71        81        91       101       111       121   | | 131       141       151  
                            2-AYA                                                                                                                    125 |                          
                                                                                                                                                       127

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: beta-Prism I (50)

Superfamily: Mannose-binding lectins (42)

Family: Mannose-binding lectins (32)

Protein domain: Calystegia sepium agglutinin (1)

Hedge bindweed (Calystegia sepium) [TaxId: 47519] (1)

1a	d1ouwa_	A:
1b	d1ouwb_	B:
1c	d1ouwc_	C:
1d	d1ouwd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Aligned Prism (39)

Topology: Vitelline Membrane Outer Layer Protein I, subunit A (39)

Homologous Superfamily: [code=2.100.10.30, no name defined] (33)

Hedge bindweed (Calystegia sepium) (1)

1a	1ouwA00	A:3-152
1b	1ouwB00	B:3-153
1c	1ouwD00	D:3-153
1d	1ouwC00	C:3-153

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Jacalin] (35)

Family: Jacalin (35)

Calystegia sepium (Hedge bindweed) (Convolvulus sepium) (1)

1a	Jacalin-1ouwD01	D:17-152
1b	Jacalin-1ouwD02	D:17-152
1c	Jacalin-1ouwD03	D:17-152
1d	Jacalin-1ouwD04	D:17-152

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1OUW)

Asymmetric Unit
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	Cis Peptide Bonds
		Gly A:10 - Pro A:11	[ RasMol ]
		Gly A:112 - Pro A:113	[ RasMol ]
		Gly B:10 - Pro B:11	[ RasMol ]
		Gly B:112 - Pro B:113	[ RasMol ]
		Gly C:10 - Pro C:11	[ RasMol ]
		Gly C:112 - Pro C:113	[ RasMol ]
		Gly D:10 - Pro D:11	[ RasMol ]
		Gly D:112 - Pro D:113	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (4, 19)

Sites (15, 15)

SS Bonds (0, 0)

Cis Peptide Bonds (8, 8)

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